data_1OFV # _model_server_result.job_id kr2f4yD6VYZerdLcagR_Tw _model_server_result.datetime_utc '2024-10-14 08:24:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ofv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":170}' # _entry.id 1OFV # _exptl.entry_id 1OFV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1OFV _cell.length_a 57.08 _cell.length_b 69.24 _cell.length_c 45.55 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1OFV _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 83 n n N1 C10 FMN doub 84 n n C2 O2 FMN doub 85 n n C2 N3 FMN sing 86 n n N3 C4 FMN sing 87 n n N3 HN3 FMN sing 88 n n C4 O4 FMN doub 89 n n C4 C4A FMN sing 90 n n C4A N5 FMN doub 91 n n C4A C10 FMN sing 92 n n N5 C5A FMN sing 93 n n C5A C6 FMN doub 94 n y C5A C9A FMN sing 95 n y C6 C7 FMN sing 96 n y C6 H6 FMN sing 97 n n C7 C7M FMN sing 98 n n C7 C8 FMN doub 99 n y C7M HM71 FMN sing 100 n n C7M HM72 FMN sing 101 n n C7M HM73 FMN sing 102 n n C8 C8M FMN sing 103 n n C8 C9 FMN sing 104 n y C8M HM81 FMN sing 105 n n C8M HM82 FMN sing 106 n n C8M HM83 FMN sing 107 n n C9 C9A FMN doub 108 n y C9 H9 FMN sing 109 n n C9A N10 FMN sing 110 n n N10 C10 FMN sing 111 n n N10 C1' FMN sing 112 n n C1' C2' FMN sing 113 n n C1' "H1'1" FMN sing 114 n n C1' "H1'2" FMN sing 115 n n C2' O2' FMN sing 116 n n C2' C3' FMN sing 117 n n C2' H2' FMN sing 118 n n O2' HO2' FMN sing 119 n n C3' O3' FMN sing 120 n n C3' C4' FMN sing 121 n n C3' H3' FMN sing 122 n n O3' HO3' FMN sing 123 n n C4' O4' FMN sing 124 n n C4' C5' FMN sing 125 n n C4' H4' FMN sing 126 n n O4' HO4' FMN sing 127 n n C5' O5' FMN sing 128 n n C5' "H5'1" FMN sing 129 n n C5' "H5'2" FMN sing 130 n n O5' P FMN sing 131 n n P O1P FMN doub 132 n n P O2P FMN sing 133 n n P O3P FMN sing 134 n n O2P HOP2 FMN sing 135 n n O3P HOP3 FMN sing 136 n n # _atom_sites.entry_id 1OFV _atom_sites.fract_transf_matrix[1][1] 0.017519 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014442 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021954 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FMN A 1 170 170 FMN FMN . C 3 HOH A 1 171 171 HOH HOH . C 3 HOH A 2 172 172 HOH HOH . C 3 HOH A 3 173 173 HOH HOH . C 3 HOH A 4 174 174 HOH HOH . C 3 HOH A 5 175 175 HOH HOH . C 3 HOH A 6 176 176 HOH HOH . C 3 HOH A 7 177 177 HOH HOH . C 3 HOH A 8 178 178 HOH HOH . C 3 HOH A 9 179 179 HOH HOH . C 3 HOH A 10 180 180 HOH HOH . C 3 HOH A 11 181 181 HOH HOH . C 3 HOH A 