data_1OHH # _model_server_result.job_id VBbAOUtFCRQHVhIuPggFYg _model_server_result.datetime_utc '2024-11-24 13:55:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ohh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Q","auth_seq_id":1478}' # _entry.id 1OHH # _exptl.entry_id 1OHH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1OHH _cell.length_a 272.3 _cell.length_b 107.2 _cell.length_c 152.4 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1OHH _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 I N N ? 5 K N N ? 5 M N N ? 5 O N N ? 5 Q N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 176 A THR 176 1_555 J MG MG . A MG 1512 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.143 ? metalc ? metalc2 I O2B ANP . A ANP 1511 1_555 J MG MG . A MG 1512 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? metalc ? metalc3 I O2G ANP . A ANP 1511 1_555 J MG MG . A MG 1512 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? metalc ? metalc4 B OG1 THR 176 B THR 176 1_555 L MG MG . B MG 1512 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? metalc ? metalc5 K O2G ANP . B ANP 1511 1_555 L MG MG . B MG 1512 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? metalc ? metalc6 K O2B ANP . B ANP 1511 1_555 L MG MG . B MG 1512 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? metalc ? metalc7 C OG1 THR 176 C THR 176 1_555 N MG MG . C MG 1512 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc8 M O2G ANP . C ANP 1511 1_555 N MG MG . C MG 1512 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? metalc ? metalc9 M O2B ANP . C ANP 1511 1_555 N MG MG . C MG 1512 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? metalc ? metalc10 D OG1 THR 167 D THR 163 1_555 P MG MG . D MG 1479 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? metalc ? metalc11 D OE1 GLU 192 D GLU 188 1_555 P MG MG . D MG 1479 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.112 ? metalc ? metalc12 O O2G ANP . D ANP 1478 1_555 P MG MG . D MG 1479 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? metalc ? metalc13 O O2B ANP . D ANP 1478 1_555 P MG MG . D MG 1479 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.2 ? metalc ? metalc14 F OG1 THR 167 F THR 163 1_555 R MG MG . F MG 1479 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? metalc ? metalc15 F OE1 GLU 192 F GLU 188 1_555 R MG MG . F MG 1479 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.793 ? metalc ? metalc16 Q O2B ANP . F ANP 1478 1_555 R MG MG . F MG 1479 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? metalc ? metalc17 Q O2G ANP . F ANP 1478 1_555 R MG MG . F MG 1479 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 1OHH _atom_sites.fract_transf_matrix[1][1] 0.003672 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009328 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006562 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 5 ANP A 1 1511 1511 ANP ANP . J 6 MG A 1 1512 1512 MG MG . K 5 ANP B 1 1511 1511 ANP ANP . L 6 MG B 1 1512 1512 MG MG . M 5 ANP C 1 1511 1511 ANP ANP . N 6 MG C 1 1512 1512 MG MG . O 5 ANP D 1 1478 1478 ANP ANP . P 6 MG D 1 1479 1479 MG MG . Q 5 ANP F 1 1478 1478 ANP ANP . R 6 MG F 1 1479 1479 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . Q 5 108.263 28.119 32.054 0.5 45.79 ? PG ANP 1478 F 1 HETATM 2 O O1G ANP . . . Q 5 108.6 27.12 30.978 0.5 50.67 ? O1G ANP 1478 F 1 HETATM 3 O O2G ANP . . . Q 5 109.199 27.98 33.154 0.5 50.66 ? O2G ANP 1478 F 1 HETATM 4 O O3G ANP . . . Q 5 108.279 29.503 31.444 0.5 49.67 ? O3G ANP 1478 F 1 HETATM 5 P PB ANP . . . Q 5 106.197 27.173 33.847 0.5 46.08 ? PB ANP 1478 F 1 HETATM 6 O O1B ANP . . . Q 5 105.724 25.842 33.583 0.5 57.81 ? O1B ANP 1478 F 1 HETATM 7 O O2B ANP . . . Q 5 107.248 27.113 34.902 0.5 51.82 ? O2B ANP 1478 F 1 HETATM 8 N N3B ANP . . . Q 5 106.781 27.76 32.435 0.5 50.68 ? N3B ANP 1478 F 1 HETATM 9 P PA ANP . . . Q 5 104.749 28.97 35.538 0.5 46.42 ? PA ANP 1478 F 1 HETATM 10 O O1A ANP . . . Q 5 104.641 28.285 36.831 0.5 33.99 ? O1A ANP 1478 F 1 HETATM 11 O O2A ANP . . . Q 5 105.925 29.889 35.61 0.5 54.19 ? O2A ANP 1478 F 1 HETATM 12 O O3A ANP . . . Q 5 104.962 28.036 34.275 0.5 41.71 ? O3A ANP 1478 F 1 HETATM 13 O O5' ANP . . . Q 5 103.459 29.69 35.02 0.5 39.88 ? O5' ANP 1478 F 1 HETATM 14 C C5' ANP . . . Q 5 103.392 31.071 34.684 0.5 48.27 ? C5' ANP 1478 F 1 HETATM 15 C C4' ANP . . . Q 5 102.037 31.646 34.65 0.5 53.92 ? C4' ANP 1478 F 1 HETATM 16 O O4' ANP . . . Q 5 100.921 30.779 34.296 0.5 55.27 ? O4' ANP 1478 F 1 HETATM 17 C C3' ANP . . . Q 5 101.687 32.33 35.949 0.5 54.86 ? C3' ANP 1478 F 1 HETATM 18 O O3' ANP . . . Q 5 102.086 33.655 35.895 0.5 60.07 ? O3' ANP 1478 F 1 HETATM 19 C C2' ANP . . . Q 5 100.217 32.259 36.001 0.5 56.28 ? C2' ANP 1478 F 1 HETATM 20 O O2' ANP . . . Q 5 99.608 33.359 35.408 0.5 58.68 ? O2' ANP 1478 F 1 HETATM 21 C C1' ANP . . . Q 5 99.883 30.957 35.251 0.5 52.79 ? C1' ANP 1478 F 1 HETATM 22 N N9 ANP . . . Q 5 99.696 29.815 36.14 0.5 51.31 ? N9 ANP 1478 F 1 HETATM 23 C C8 ANP . . . Q 5 100.36 28.638 36.21 0.5 55.77 ? C8 ANP 1478 F 1 HETATM 24 N N7 ANP . . . Q 5 99.917 27.822 37.169 0.5 58.77 ? N7 ANP 1478 F 1 HETATM 25 C C5 ANP . . . Q 5 98.9 28.537 37.739 0.5 54.47 ? C5 ANP 1478 F 1 HETATM 26 C C6 ANP . . . Q 5 98.034 28.24 38.805 0.5 54.2 ? C6 ANP 1478 F 1 HETATM 27 N N6 ANP . . . Q 5 98.099 27.096 39.476 0.5 48.25 ? N6 ANP 1478 F 1 HETATM 28 N N1 ANP . . . Q 5 97.081 29.187 39.156 0.5 55.17 ? N1 ANP 1478 F 1 HETATM 29 C C2 ANP . . . Q 5 97.029 30.364 38.449 0.5 59.4 ? C2 ANP 1478 F 1 HETATM 30 N N3 ANP . . . Q 5 97.799 30.733 37.442 0.5 61.28 ? N3 ANP 1478 F 1 HETATM 31 C C4 ANP . . . Q 5 98.73 29.766 37.127 0.5 54.15 ? C4 ANP 1478 F 1 # _model_server_stats.io_time_ms 28 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 44 _model_server_stats.query_time_ms 450 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #