data_1OFR
#
_model_server_result.job_id            W2qYquFUSJEAXa1wHeum1A 
_model_server_result.datetime_utc      '2024-11-23 11:10:49' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1ofr 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":400}' 
#
_entry.id    1OFR 
#
_exptl.entry_id    1OFR 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              54.938 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MANGANESE (II) ION' 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         65.14 
_cell.angle_beta          85.68 
_cell.angle_gamma         75.73 
_cell.entry_id            1OFR 
_cell.length_a            82.287 
_cell.length_b            94.034 
_cell.length_c            105.121 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
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_symmetry.entry_id                 1OFR 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PQS dimeric 2 author_and_software_defined_assembly 1 
PQS dimeric 2 author_and_software_defined_assembly 2 
PQS dimeric 2 author_and_software_defined_assembly 3 
PQS dimeric 2 author_and_software_defined_assembly 4 
PISA tetrameric 4 software_defined_assembly 5 
PISA tetrameric 4 software_defined_assembly 6 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,I,J,U,V 1 1 
C,D,K,L,M,N,W,X 2 1 
E,F,O,P,Y,Z 3 1 
G,H,Q,R,S,T,AA,BA 4 1 
E,F,G,H,O,P,Q,R,S,T,Y,Z,AA,BA 5 1 
A,B,C,D,I,J,K,L,M,N,U,V,W,X 6 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 I N N 
? 2 J N N 
? 2 K N N 
? 2 M N N 
? 2 O N N 
? 2 P N N 
? 2 Q N N 
? 2 S N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 282 A HIS 282 1_555 I MN MN . A MN 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.628 ? 
metalc ? metalc2 A OE2 GLU 316 A GLU 316 1_555 I MN MN . A MN 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? 
metalc ? metalc3 A OD2 ASP 342 A ASP 342 1_555 I MN MN . A MN 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? 
metalc ? metalc4 B OE2 GLU 316 B GLU 316 1_555 S MN MN . H MN 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.526 ? 
metalc ? metalc5 B OD2 ASP 342 B ASP 342 1_555 S MN MN . H MN 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.429 ? 
metalc ? metalc6 J MN MN . B MN 400 1_555 H SG CYS 76 H CYS 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.489 ? 
metalc ? metalc7 J MN MN . B MN 400 1_555 H NE2 HIS 282 H HIS 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.562 ? 
metalc ? metalc8 J MN MN . B MN 400 1_555 H OE2 GLU 316 H GLU 316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.461 ? 
metalc ? metalc9 J MN MN . B MN 400 1_555 H OD2 ASP 342 H ASP 342 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.608 ? 
metalc ? metalc10 C NE2 HIS 282 C HIS 282 1_555 K MN MN . C MN 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.576 ? 
metalc ? metalc11 C OE2 GLU 316 C GLU 316 1_555 K MN MN . C MN 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? 
metalc ? metalc12 C OD2 ASP 342 C ASP 342 1_555 K MN MN . C MN 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? 
metalc ? metalc13 D SG CYS 76 D CYS 76 1_555 M MN MN . D MN 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.617 ? 
metalc ? metalc14 D OE2 GLU 316 D GLU 316 1_555 M MN MN . D MN 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.542 ? 
metalc ? metalc15 D OD2 ASP 342 D ASP 342 1_555 M MN MN . D MN 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? 
metalc ? metalc16 E NE2 HIS 282 E HIS 282 1_555 O MN MN . E MN 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.751 ? 
metalc ? metalc17 E OE2 GLU 316 E GLU 316 1_555 O MN MN . E MN 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.379 ? 
metalc ? metalc18 E OD2 ASP 342 E ASP 342 1_555 O MN MN . E MN 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? 
metalc ? metalc19 F SG CYS 76 F CYS 76 1_555 P MN MN . F MN 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.771 ? 
metalc ? metalc20 F OE2 GLU 316 F GLU 316 1_555 P MN MN . F MN 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.196 ? 
metalc ? metalc21 F OD2 ASP 342 F ASP 342 1_555 P MN MN . F MN 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.52 ? 
metalc ? metalc22 G SG CYS 76 G CYS 76 1_555 Q MN MN . G MN 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.726 ? 
metalc ? metalc23 G NE2 HIS 282 G HIS 282 1_555 Q MN MN . G MN 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? 
metalc ? metalc24 G OE2 GLU 316 G GLU 316 1_555 Q MN MN . G MN 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? 
metalc ? metalc25 G OD2 ASP 342 G ASP 342 1_555 Q MN MN . G MN 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.458 ? 
