data_1OGU # _model_server_result.job_id Y-nbqpDp76OoVwFgRI_o1g _model_server_result.datetime_utc '2024-11-12 21:18:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ogu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":1297}' # _entry.id 1OGU # _exptl.entry_id 1OGU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 370.406 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-{[4-AMINO-6-(CYCLOHEXYLMETHOXY)-5-NITROSOPYRIMIDIN-2-YL]AMINO}BENZAMIDE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1OGU _cell.length_a 73.836 _cell.length_b 133.676 _cell.length_c 148.335 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1OGU _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS dimeric 2 author_and_software_defined_assembly 1 PQS dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,I,J 1 1 C,D,G,H,K,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C TYR 163 A TYR 159 1_555 A N TPO 164 A TPO 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.344 ? covale ? covale2 A C TPO 164 A TPO 160 1_555 A N HIS 165 A HIS 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.36 ? covale ? covale3 B SG CYS 21 B CYS 193 1_555 F S1 SGM . B SGM 1193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? covale ? covale4 C C TYR 163 C TYR 159 1_555 C N TPO 164 C TPO 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale5 C C TPO 164 C TPO 160 1_555 C N HIS 165 C HIS 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.353 ? covale ? covale6 D SG CYS 21 D CYS 193 1_555 H S1 SGM . D SGM 1193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? # _chem_comp.formula 'C18 H22 N6 O3' _chem_comp.formula_weight 370.406 _chem_comp.id ST8 _chem_comp.mon_nstd_flag . _chem_comp.name 4-{[4-AMINO-6-(CYCLOHEXYLMETHOXY)-5-NITROSOPYRIMIDIN-2-YL]AMINO}BENZAMIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 N3 ST8 doub 303 n y C2 N1 ST8 sing 304 n y C2 N2 ST8 sing 305 n n C10 C11 ST8 sing 306 n n C10 O6 ST8 sing 307 n n C10 H101 ST8 sing 308 n n C10 H102 ST8 sing 309 n n C11 C12 ST8 sing 310 n n C11 C16 ST8 sing 311 n n C11 H11 ST8 sing 312 n n C12 C13 ST8 sing 313 n n C12 H121 ST8 sing 314 n n C12 H122 ST8 sing 315 n n C13 C14 ST8 sing 316 n n C13 H131 ST8 sing 317 n n C13 H132 ST8 sing 318 n n C14 C15 ST8 sing 319 n n C14 H141 ST8 sing 320 n n C14 H142 ST8 sing 321 n n C15 C16 ST8 sing 322 n n C15 H151 ST8 sing 323 n n C15 H152 ST8 sing 324 n n C16 H161 ST8 sing 325 n n C16 H162 ST8 sing 326 n n C19 C20 ST8 doub 327 n y C19 C18 ST8 sing 328 n y C19 H19 ST8 sing 329 n n C20 C21 ST8 sing 