data_1OGE
#
_model_server_result.job_id            492bNqpOFPQei2ZIvSdqig 
_model_server_result.datetime_utc      '2024-11-30 20:13:25' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1oge 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":1132}' 
#
_entry.id    1OGE 
#
_exptl.entry_id    1OGE 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              230.11 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            5-O-phosphono-beta-D-ribofuranose 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          128.72 
_cell.angle_gamma         90 
_cell.entry_id            1OGE 
_cell.length_a            123.807 
_cell.length_b            108.556 
_cell.length_c            83.532 
_cell.Z_PDB               20 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1OGE 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PQS 
_pdbx_struct_assembly.oligomeric_details    decameric 
_pdbx_struct_assembly.oligomeric_count      10 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 123.807 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 G N N 
? 3 H N N 
? 3 I N N 
? 3 K N N 
? 3 L N N 
#
_chem_comp.formula           'C5 H11 O8 P' 
_chem_comp.formula_weight    230.11 
_chem_comp.id                RP5 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              5-O-phosphono-beta-D-ribofuranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     '[(2R,3S,4S,5R)-3,4,5-TRIHYDROXYTETRAHYDROFURAN-2-YL]METHYL DIHYDROGEN PHOSPHATE;5-O-phosphono-beta-D-ribose;5-O-phosphono-D-ribose;5-O-phosphono-ribose' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O4 RP5 sing 277 n n 
C1 C2 RP5 sing 278 n n 
C1 O1 RP5 sing 279 n n 
C1 H1 RP5 sing 280 n n 
O4 C4 RP5 sing 281 n n 
C2 O2 RP5 sing 282 n n 
C2 C3 RP5 sing 283 n n 
C2 H2 RP5 sing 284 n n 
O2 HO2 RP5 sing 285 n n 
C3 O3 RP5 sing 286 n n 
C3 C4 RP5 sing 287 n n 
C3 H3 RP5 sing 288 n n 
O3 HO3 RP5 sing 289 n n 
C4 C5 RP5 sing 290 n n 
C4 H4 RP5 sing 291 n n 
C5 O5 RP5 sing 292 n n 
C5 H51 RP5 sing 293 n n 
C5 H52 RP5 sing 294 n n 
O5 P' RP5 sing 295 n n 
P' O1X RP5 doub 296 n n 
P' O2X RP5 sing 297 n n 
P' O3X RP5 sing 298 n n 
O2X HO' RP5 sing 299 n n 
O3X HOA RP5 sing 300 n n 
O1 HO1 RP5 sing 301 n n 
#
_pdbx_chem_comp_identifier.comp_id            RP5 
_pdbx_chem_comp_identifier.identifier         b-D-Ribf5PO3 
_pdbx_chem_comp_identifier.type               'IUPAC CARBOHYDRATE SYMBOL' 
_pdbx_chem_comp_identifier.program            PDB-CARE 
_pdbx_chem_comp_identifier.program_version    1 
#
_atom_sites.entry_id                     1OGE 
_atom_sites.fract_transf_matrix[1][1]    0.008077 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.006476 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009212 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015344 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 2 CL A 1 1132 1132 CL CL . 
G 3 RP5 A 1 1133 1133 RP5 RP5 . 
H 3 RP5 B 1 1132 1132 RP5 RP5 . 
I 3 RP5 C 1 1132 1132 RP5 RP5 . 
J 2 CL D 1 1132 1132 CL CL . 
K 3 RP5 D 1 1133 1133 RP5 RP5 . 
L 3 RP5 E 1 1132 1132 RP5 RP5 . 
M 4 HOH A 1 2001 2001 HOH HOH . 
M 4 HOH A 2 2002 2002 HOH HOH . 
M 4 HOH A 3 2003 2003 HOH HOH . 
M 4 HOH A 4 2004 2004 HOH HOH . 
M 4 HOH A 5 2005 2005 HOH HOH . 
M 4 HOH A 6 2006 2006 HOH HOH . 
M 4 HOH A 7 2007 2007 HOH HOH . 
M 4 HOH A 8 2008 2008 HOH HOH . 
M 4 HOH A 9 2009 2009 HOH HOH . 
M 4 HOH A 10 2010 2010 HOH HOH . 
M 4 HOH A 11 2011 2011 HOH HOH . 
M 4 HOH A 12 2012 2012 HOH HOH . 
M 4 HOH A 13 2013 2013 HOH HOH . 
M 4 HOH A 14 2014 2014 HOH HOH . 
M 4 HOH A 15 2015 2015 HOH HOH . 
M 4 HOH A 16 2016 2016 HOH HOH . 