#
_chem_comp.formula           'Mn 2' 
_chem_comp.formula_weight    54.938 
_chem_comp.id                MN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MANGANESE (II) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     1OFR 
_atom_sites.fract_transf_matrix[1][1]    0.012152 
_atom_sites.fract_transf_matrix[1][2]    -0.003091 
_atom_sites.fract_transf_matrix[1][3]    0.000404 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010973 
_atom_sites.fract_transf_matrix[2][3]    -0.005017 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01049 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 2 MN A 1 400 400 MN MN . 
J 2 MN B 1 400 400 MN MN . 
K 2 MN C 1 400 400 MN MN . 
L 3 PHE C 1 1002 1002 PHE PHE . 
M 2 MN D 1 400 400 MN MN . 
N 3 PHE D 1 1002 1002 PHE PHE . 
O 2 MN E 1 400 400 MN MN . 
P 2 MN F 1 400 400 MN MN . 
Q 2 MN G 1 400 400 MN MN . 
R 3 PHE G 1 1002 1002 PHE PHE . 
S 2 MN H 1 400 400 MN MN . 
T 3 PHE H 1 1002 1002 PHE PHE . 
U 4 HOH A 1 2001 2001 HOH HOH . 
U 4 HOH A 2 2002 2002 HOH HOH . 
U 4 HOH A 3 2003 2003 HOH HOH . 
U 4 HOH A 4 2004 2004 HOH HOH . 
U 4 HOH A 5 2005 2005 HOH HOH . 
U 4 HOH A 6 2006 2006 HOH HOH . 
V 4 HOH B 1 2001 2001 HOH HOH . 
V 4 HOH B 2 2002 2002 HOH HOH . 
V 4 HOH B 3 2003 2003 HOH HOH . 
V 4 HOH B 4 2004 2004 HOH HOH . 
W 4 HOH C 1 2001 2001 HOH HOH . 
W 4 HOH C 2 2002 2002 HOH HOH . 
W 4 HOH C 3 2003 2003 HOH HOH . 
W 4 HOH C 4 2004 2004 HOH HOH . 
W 4 HOH C 5 2005 2005 HOH HOH . 
X 4 HOH D 1 2001 2001 HOH HOH . 
X 4 HOH D 2 2002 2002 HOH HOH . 
X 4 HOH D 3 2003 2003 HOH HOH . 
X 4 HOH D 4 2004 2004 HOH HOH . 
X 4 HOH D 5 2005 2005 HOH HOH . 
Y 4 HOH E 1 2001 2001 HOH HOH . 
Y 4 HOH E 2 2002 2002 HOH HOH . 
Z 4 HOH F 1 2001 2001 HOH HOH . 
Z 4 HOH F 2 2002 2002 HOH HOH . 
Z 4 HOH F 3 2003 2003 HOH HOH . 
Z 4 HOH F 4 2004 2004 HOH HOH . 
AA 4 HOH G 1 2001 2001 HOH HOH . 
AA 4 HOH G 2 2002 2002 HOH HOH . 
AA 4 HOH G 3 2003 2003 HOH HOH . 
BA 4 HOH H 1 2001 2001 HOH HOH . 
BA 4 HOH H 2 2002 2002 HOH HOH . 
BA 4 HOH H 3 2003 2003 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MN 
_atom_site.label_atom_id         MN 
_atom_site.label_comp_id         MN 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         M 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               27.768 
_atom_site.Cartn_y               8.559 
_atom_site.Cartn_z               97.309 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        36.87 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MN 
_atom_site.auth_comp_id          MN 
_atom_site.auth_seq_id           400 
_atom_site.auth_asym_id          D 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    24 
_model_server_stats.query_time_ms           291 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           1 
#