330 n y C20 C23 ST8 sing 331 n n C21 C22 ST8 doub 332 n y C21 H21 ST8 sing 333 n n C22 C17 ST8 sing 334 n y C22 H22 ST8 sing 335 n n N25 C23 ST8 sing 336 n n N25 H251 ST8 sing 337 n n N25 H252 ST8 sing 338 n n N3 C4 ST8 sing 339 n y C4 O6 ST8 sing 340 n n C4 C5 ST8 doub 341 n y C5 N7 ST8 sing 342 n n C5 C6 ST8 sing 343 n y N7 O8 ST8 doub 344 n n N9 C6 ST8 sing 345 n n N9 H9N1 ST8 sing 346 n n N9 H9N2 ST8 sing 347 n n C6 N1 ST8 doub 348 n y N2 C17 ST8 sing 349 n n N2 H2 ST8 sing 350 n n C17 C18 ST8 doub 351 n y C18 H18 ST8 sing 352 n n C23 O24 ST8 doub 353 n n # _atom_sites.entry_id 1OGU _atom_sites.fract_transf_matrix[1][1] 0.013543 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007481 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006741 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 ST8 A 1 1298 1298 ST8 ST8 . F 4 SGM B 1 1193 1193 SGM SGM . G 3 ST8 C 1 1297 1297 ST8 ST8 . H 4 SGM D 1 1193 1193 SGM SGM . I 5 HOH A 1 2001 2001 HOH HOH . I 5 HOH A 2 2002 2002 HOH HOH . I 5 HOH A 3 2003 2003 HOH HOH . I 5 HOH A 4 2004 2004 HOH HOH . I 5 HOH A 5 2005 2005 HOH HOH . I 5 HOH A 6 2006 2006 HOH HOH . I 5 HOH A 7 2007 2007 HOH HOH . I 5 HOH A 8 2008 2008 HOH HOH . I 5 HOH A 9 2009 2009 HOH HOH . I 5 HOH A 10 2010 2010 HOH HOH . I 5 HOH A 11 2011 2011 HOH HOH . I 5 HOH A 12 2012 2012 HOH HOH . I 5 HOH A 13 2013 2013 HOH HOH . I 5 HOH A 14 2014 2014 HOH HOH . I 5 HOH A 15 2015 2015 HOH HOH . I 5 HOH A 16 2016 2016 HOH HOH . I 5 HOH A 17 2017 2017 HOH HOH . I 5 HOH A 18 2018 2018 HOH HOH . I 5 HOH A 19 2019 2019 HOH HOH . I 5 HOH A 20 2020 2020 HOH HOH . I 5 HOH A 21 2021 2021 HOH HOH . I 5 HOH A 22 2022 2022 HOH HOH . I 5 HOH A 23 2023 2023 HOH HOH . I 5 HOH A 24 2024 2024 HOH HOH . I 5 HOH A 25 2025 2025 HOH HOH . I 5 HOH A 26 2026 2026 HOH HOH . I 5 HOH A 27 2027 2027 HOH HOH . I 5 HOH A 28 2028 2028 HOH HOH . I 5 HOH A 29 2029 2029 HOH HOH . I 5 HOH A 30 2030 2030 HOH HOH . I 5 HOH A 31 2031 2031 HOH HOH . I 5 HOH A 32 2032 2032 HOH HOH . I 5 HOH A 33 2033 2033 HOH HOH . I 5 HOH A 34 2034 2034 HOH HOH . I 5 HOH A 35 2035 2035 HOH HOH . I 5 HOH A 36 2036 2036 HOH HOH . I 5 HOH A 37 2037 2037 HOH HOH . I 5 HOH A 38 2038 2038 HOH HOH . I 5 HOH A 39 2039 2039 HOH HOH . I 5 HOH A 40 2040 2040 HOH HOH . I 5 HOH A 41 2041 2041 HOH HOH . I 5 HOH A 42 2042 2042 HOH HOH . I 5 HOH A 43 2043 2043 HOH HOH . I 5 HOH A 44 2044 2044 HOH HOH . J 5 HOH B 1 2001 2001 HOH HOH . J 5 HOH B 2 2002 2002 HOH HOH . J 5 HOH B 3 2003 2003 HOH HOH . J 5 HOH B 4 2004 2004 HOH HOH . J 5 HOH B 5 