data_1OGU
#
_model_server_result.job_id            LycgfsGGZnrz_MoJyk8XWA 
_model_server_result.datetime_utc      '2024-11-24 03:01:07' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1ogu 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":1193}' 
#
_entry.id    1OGU 
#
_exptl.entry_id    1OGU 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              108.159 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            MONOTHIOGLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1OGU 
_cell.length_a            73.836 
_cell.length_b            133.676 
_cell.length_c            148.335 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1OGU 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PQS dimeric 2 author_and_software_defined_assembly 1 
PQS dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,I,J 1 1 
C,D,G,H,K,L 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 F N N 
? 4 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C TYR 163 A TYR 159 1_555 A N TPO 164 A TPO 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.344 ? 
covale ? covale2 A C TPO 164 A TPO 160 1_555 A N HIS 165 A HIS 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.36 ? 
covale ? covale3 B SG CYS 21 B CYS 193 1_555 F S1 SGM . B SGM 1193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? 
covale ? covale4 C C TYR 163 C TYR 159 1_555 C N TPO 164 C TPO 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? 
covale ? covale5 C C TPO 164 C TPO 160 1_555 C N HIS 165 C HIS 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.353 ? 
covale ? covale6 D SG CYS 21 D CYS 193 1_555 H S1 SGM . D SGM 1193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? 
#
_chem_comp.formula           'C3 H8 O2 S' 
_chem_comp.formula_weight    108.159 
_chem_comp.id                SGM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              MONOTHIOGLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 SGM sing 290 n n 
C1 S1 SGM sing 291 n n 
C1 H11 SGM sing 292 n n 
C1 H12 SGM sing 293 n n 
C2 O2 SGM sing 294 n n 
C2 C3 SGM sing 295 n n 
C2 H2 SGM sing 296 n n 
O2 HO2 SGM sing 297 n n 
C3 O3 SGM sing 298 n n 
C3 H31 SGM sing 299 n n 
C3 H32 SGM sing 300 n n 
O3 HO3 SGM sing 301 n n 
S1 HS1 SGM sing 302 n n 
#
_atom_sites.entry_id                     1OGU 
_atom_sites.fract_transf_matrix[1][1]    0.013543 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007481 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006741 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 ST8 A 1 1298 1298 ST8 ST8 . 
F 4 SGM B 1 1193 1193 SGM SGM . 
G 3 ST8 C 1 1297 1297 ST8 ST8 . 
H 4 SGM D 1 1193 1193 SGM SGM . 
I 5 HOH A 1 2001 2001 HOH HOH . 
I 5 HOH A 2 2002 2002 HOH HOH . 
I 5 HOH A 3 2003 2003 HOH HOH . 
I 5 HOH A 4 2004 2004 HOH HOH . 
I 5 HOH A 5 2005 2005 HOH HOH . 
I 5 HOH A 6 2006 2006 HOH HOH . 
I 5 HOH A 7 2007 2007 HOH HOH . 
I 5 HOH A 8 2008 2008 HOH HOH . 
I 5 HOH A 9 2009 2009 HOH HOH . 
I 5 HOH A 10 2010 2010 HOH HOH . 
I 5 HOH A 11 2011 2011 HOH HOH . 
I 5 HOH A 12 2012 2012 HOH HOH . 
I 5 HOH A 13 2013 2013 HOH HOH . 
I 5 HOH A 14 2014 2014 HOH HOH . 
I 5 HOH A 15 2015 2015 HOH HOH . 
I 5 HOH A 16 2016 2016 HOH HOH . 
I 5 HOH A 17 2017 2017 HOH HOH . 
I 5 HOH A 18 2018 2018 HOH HOH . 
I 5 HOH A 19 2019 2019 HOH HOH . 
I 5 HOH A 20 2020 2020 HOH HOH . 
I 5 HOH A 21 2021 2021 HOH HOH . 
I 5 HOH A 22 2022 2022 HOH HOH . 
I 5 HOH A 23 2023 2023 HOH HOH . 
I 5 HOH A 24 2024 2024 HOH HOH . 