M 4 HOH A 17 2017 2017 HOH HOH . 
M 4 HOH A 18 2018 2018 HOH HOH . 
M 4 HOH A 19 2019 2019 HOH HOH . 
M 4 HOH A 20 2020 2020 HOH HOH . 
M 4 HOH A 21 2021 2021 HOH HOH . 
M 4 HOH A 22 2022 2022 HOH HOH . 
M 4 HOH A 23 2023 2023 HOH HOH . 
M 4 HOH A 24 2024 2024 HOH HOH . 
M 4 HOH A 25 2025 2025 HOH HOH . 
M 4 HOH A 26 2026 2026 HOH HOH . 
M 4 HOH A 27 2027 2027 HOH HOH . 
M 4 HOH A 28 2028 2028 HOH HOH . 
M 4 HOH A 29 2029 2029 HOH HOH . 
M 4 HOH A 30 2030 2030 HOH HOH . 
N 4 HOH B 1 2001 2001 HOH HOH . 
N 4 HOH B 2 2002 2002 HOH HOH . 
N 4 HOH B 3 2003 2003 HOH HOH . 
N 4 HOH B 4 2004 2004 HOH HOH . 
N 4 HOH B 5 2005 2005 HOH HOH . 
N 4 HOH B 6 2006 2006 HOH HOH . 
N 4 HOH B 7 2007 2007 HOH HOH . 
N 4 HOH B 8 2008 2008 HOH HOH . 
N 4 HOH B 9 2009 2009 HOH HOH . 
N 4 HOH B 10 2010 2010 HOH HOH . 
N 4 HOH B 11 2011 2011 HOH HOH . 
N 4 HOH B 12 2012 2012 HOH HOH . 
N 4 HOH B 13 2013 2013 HOH HOH . 
N 4 HOH B 14 2014 2014 HOH HOH . 
N 4 HOH B 15 2015 2015 HOH HOH . 
N 4 HOH B 16 2016 2016 HOH HOH . 
N 4 HOH B 17 2017 2017 HOH HOH . 
N 4 HOH B 18 2018 2018 HOH HOH . 
N 4 HOH B 19 2019 2019 HOH HOH . 
N 4 HOH B 20 2020 2020 HOH HOH . 
N 4 HOH B 21 2021 2021 HOH HOH . 
N 4 HOH B 22 2022 2022 HOH HOH . 
N 4 HOH B 23 2023 2023 HOH HOH . 
N 4 HOH B 24 2024 2024 HOH HOH . 
N 4 HOH B 25 2025 2025 HOH HOH . 
N 4 HOH B 26 2026 2026 HOH HOH . 
O 4 HOH C 1 2001 2001 HOH HOH . 
O 4 HOH C 2 2002 2002 HOH HOH . 
O 4 HOH C 3 2003 2003 HOH HOH . 
O 4 HOH C 4 2004 2004 HOH HOH . 
O 4 HOH C 5 2005 2005 HOH HOH . 
O 4 HOH C 6 2006 2006 HOH HOH . 
O 4 HOH C 7 2007 2007 HOH HOH . 
O 4 HOH C 8 2008 2008 HOH HOH . 
O 4 HOH C 9 2009 2009 HOH HOH . 
O 4 HOH C 10 2010 2010 HOH HOH . 
O 4 HOH C 11 2011 2011 HOH HOH . 
O 4 HOH C 12 2012 2012 HOH HOH . 
O 4 HOH C 13 2013 2013 HOH HOH . 
O 4 HOH C 14 2014 2014 HOH HOH . 
O 4 HOH C 15 2015 2015 HOH HOH . 
O 4 HOH C 16 2016 2016 HOH HOH . 
O 4 HOH C 17 2017 2017 HOH HOH . 
O 4 HOH C 18 2018 2018 HOH HOH . 
O 4 HOH C 19 2019 2019 HOH HOH . 
O 4 HOH C 20 2020 2020 HOH HOH . 
O 4 HOH C 21 2021 2021 HOH HOH . 
O 4 HOH C 22 2022 2022 HOH HOH . 
O 4 HOH C 23 2023 2023 HOH HOH . 
O 4 HOH C 24 2024 2024 HOH HOH . 
O 4 HOH C 25 2025 2025 HOH HOH . 
O 4 HOH C 26 2026 2026 HOH HOH . 
O 4 HOH C 27 2027 2027 HOH HOH . 
O 4 HOH C 28 2028 2028 HOH HOH . 
O 4 HOH C 29 2029 2029 HOH HOH . 