12 182 182 HOH HOH . C 3 HOH A 13 183 183 HOH HOH . C 3 HOH A 14 184 184 HOH HOH . C 3 HOH A 15 185 185 HOH HOH . C 3 HOH A 16 186 186 HOH HOH . C 3 HOH A 17 187 187 HOH HOH . C 3 HOH A 18 188 188 HOH HOH . C 3 HOH A 19 189 189 HOH HOH . C 3 HOH A 20 190 190 HOH HOH . C 3 HOH A 21 191 191 HOH HOH . C 3 HOH A 22 192 192 HOH HOH . C 3 HOH A 23 193 193 HOH HOH . C 3 HOH A 24 194 194 HOH HOH . C 3 HOH A 25 195 195 HOH HOH . C 3 HOH A 26 196 196 HOH HOH . C 3 HOH A 27 197 197 HOH HOH . C 3 HOH A 28 198 198 HOH HOH . C 3 HOH A 29 199 199 HOH HOH . C 3 HOH A 30 200 200 HOH HOH . C 3 HOH A 31 201 201 HOH HOH . C 3 HOH A 32 202 202 HOH HOH . C 3 HOH A 33 203 203 HOH HOH . C 3 HOH A 34 204 204 HOH HOH . C 3 HOH A 35 205 205 HOH HOH . C 3 HOH A 36 206 206 HOH HOH . C 3 HOH A 37 207 207 HOH HOH . C 3 HOH A 38 208 208 HOH HOH . C 3 HOH A 39 209 209 HOH HOH . C 3 HOH A 40 210 210 HOH HOH . C 3 HOH A 41 211 211 HOH HOH . C 3 HOH A 42 212 212 HOH HOH . C 3 HOH A 43 213 213 HOH HOH . C 3 HOH A 44 214 214 HOH HOH . C 3 HOH A 45 215 215 HOH HOH . C 3 HOH A 46 216 216 HOH HOH . C 3 HOH A 47 217 217 HOH HOH . C 3 HOH A 48 218 218 HOH HOH . C 3 HOH A 49 219 219 HOH HOH . C 3 HOH A 50 220 220 HOH HOH . C 3 HOH A 51 221 221 HOH HOH . C 3 HOH A 52 222 222 HOH HOH . C 3 HOH A 53 223 223 HOH HOH . C 3 HOH A 54 224 224 HOH HOH . C 3 HOH A 55 225 225 HOH HOH . C 3 HOH A 56 226 226 HOH HOH . C 3 HOH A 57 227 227 HOH HOH . C 3 HOH A 58 228 228 HOH HOH . C 3 HOH A 59 229 229 HOH HOH . C 3 HOH A 60 230 230 HOH HOH . C 3 HOH A 61 231 231 HOH HOH . C 3 HOH A 62 232 232 HOH HOH . C 3 HOH A 63 233 233 HOH HOH . C 3 HOH A 64 234 234 HOH HOH . C 3 HOH A 65 235 235 HOH HOH . C 3 HOH A 66 236 236 HOH HOH . C 3 HOH A 67 237 237 HOH HOH . C 3 HOH A 68 238 238 HOH HOH . C 3 HOH A 69 239 239 HOH HOH . C 3 HOH A 70 240 240 HOH HOH . C 3 HOH A 71 241 241 HOH HOH . C 3 HOH A 72 242 242 HOH HOH . C 3 HOH A 73 243 243 HOH HOH . C 3 HOH A 74 244 244 HOH HOH . C 3 HOH A 75 245 245 HOH HOH . C 3 HOH A 76 246 246 HOH HOH . C 3 HOH A 77 247 247 HOH HOH . C 3 HOH A 78 248 248 HOH HOH . C 3 HOH A 79 249 249 HOH HOH . C 3 HOH A 80 250 250 HOH HOH . C 3 HOH A 81 251 251 HOH HOH . C 3 HOH A 82 252 252 HOH HOH . C 3 HOH A 83 253 253 HOH HOH . C 3 HOH A 84 254 254 HOH HOH . C 3 HOH A 85 255 255 HOH HOH . C 3 HOH A 86 256 256 HOH HOH . C 3 HOH A 87 257 257 HOH HOH . C 3 HOH A 88 258 258 HOH HOH . C 3 HOH A 89 259 259 