data_1OFR # _model_server_result.job_id cHuPixWvMO9AAsWw03meTQ _model_server_result.datetime_utc '2024-11-23 10:58:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ofr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"T","auth_seq_id":1002}' # _entry.id 1OFR # _exptl.entry_id 1OFR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 165.189 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description PHENYLALANINE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 65.14 _cell.angle_beta 85.68 _cell.angle_gamma 75.73 _cell.entry_id 1OFR _cell.length_a 82.287 _cell.length_b 94.034 _cell.length_c 105.121 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1OFR _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS dimeric 2 author_and_software_defined_assembly 1 PQS dimeric 2 author_and_software_defined_assembly 2 PQS dimeric 2 author_and_software_defined_assembly 3 PQS dimeric 2 author_and_software_defined_assembly 4 PISA tetrameric 4 software_defined_assembly 5 PISA tetrameric 4 software_defined_assembly 6 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,I,J,U,V 1 1 C,D,K,L,M,N,W,X 2 1 E,F,O,P,Y,Z 3 1 G,H,Q,R,S,T,AA,BA 4 1 E,F,G,H,O,P,Q,R,S,T,Y,Z,AA,BA 5 1 A,B,C,D,I,J,K,L,M,N,U,V,W,X 6 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 L N N ? 3 N N N ? 3 R N N ? 3 T N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 282 A HIS 282 1_555 I MN MN . A MN 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.628 ? metalc ? metalc2 A OE2 GLU 316 A GLU 316 1_555 I MN MN . A MN 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? metalc ? metalc3 A OD2 ASP 342 A ASP 342 1_555 I MN MN . A MN 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? metalc ? metalc4 B OE2 GLU 316 B GLU 316 1_555 S MN MN . H MN 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.526 ? metalc ? metalc5 B OD2 ASP 342 B ASP 342 1_555 S MN MN . H MN 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.429 ? metalc ? metalc6 J MN MN . B MN 400 1_555 H SG CYS 76 H CYS 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.489 ? metalc ? metalc7 J MN MN . B MN 400 1_555 H NE2 HIS 282 H HIS 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.562 ? metalc ? metalc8 J MN MN . B MN 400 1_555 H OE2 GLU 316 H GLU 316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.461 ? metalc ? metalc9 J MN MN . B MN 400 1_555 H OD2 ASP 342 H ASP 342 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.608 ? metalc ? metalc10 C NE2 HIS 282 C HIS 282 1_555 K MN MN . C MN 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.576 ? metalc ? metalc11 C OE2 GLU 316 C GLU 316 1_555 K MN MN . C MN 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? metalc ? metalc12 C OD2 ASP 342 C ASP 342 1_555 K MN MN . C MN 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? metalc ? metalc13 D SG CYS 76 D CYS 76 1_555 M MN MN . D MN 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.617 ? metalc ? metalc14 D OE2 GLU 316 D GLU 316 1_555 M MN MN . D MN 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.542 ? metalc ? metalc15 D OD2 ASP 342 D ASP 342 1_555 M MN MN . D MN 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? metalc ? metalc16 E NE2 HIS 282 E HIS 282 1_555 O MN MN . E MN 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.751 ? metalc ? metalc17 E OE2 GLU 316 E GLU 316 1_555 O MN MN . E MN 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.379 ? metalc ? metalc18 E OD2 ASP 342 E ASP 342 1_555 O MN MN . E MN 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? metalc ? metalc19 F SG CYS 76 F CYS 76 1_555 P MN MN . F MN 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.771 ? metalc ? metalc20 F OE2 GLU 316 F GLU 316 1_555 P MN MN . F MN 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.196 ? metalc ? metalc21 F OD2 ASP 342 F ASP 342 1_555 P MN MN . F MN 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.52 ? metalc ? metalc22 G SG CYS 76 G CYS 76 1_555 