I 5 HOH A 25 2025 2025 HOH HOH . 
I 5 HOH A 26 2026 2026 HOH HOH . 
I 5 HOH A 27 2027 2027 HOH HOH . 
I 5 HOH A 28 2028 2028 HOH HOH . 
I 5 HOH A 29 2029 2029 HOH HOH . 
I 5 HOH A 30 2030 2030 HOH HOH . 
I 5 HOH A 31 2031 2031 HOH HOH . 
I 5 HOH A 32 2032 2032 HOH HOH . 
I 5 HOH A 33 2033 2033 HOH HOH . 
I 5 HOH A 34 2034 2034 HOH HOH . 
I 5 HOH A 35 2035 2035 HOH HOH . 
I 5 HOH A 36 2036 2036 HOH HOH . 
I 5 HOH A 37 2037 2037 HOH HOH . 
I 5 HOH A 38 2038 2038 HOH HOH . 
I 5 HOH A 39 2039 2039 HOH HOH . 
I 5 HOH A 40 2040 2040 HOH HOH . 
I 5 HOH A 41 2041 2041 HOH HOH . 
I 5 HOH A 42 2042 2042 HOH HOH . 
I 5 HOH A 43 2043 2043 HOH HOH . 
I 5 HOH A 44 2044 2044 HOH HOH . 
J 5 HOH B 1 2001 2001 HOH HOH . 
J 5 HOH B 2 2002 2002 HOH HOH . 
J 5 HOH B 3 2003 2003 HOH HOH . 
J 5 HOH B 4 2004 2004 HOH HOH . 
J 5 HOH B 5 2005 2005 HOH HOH . 
J 5 HOH B 6 2006 2006 HOH HOH . 
J 5 HOH B 7 2007 2007 HOH HOH . 
J 5 HOH B 8 2008 2008 HOH HOH . 
J 5 HOH B 9 2009 2009 HOH HOH . 
J 5 HOH B 10 2010 2010 HOH HOH . 
J 5 HOH B 11 2011 2011 HOH HOH . 
J 5 HOH B 12 2012 2012 HOH HOH . 
J 5 HOH B 13 2013 2013 HOH HOH . 
J 5 HOH B 14 2014 2014 HOH HOH . 
J 5 HOH B 15 2015 2015 HOH HOH . 
J 5 HOH B 16 2016 2016 HOH HOH . 
J 5 HOH B 17 2017 2017 HOH HOH . 
J 5 HOH B 18 2018 2018 HOH HOH . 
J 5 HOH B 19 2019 2019 HOH HOH . 
J 5 HOH B 20 2020 2020 HOH HOH . 
J 5 HOH B 21 2021 2021 HOH HOH . 
J 5 HOH B 22 2022 2022 HOH HOH . 
J 5 HOH B 23 2023 2023 HOH HOH . 
J 5 HOH B 24 2024 2024 HOH HOH . 
J 5 HOH B 25 2025 2025 HOH HOH . 
J 5 HOH B 26 2026 2026 HOH HOH . 
J 5 HOH B 27 2027 2027 HOH HOH . 
J 5 HOH B 28 2028 2028 HOH HOH . 
J 5 HOH B 29 2029 2029 HOH HOH . 
J 5 HOH B 30 2030 2030 HOH HOH . 
J 5 HOH B 31 2031 2031 HOH HOH . 
J 5 HOH B 32 2032 2032 HOH HOH . 
J 5 HOH B 33 2033 2033 HOH HOH . 
J 5 HOH B 34 2034 2034 HOH HOH . 
J 5 HOH B 35 2035 2035 HOH HOH . 
J 5 HOH B 36 2036 2036 HOH HOH . 
J 5 HOH B 37 2037 2037 HOH HOH . 
K 5 HOH C 1 2001 2001 HOH HOH . 
K 5 HOH C 2 2002 2002 HOH HOH . 
K 5 HOH C 3 2003 2003 HOH HOH . 
K 5 HOH C 4 2004 2004 HOH HOH . 