2005 2005 HOH HOH . J 5 HOH B 6 2006 2006 HOH HOH . J 5 HOH B 7 2007 2007 HOH HOH . J 5 HOH B 8 2008 2008 HOH HOH . J 5 HOH B 9 2009 2009 HOH HOH . J 5 HOH B 10 2010 2010 HOH HOH . J 5 HOH B 11 2011 2011 HOH HOH . J 5 HOH B 12 2012 2012 HOH HOH . J 5 HOH B 13 2013 2013 HOH HOH . J 5 HOH B 14 2014 2014 HOH HOH . J 5 HOH B 15 2015 2015 HOH HOH . J 5 HOH B 16 2016 2016 HOH HOH . J 5 HOH B 17 2017 2017 HOH HOH . J 5 HOH B 18 2018 2018 HOH HOH . J 5 HOH B 19 2019 2019 HOH HOH . J 5 HOH B 20 2020 2020 HOH HOH . J 5 HOH B 21 2021 2021 HOH HOH . J 5 HOH B 22 2022 2022 HOH HOH . J 5 HOH B 23 2023 2023 HOH HOH . J 5 HOH B 24 2024 2024 HOH HOH . J 5 HOH B 25 2025 2025 HOH HOH . J 5 HOH B 26 2026 2026 HOH HOH . J 5 HOH B 27 2027 2027 HOH HOH . J 5 HOH B 28 2028 2028 HOH HOH . J 5 HOH B 29 2029 2029 HOH HOH . J 5 HOH B 30 2030 2030 HOH HOH . J 5 HOH B 31 2031 2031 HOH HOH . J 5 HOH B 32 2032 2032 HOH HOH . J 5 HOH B 33 2033 2033 HOH HOH . J 5 HOH B 34 2034 2034 HOH HOH . J 5 HOH B 35 2035 2035 HOH HOH . J 5 HOH B 36 2036 2036 HOH HOH . J 5 HOH B 37 2037 2037 HOH HOH . K 5 HOH C 1 2001 2001 HOH HOH . K 5 HOH C 2 2002 2002 HOH HOH . K 5 HOH C 3 2003 2003 HOH HOH . K 5 HOH C 4 2004 2004 HOH HOH . K 5 HOH C 5 2005 2005 HOH HOH . K 5 HOH C 6 2006 2006 HOH HOH . K 5 HOH C 7 2007 2007 HOH HOH . K 5 HOH C 8 2008 2008 HOH HOH . K 5 HOH C 9 2009 2009 HOH HOH . K 5 HOH C 10 2010 2010 HOH HOH . K 5 HOH C 11 2011 2011 HOH HOH . K 5 HOH C 12 2012 2012 HOH HOH . K 5 HOH C 13 2013 2013 HOH HOH . K 5 HOH C 14 2014 2014 HOH HOH . K 5 HOH C 15 2015 2015 HOH HOH . K 5 HOH C 16 2016 2016 HOH HOH . K 5 HOH C 17 2017 2017 HOH HOH . K 5 HOH C 18 2018 2018 HOH HOH . K 5 HOH C 19 2019 2019 HOH HOH . K 5 HOH C 20 2020 2020 HOH HOH . K 5 HOH C 21 2021 2021 HOH HOH . K 5 HOH C 22 2022 2022 HOH HOH . K 5 HOH C 23 2023 2023 HOH HOH . K 5 HOH C 24 2024 2024 HOH HOH . K 5 HOH C 25 2025 2025 HOH HOH . L 5 HOH D 1 2001 2001 HOH HOH . L 5 HOH D 2 2002 2002 HOH HOH . L 5 HOH D 3 2003 2003 HOH HOH . L 5 HOH D 4 2004 2004 HOH HOH . L 5 HOH D 5 2005 2005 HOH HOH . L 5 HOH D 6 2006 2006 HOH HOH . L 5 HOH D 7 2007 2007 HOH HOH . L 5 HOH D 8 2008 2008 HOH HOH . L 5 HOH D 9 2009 2009 HOH HOH . L 5 HOH D 10 2010 2010 HOH HOH . L 5 HOH D 11 2011 2011 HOH HOH . L 5 HOH D 12 2012 2012 HOH HOH . L 5 HOH D 13 2013 2013 HOH HOH . L 5 HOH D 14 2014 2014 HOH HOH . L 5 HOH D 15 2015 2015 HOH HOH . L 5 HOH D 16 2016 2016 HOH HOH . L 5 HOH D 17 2017 2017 HOH HOH . L 5 HOH D 18 2018 2018 HOH HOH . L 5 HOH D 19 2019 2019 HOH HOH . L 5 HOH D 20 2020 