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . B 2 14.425 21.895 41.853 1 9.6 ? N1 FMN 170 A 1 HETATM 2 C C2 FMN . . . B 2 15.327 21.868 42.881 1 9.41 ? C2 FMN 170 A 1 HETATM 3 O O2 FMN . . . B 2 16.536 22.035 42.6 1 10.92 ? O2 FMN 170 A 1 HETATM 4 N N3 FMN . . . B 2 14.966 21.581 44.18 1 10 ? N3 FMN 170 A 1 HETATM 5 C C4 FMN . . . B 2 13.636 21.308 44.575 1 9.74 ? C4 FMN 170 A 1 HETATM 6 O O4 FMN . . . B 2 13.399 21.062 45.754 1 10.06 ? O4 FMN 170 A 1 HETATM 7 C C4A FMN . . . B 2 12.671 21.359 43.472 1 9.27 ? C4A FMN 170 A 1 HETATM 8 N N5 FMN . . . B 2 11.405 21.154 43.763 1 10.42 ? N5 FMN 170 A 1 HETATM 9 C C5A FMN . . . B 2 10.511 21.307 42.731 1 9.71 ? C5A FMN 170 A 1 HETATM 10 C C6 FMN . . . B 2 9.115 21.258 43.087 1 10.49 ? C6 FMN 170 A 1 HETATM 11 C C7 FMN . . . B 2 8.201 21.433 42.08 1 10.25 ? C7 FMN 170 A 1 HETATM 12 C C7M FMN . . . B 2 6.728 21.41 42.418 1 11.56 ? C7M FMN 170 A 1 HETATM 13 C C8 FMN . . . B 2 8.598 21.628 40.765 1 10.85 ? C8 FMN 170 A 1 HETATM 14 C C8M FMN . . . B 2 7.63 21.864 39.635 1 11.74 ? C8M FMN 170 A 1 HETATM 15 C C9 FMN . . . B 2 9.951 21.683 40.381 1 10.04 ? C9 FMN 170 A 1 HETATM 16 C C9A FMN . . . B 2 10.888 21.546 41.408 1 9.84 ? C9A FMN 170 A 1 HETATM 17 N N10 FMN . . . B 2 12.281 21.644 41.111 1 9.31 ? N10 FMN 170 A 1 HETATM 18 C C10 FMN . . . B 2 13.143 21.601 42.157 1 8.92 ? C10 FMN 170 A 1 HETATM 19 C C1' FMN . . . B 2 12.677 21.918 39.75 1 9.39 ? C1' FMN 170 A 1 HETATM 20 C C2' FMN . . . B 2 12.782 20.688 38.859 1 10.48 ? C2' FMN 170 A 1 HETATM 21 O O2' FMN . . . B 2 13.729 19.729 39.383 1 11.27 ? O2' FMN 170 A 1 HETATM 22 C C3' FMN . . . B 2 13.042 20.807 37.421 1 11.44 ? C3' FMN 170 A 1 HETATM 23 O O3' FMN . . . B 2 11.93 21.537 36.935 1 12.95 ? O3' FMN 170 A 1 HETATM 24 C C4' FMN . . . B 2 13.586 19.804 36.434 1 10.84 ? C4' FMN 170 A 1 HETATM 25 O O4' FMN . . . B 2 13.886 20.417 35.218 1 10.17 ? O4' FMN 170 A 1 HETATM 26 C C5' FMN . . . B 2 12.503 18.705 36.447 1 12.28 ? C5' FMN 170 A 1 HETATM 27 O O5' FMN . . . B 2 13.208 17.612 35.871 1 11.75 ? O5' FMN 170 A 1 HETATM 28 P P FMN . . . B 2 12.444 16.313 35.268 1 11.81 ? P FMN 170 A 1 HETATM 29 O O1P FMN . . . B 2 13.539 15.312 34.796 1 12.21 ? O1P FMN 170 A 1 HETATM 30 O O2P FMN . . . B 2 11.659 16.689 34.065 1 11.65 ? O2P FMN 170 A 1 HETATM 31 O O3P FMN . . . B 2 11.737 15.759 36.427 1 12.24 ? O3P FMN 170 A 1 # _model_server_stats.io_time_ms 75 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 31 #