K 5 HOH C 5 2005 2005 HOH HOH . 
K 5 HOH C 6 2006 2006 HOH HOH . 
K 5 HOH C 7 2007 2007 HOH HOH . 
K 5 HOH C 8 2008 2008 HOH HOH . 
K 5 HOH C 9 2009 2009 HOH HOH . 
K 5 HOH C 10 2010 2010 HOH HOH . 
K 5 HOH C 11 2011 2011 HOH HOH . 
K 5 HOH C 12 2012 2012 HOH HOH . 
K 5 HOH C 13 2013 2013 HOH HOH . 
K 5 HOH C 14 2014 2014 HOH HOH . 
K 5 HOH C 15 2015 2015 HOH HOH . 
K 5 HOH C 16 2016 2016 HOH HOH . 
K 5 HOH C 17 2017 2017 HOH HOH . 
K 5 HOH C 18 2018 2018 HOH HOH . 
K 5 HOH C 19 2019 2019 HOH HOH . 
K 5 HOH C 20 2020 2020 HOH HOH . 
K 5 HOH C 21 2021 2021 HOH HOH . 
K 5 HOH C 22 2022 2022 HOH HOH . 
K 5 HOH C 23 2023 2023 HOH HOH . 
K 5 HOH C 24 2024 2024 HOH HOH . 
K 5 HOH C 25 2025 2025 HOH HOH . 
L 5 HOH D 1 2001 2001 HOH HOH . 
L 5 HOH D 2 2002 2002 HOH HOH . 
L 5 HOH D 3 2003 2003 HOH HOH . 
L 5 HOH D 4 2004 2004 HOH HOH . 
L 5 HOH D 5 2005 2005 HOH HOH . 
L 5 HOH D 6 2006 2006 HOH HOH . 
L 5 HOH D 7 2007 2007 HOH HOH . 
L 5 HOH D 8 2008 2008 HOH HOH . 
L 5 HOH D 9 2009 2009 HOH HOH . 
L 5 HOH D 10 2010 2010 HOH HOH . 
L 5 HOH D 11 2011 2011 HOH HOH . 
L 5 HOH D 12 2012 2012 HOH HOH . 
L 5 HOH D 13 2013 2013 HOH HOH . 
L 5 HOH D 14 2014 2014 HOH HOH . 
L 5 HOH D 15 2015 2015 HOH HOH . 
L 5 HOH D 16 2016 2016 HOH HOH . 
L 5 HOH D 17 2017 2017 HOH HOH . 
L 5 HOH D 18 2018 2018 HOH HOH . 
L 5 HOH D 19 2019 2019 HOH HOH . 
L 5 HOH D 20 2020 2020 HOH HOH . 
L 5 HOH D 21 2021 2021 HOH HOH . 
L 5 HOH D 22 2022 2022 HOH HOH . 
L 5 HOH D 23 2023 2023 HOH HOH . 
L 5 HOH D 24 2024 2024 HOH HOH . 
L 5 HOH D 25 2025 2025 HOH HOH . 
L 5 HOH D 26 2026 2026 HOH HOH . 
L 5 HOH D 27 2027 2027 HOH HOH . 
L 5 HOH D 28 2028 2028 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 SGM . . . H 4 37.278 57.441 49.402 1 46.31 ? C1 SGM 1193 D 1 
HETATM 2 C C2 SGM . . . H 4 37.668 58.191 50.661 1 48.53 ? C2 SGM 1193 D 1 
HETATM 3 O O2 SGM . . . H 4 36.528 58.092 51.514 1 48.99 ? O2 SGM 1193 D 1 
HETATM 4 C C3 SGM . . . H 4 37.992 59.662 50.364 1 48.37 ? C3 SGM 1193 D 1 
HETATM 5 O O3 SGM . . . H 4 37.293 60.474 51.327 1 47.27 ? O3 SGM 1193 D 1 
HETATM 6 S S1 SGM . . . H 4 38.618 57.567 48.295 1 45.94 ? S1 SGM 1193 D 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    16 
_model_server_stats.query_time_ms           292 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           6 
#