O 4 HOH C 30 2030 2030 HOH HOH . 
O 4 HOH C 31 2031 2031 HOH HOH . 
O 4 HOH C 32 2032 2032 HOH HOH . 
O 4 HOH C 33 2033 2033 HOH HOH . 
O 4 HOH C 34 2034 2034 HOH HOH . 
O 4 HOH C 35 2035 2035 HOH HOH . 
O 4 HOH C 36 2036 2036 HOH HOH . 
O 4 HOH C 37 2037 2037 HOH HOH . 
O 4 HOH C 38 2038 2038 HOH HOH . 
O 4 HOH C 39 2039 2039 HOH HOH . 
O 4 HOH C 40 2040 2040 HOH HOH . 
O 4 HOH C 41 2041 2041 HOH HOH . 
O 4 HOH C 42 2042 2042 HOH HOH . 
O 4 HOH C 43 2043 2043 HOH HOH . 
O 4 HOH C 44 2044 2044 HOH HOH . 
O 4 HOH C 45 2045 2045 HOH HOH . 
O 4 HOH C 46 2046 2046 HOH HOH . 
O 4 HOH C 47 2047 2047 HOH HOH . 
O 4 HOH C 48 2048 2048 HOH HOH . 
O 4 HOH C 49 2049 2049 HOH HOH . 
P 4 HOH D 1 2001 2001 HOH HOH . 
P 4 HOH D 2 2002 2002 HOH HOH . 
P 4 HOH D 3 2003 2003 HOH HOH . 
P 4 HOH D 4 2004 2004 HOH HOH . 
P 4 HOH D 5 2005 2005 HOH HOH . 
P 4 HOH D 6 2006 2006 HOH HOH . 
P 4 HOH D 7 2007 2007 HOH HOH . 
P 4 HOH D 8 2008 2008 HOH HOH . 
P 4 HOH D 9 2009 2009 HOH HOH . 
P 4 HOH D 10 2010 2010 HOH HOH . 
P 4 HOH D 11 2011 2011 HOH HOH . 
P 4 HOH D 12 2012 2012 HOH HOH . 
P 4 HOH D 13 2013 2013 HOH HOH . 
P 4 HOH D 14 2014 2014 HOH HOH . 
P 4 HOH D 15 2015 2015 HOH HOH . 
P 4 HOH D 16 2016 2016 HOH HOH . 
P 4 HOH D 17 2017 2017 HOH HOH . 
P 4 HOH D 18 2018 2018 HOH HOH . 
P 4 HOH D 19 2019 2019 HOH HOH . 
P 4 HOH D 20 2020 2020 HOH HOH . 
P 4 HOH D 21 2021 2021 HOH HOH . 
P 4 HOH D 22 2022 2022 HOH HOH . 
P 4 HOH D 23 2023 2023 HOH HOH . 
P 4 HOH D 24 2024 2024 HOH HOH . 
P 4 HOH D 25 2025 2025 HOH HOH . 
P 4 HOH D 26 2026 2026 HOH HOH . 
P 4 HOH D 27 2027 2027 HOH HOH . 
P 4 HOH D 28 2028 2028 HOH HOH . 
P 4 HOH D 29 2029 2029 HOH HOH . 
P 4 HOH D 30 2030 2030 HOH HOH . 
P 4 HOH D 31 2031 2031 HOH HOH . 
P 4 HOH D 32 2032 2032 HOH HOH . 
P 4 HOH D 33 2033 2033 HOH HOH . 
P 4 HOH D 34 2034 2034 HOH HOH . 
P 4 HOH D 35 2035 2035 HOH HOH . 
P 4 HOH D 36 2036 2036 HOH HOH . 
P 4 HOH D 37 2037 2037 HOH HOH . 
P 4 HOH D 38 2038 2038 HOH HOH . 
P 4 HOH D 39 2039 2039 HOH HOH . 
P 4 HOH D 40 2040 2040 HOH HOH . 
P 4 HOH D 41 2041 2041 HOH HOH . 
P 4 HOH D 42 2042 2042 HOH HOH . 
P 4 HOH D 43 2043 2043 HOH HOH . 
Q 4 HOH E 1 2001 2001 HOH HOH . 
Q 4 HOH E 2 2002 2002 HOH HOH . 
Q 4 HOH E 3 2003 2003 HOH HOH . 
Q 4 HOH E 4 2004 2004 HOH HOH . 
Q 4 HOH E 5 2005 2005 HOH HOH . 
Q 4 HOH E 6 2006 2006 HOH HOH . 
Q 4 HOH E 7 2007 2007 HOH HOH . 