2020 HOH HOH . L 5 HOH D 21 2021 2021 HOH HOH . L 5 HOH D 22 2022 2022 HOH HOH . L 5 HOH D 23 2023 2023 HOH HOH . L 5 HOH D 24 2024 2024 HOH HOH . L 5 HOH D 25 2025 2025 HOH HOH . L 5 HOH D 26 2026 2026 HOH HOH . L 5 HOH D 27 2027 2027 HOH HOH . L 5 HOH D 28 2028 2028 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 ST8 . . . G 3 33.145 84.704 45.425 1 27.72 ? C2 ST8 1297 C 1 HETATM 2 C C10 ST8 . . . G 3 33.893 84.134 41.431 1 35.66 ? C10 ST8 1297 C 1 HETATM 3 C C11 ST8 . . . G 3 34.481 83.643 40.139 1 38.24 ? C11 ST8 1297 C 1 HETATM 4 C C12 ST8 . . . G 3 35.99 83.474 40.241 1 37.59 ? C12 ST8 1297 C 1 HETATM 5 C C13 ST8 . . . G 3 36.435 82.874 38.921 1 40.63 ? C13 ST8 1297 C 1 HETATM 6 C C14 ST8 . . . G 3 35.912 83.656 37.706 1 39.92 ? C14 ST8 1297 C 1 HETATM 7 C C15 ST8 . . . G 3 34.427 83.993 37.799 1 39.72 ? C15 ST8 1297 C 1 HETATM 8 C C16 ST8 . . . G 3 34.18 84.703 39.106 1 38.9 ? C16 ST8 1297 C 1 HETATM 9 C C19 ST8 . . . G 3 32.662 89.342 44.554 1 28.37 ? C19 ST8 1297 C 1 HETATM 10 C C20 ST8 . . . G 3 33.546 89.295 43.471 1 32.28 ? C20 ST8 1297 C 1 HETATM 11 C C21 ST8 . . . G 3 34.243 88.125 43.186 1 30.55 ? C21 ST8 1297 C 1 HETATM 12 C C22 ST8 . . . G 3 34.058 87.012 44.001 1 30.9 ? C22 ST8 1297 C 1 HETATM 13 N N25 ST8 . . . G 3 34.891 90.715 41.805 1 37.68 ? N25 ST8 1297 C 1 HETATM 14 N N3 ST8 . . . G 3 33.343 84.491 44.099 1 28.7 ? N3 ST8 1297 C 1 HETATM 15 C C4 ST8 . . . G 3 33.589 83.262 43.581 1 29.29 ? C4 ST8 1297 C 1 HETATM 16 O O6 ST8 . . . G 3 33.565 83.023 42.241 1 30.79 ? O6 ST8 1297 C 1 HETATM 17 C C5 ST8 . . . G 3 33.619 82.134 44.499 1 27.69 ? C5 ST8 1297 C 1 HETATM 18 N N7 ST8 . . . G 3 33.869 80.876 43.993 1 30.67 ? N7 ST8 1297 C 1 HETATM 19 N N9 ST8 . . . G 3 33.412 81.404 46.83 1 28.23 ? N9 ST8 1297 C 1 HETATM 20 C C6 ST8 . . . G 3 33.383 82.403 45.92 1 26.69 ? C6 ST8 1297 C 1 HETATM 21 N N1 ST8 . . . G 3 33.17 83.671 46.305 1 26.25 ? N1 ST8 1297 C 1 HETATM 22 N N2 ST8 . . . G 3 32.931 85.97 45.881 1 27.83 ? N2 ST8 1297 C 1 HETATM 23 C C17 ST8 . . . G 3 33.154 87.057 45.09 1 30.28 ? C17 ST8 1297 C 1 HETATM 24 C C18 ST8 . . . G 3 32.448 88.235 45.345 1 28.51 ? C18 ST8 1297 C 1 HETATM 25 C C23 ST8 . . . G 3 33.723 90.535 42.607 1 35.23 ? C23 ST8 1297 C 1 HETATM 26 O O8 ST8 . . . G 3 33.917 79.922 44.748 1 32.66 ? O8 ST8 1297 C 1 HETATM 27 O O24 ST8 . . . G 3 32.841 91.391 42.59 1 35.32 ? O24 ST8 1297 C 1 # _model_server_stats.io_time_ms 73 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 329 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 27 #