Q MN MN . G MN 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.726 ? metalc ? metalc23 G NE2 HIS 282 G HIS 282 1_555 Q MN MN . G MN 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? metalc ? metalc24 G OE2 GLU 316 G GLU 316 1_555 Q MN MN . G MN 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? metalc ? metalc25 G OD2 ASP 342 G ASP 342 1_555 Q MN MN . G MN 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.458 ? # _chem_comp.formula 'C9 H11 N O2' _chem_comp.formula_weight 165.189 _chem_comp.id PHE _chem_comp.mon_nstd_flag y _chem_comp.name PHENYLALANINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA PHE sing 237 n n N H PHE sing 238 n n N H2 PHE sing 239 n n CA C PHE sing 240 n n CA CB PHE sing 241 n n CA HA PHE sing 242 n n C O PHE doub 243 n n C OXT PHE sing 244 n n CB CG PHE sing 245 n n CB HB2 PHE sing 246 n n CB HB3 PHE sing 247 n n CG CD1 PHE doub 248 n y CG CD2 PHE sing 249 n y CD1 CE1 PHE sing 250 n y CD1 HD1 PHE sing 251 n n CD2 CE2 PHE doub 252 n y CD2 HD2 PHE sing 253 n n CE1 CZ PHE doub 254 n y CE1 HE1 PHE sing 255 n n CE2 CZ PHE sing 256 n y CE2 HE2 PHE sing 257 n n CZ HZ PHE sing 258 n n OXT HXT PHE sing 259 n n # _atom_sites.entry_id 1OFR _atom_sites.fract_transf_matrix[1][1] 0.012152 _atom_sites.fract_transf_matrix[1][2] -0.003091 _atom_sites.fract_transf_matrix[1][3] 0.000404 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010973 _atom_sites.fract_transf_matrix[2][3] -0.005017 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01049 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 MN A 1 400 400 MN MN . J 2 MN B 1 400 400 MN MN . K 2 MN C 1 400 400 MN MN . L 3 PHE C 1 1002 1002 PHE PHE . M 2 MN D 1 400 400 MN MN . N 3 PHE D 1 1002 1002 PHE PHE . O 2 MN E 1 400 400 MN MN . P 2 MN F 1 400 400 MN MN . Q 2 MN G 1 400 400 MN MN . R 3 PHE G 1 1002 1002 PHE PHE . S 2 MN H 1 400 400 MN MN . T 3 PHE H 1 1002 1002 PHE PHE . U 4 HOH A 1 2001 2001 HOH HOH . U 4 HOH A 2 2002 2002 HOH HOH . U 4 HOH A 3 2003 2003 HOH HOH . U 4 HOH A 4 2004 2004 HOH HOH . U 4 HOH A 5 2005 2005 HOH HOH . U 4 HOH A 6 2006 2006 HOH HOH . V 4 HOH B 1 2001 2001 HOH HOH . V 4 HOH B 2 2002 2002 HOH HOH . V 4 HOH B 3 2003 2003 HOH HOH . V 4 HOH B 4 2004 2004 HOH HOH . W 4 HOH C 1 2001 2001 HOH HOH . W 4 HOH C 2 2002 2002 HOH HOH . W 4 HOH C 3 2003 2003 HOH HOH . W 4 HOH C 4 2004 2004 HOH HOH . W 4 HOH C 5 2005 2005 HOH HOH . X 4 HOH D 1 2001 2001 HOH HOH . X 4 HOH D 2 2002 2002 HOH HOH . X 4 HOH D 3 2003 2003 HOH HOH . X 4 HOH D 4 2004 2004 HOH HOH . X 4 HOH D 5 2005 2005 HOH HOH . Y 4 HOH E 1 2001 2001 HOH HOH . Y 4 HOH E 2 2002 2002 HOH HOH . Z 4 HOH F 1 2001 2001 HOH HOH . Z 4 HOH F 2 2002 2002 HOH HOH . Z 4 HOH F 3 2003 2003 HOH HOH . Z 4 HOH F 4 2004 2004 HOH HOH . AA 4 HOH G 1 2001 2001 HOH HOH . AA 4 HOH G 2 2002 2002 HOH HOH . AA 4 HOH G 3 2003 2003 HOH HOH . BA 4 HOH H 1 2001 2001 HOH HOH . BA 4 HOH H 2 2002 2002 HOH HOH . BA 4 HOH H 3 2003 2003 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N PHE . . . T 3 85.131 43.364 74.614 1 52.59 ? N PHE 1002 H 1 HETATM 2 C CA PHE . . . T 3 84.86 42.546 75.828 1 52.9 ? CA PHE 1002 H 1 HETATM 3 C C PHE . . . T 3 85.981 41.544 76.078 1 53.15 ? C PHE 1002 H 1 HETATM 4 O O PHE . . . T 3 86.379 40.867 75.114 1 53.99 ? O PHE 1002 H 1 HETATM 5 C CB PHE . . . T 3 83.523 41.825 75.668 1 52.3 ? CB PHE 1002 H 1 HETATM 6 C CG PHE . . . T 3 82.368 42.762 75.477 1 54.17 ? CG PHE 1002 H 1 HETATM 7 C CD1 PHE . . . T 3 81.562 42.683 74.343 1 54.69 ? CD1 PHE 1002 H 1 HETATM 8 C CD2 PHE . . . T 3 82.095 43.739 76.426 1 54.52 ? CD2 PHE 1002 H 1 HETATM 9 C CE1 PHE . . . T 3 80.499 43.563 74.161 1 54.46 ? CE1 PHE 1002 H 1 HETATM 10 C CE2 PHE . . . T 3 81.035 44.625 76.255 1 55.62 ? CE2 PHE 1002 H 1 HETATM 11 C CZ PHE . . . T 3 80.235 44.537 75.121 1 55.18 ? CZ PHE 1002 H 1 HETATM 12 O OXT PHE . . . T 3 86.454 41.448 77.232 1 54.48 ? OXT PHE 1002 H 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 12 #