Q 4 HOH E 8 2008 2008 HOH HOH . 
Q 4 HOH E 9 2009 2009 HOH HOH . 
Q 4 HOH E 10 2010 2010 HOH HOH . 
Q 4 HOH E 11 2011 2011 HOH HOH . 
Q 4 HOH E 12 2012 2012 HOH HOH . 
Q 4 HOH E 13 2013 2013 HOH HOH . 
Q 4 HOH E 14 2014 2014 HOH HOH . 
Q 4 HOH E 15 2015 2015 HOH HOH . 
Q 4 HOH E 16 2016 2016 HOH HOH . 
Q 4 HOH E 17 2017 2017 HOH HOH . 
Q 4 HOH E 18 2018 2018 HOH HOH . 
Q 4 HOH E 19 2019 2019 HOH HOH . 
Q 4 HOH E 20 2020 2020 HOH HOH . 
Q 4 HOH E 21 2021 2021 HOH HOH . 
Q 4 HOH E 22 2022 2022 HOH HOH . 
Q 4 HOH E 23 2023 2023 HOH HOH . 
Q 4 HOH E 24 2024 2024 HOH HOH . 
Q 4 HOH E 25 2025 2025 HOH HOH . 
Q 4 HOH E 26 2026 2026 HOH HOH . 
Q 4 HOH E 27 2027 2027 HOH HOH . 
Q 4 HOH E 28 2028 2028 HOH HOH . 
Q 4 HOH E 29 2029 2029 HOH HOH . 
Q 4 HOH E 30 2030 2030 HOH HOH . 
Q 4 HOH E 31 2031 2031 HOH HOH . 
Q 4 HOH E 32 2032 2032 HOH HOH . 
Q 4 HOH E 33 2033 2033 HOH HOH . 
Q 4 HOH E 34 2034 2034 HOH HOH . 
Q 4 HOH E 35 2035 2035 HOH HOH . 
Q 4 HOH E 36 2036 2036 HOH HOH . 
Q 4 HOH E 37 2037 2037 HOH HOH . 
Q 4 HOH E 38 2038 2038 HOH HOH . 
Q 4 HOH E 39 2039 2039 HOH HOH . 
Q 4 HOH E 40 2040 2040 HOH HOH . 
Q 4 HOH E 41 2041 2041 HOH HOH . 
Q 4 HOH E 42 2042 2042 HOH HOH . 
Q 4 HOH E 43 2043 2043 HOH HOH . 
Q 4 HOH E 44 2044 2044 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 RP5 . . . H 3 51.162 36.558 25.859 1 86.35 ? C1 RP5 1132 B 1 
HETATM 2 O O4 RP5 . . . H 3 50.853 36.405 27.228 1 87.64 ? O4 RP5 1132 B 1 
HETATM 3 C C2 RP5 . . . H 3 51.73 37.966 25.713 1 86.09 ? C2 RP5 1132 B 1 
HETATM 4 O O2 RP5 . . . H 3 53.106 37.963 26.05 1 85.2 ? O2 RP5 1132 B 1 
HETATM 5 C C3 RP5 . . . H 3 50.953 38.725 26.789 1 86.93 ? C3 RP5 1132 B 1 
HETATM 6 O O3 RP5 . . . H 3 51.755 39.83 27.203 1 85.63 ? O3 RP5 1132 B 1 
HETATM 7 C C4 RP5 . . . H 3 50.717 37.662 27.872 1 88.57 ? C4 RP5 1132 B 1 
HETATM 8 C C5 RP5 . . . H 3 49.32 37.779 28.508 1 91.83 ? C5 RP5 1132 B 1 
HETATM 9 O O5 RP5 . . . H 3 49.153 36.76 29.509 1 95.87 ? O5 RP5 1132 B 1 
HETATM 10 P P' RP5 . . . H 3 49.284 37.269 30.999 1 98.16 ? P' RP5 1132 B 1 
HETATM 11 O O1X RP5 . . . H 3 49.089 36.138 31.922 1 97.52 ? O1X RP5 1132 B 1 
HETATM 12 O O2X RP5 . . . H 3 50.682 37.864 31.209 1 97.82 ? O2X RP5 1132 B 1 
HETATM 13 O O3X RP5 . . . H 3 48.23 38.341 31.293 1 97.44 ? O3X RP5 1132 B 1 
HETATM 14 O O1 RP5 . . . H 3 49.936 36.395 25.195 1 85.88 ? O1 RP5 1132 B 1 
#
_model_server_stats.io_time_ms              43 
_model_server_stats.parse_time_ms           5 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           219 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           14 
#