data_1OHH # _model_server_result.job_id Xw8KMBYOlemFCm_rAJNglA _model_server_result.datetime_utc '2024-11-24 13:51:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ohh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":1511}' # _entry.id 1OHH # _exptl.entry_id 1OHH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1OHH _cell.length_a 272.3 _cell.length_b 107.2 _cell.length_c 152.4 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1OHH _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 I N N ? 5 K N N ? 5 M N N ? 5 O N N ? 5 Q N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 176 A THR 176 1_555 J MG MG . A MG 1512 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.143 ? metalc ? metalc2 I O2B ANP . A ANP 1511 1_555 J MG MG . A MG 1512 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? metalc ? metalc3 I O2G ANP . A ANP 1511 1_555 J MG MG . A MG 1512 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? metalc ? metalc4 B OG1 THR 176 B THR 176 1_555 L MG MG . B MG 1512 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? metalc ? metalc5 K O2G ANP . B ANP 1511 1_555 L MG MG . B MG 1512 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? metalc ? metalc6 K O2B ANP . B ANP 1511 1_555 L MG MG . B MG 1512 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? metalc ? metalc7 C OG1 THR 176 C THR 176 1_555 N MG MG . C MG 1512 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc8 M O2G ANP . C ANP 1511 1_555 N MG MG . C MG 1512 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? metalc ? metalc9 M O2B ANP . C ANP 1511 1_555 N MG MG . C MG 1512 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? metalc ? metalc10 D OG1 THR 167 D THR 163 1_555 P MG MG . D MG 1479 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? metalc ? metalc11 D OE1 GLU 192 D GLU 188 1_555 P MG MG . D MG 1479 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.112 ? metalc ? metalc12 O O2G ANP . D ANP 1478 1_555 P MG MG . D MG 1479 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? metalc ? metalc13 O O2B ANP . D ANP 1478 1_555 P MG MG . D MG 1479 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.2 ? metalc ? metalc14 F OG1 THR 167 F THR 163 1_555 R MG MG . F MG 1479 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? metalc ? metalc15 F OE1 GLU 192 F GLU 188 1_555 R MG MG . F MG 1479 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.793 ? metalc ? metalc16 Q O2B ANP . F ANP 1478 1_555 R MG MG . F MG 1479 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? metalc ? metalc17 Q O2G ANP . F ANP 1478 1_555 R MG MG . F MG 1479 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 1OHH _atom_sites.fract_transf_matrix[1][1] 0.003672 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009328 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006562 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 5 ANP A 1 1511 1511 ANP ANP . J 6 MG A 1 1512 1512 MG MG . K 5 ANP B 1 1511 1511 ANP ANP . L 6 MG B 1 1512 1512 MG MG . M 5 ANP C 1 1511 1511 ANP ANP . N 6 MG C 1 1512 1512 MG MG . O 5 ANP D 1 1478 1478 ANP ANP . P 6 MG D 1 1479 1479 MG MG . Q 5 ANP F 1 1478 1478 ANP ANP . R 6 MG F 1 1479 1479 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . K 5 106.73 46.278 13.158 0.5 51.94 ? PG ANP 1511 B 1 HETATM 2 O O1G ANP . . . K 5 107.021 44.86 12.76 0.5 47.14 ? O1G ANP 1511 B 1 HETATM 3 O O2G ANP . . . K 5 107.832 46.848 13.931 0.5 54.96 ? O2G ANP 1511 B 1 HETATM 4 O O3G ANP . . . K 5 106.443 47.1 11.924 0.5 55.34 ? O3G ANP 1511 B 1 HETATM 5 P PB ANP . . . K 5 105.098 46.561 15.595 0.5 55.24 ? PB ANP 1511 B 1 HETATM 6 O O1B ANP . . . K 5 104.415 45.463 16.287 0.5 63.12 ? O1B ANP 1511 B 1 HETATM 7 O O2B ANP . . . K 5 106.398 46.843 16.272 0.5 53.65 ? O2B ANP 1511 B 1 HETATM 8 N N3B ANP . . . K 5 105.36 46.174 14.009 0.5 41.97 ? N3B ANP 1511 B 1 HETATM 9 P PA ANP . . . K 5 104.522 49.365 15.459 0.5 60.12 ? PA ANP 1511 B 1 HETATM 10 O O1A ANP . . . K 5 104.9 50.089 16.676 0.5 60.09 ? O1A ANP 1511 B 1 HETATM 11 O O2A ANP . . . K 5 105.637 49.408 14.445 0.5 54.47 ? O2A ANP 1511 B 1 HETATM 12 O O3A ANP . . . K 5 104.131 47.842 15.638 0.5 53 ? O3A ANP 1511 B 1 HETATM 13 O O5' ANP . . . K 5 103.18 49.899 14.882 0.5 64.85 ? O5' ANP 1511 B 1 HETATM 14 C C5' ANP . . . K 5 103.086 50.427 13.578 0.5 67.65 ? C5' ANP 1511 B 1 HETATM 15 C C4' ANP . . . K 5 101.884 51.248 13.374 0.5 70.77 ? C4' ANP 1511 B 1 HETATM 16 O O4' ANP . . . K 5 100.718 50.983 14.227 0.5 68.45 ? O4' ANP 1511 B 1 HETATM 17 C C3' ANP . . . K 5 102.207 52.704 13.494 0.5 71.72 ? C3' ANP 1511 B 1 HETATM 18 O O3' ANP . . . K 5 102.43 53.225 12.21 0.5 80.45 ? O3' ANP 1511 B 1 HETATM 19 C C2' ANP . . . K 5 101.027 53.355 14.185 0.5 72.98 ? C2' ANP 1511 B 1 HETATM 20 O O2' ANP . . . K 5 100.189 54.095 13.336 0.5 80.17 ? O2' ANP 1511 B 1 HETATM 21 C C1' ANP . . . K 5 100.227 52.18 14.796 0.5 71.27 ? C1' ANP 1511 B 1 HETATM 22 N N9 ANP . . . K 5 100.182 52.193 16.25 0.5 72.89 ? N9 ANP 1511 B 1 HETATM 23 C C8 ANP . . . K 5 101.039 51.642 17.127 0.5 76.83 ? C8 ANP 1511 B 1 HETATM 24 N N7 ANP . . . K 5 100.699 51.85 18.408 0.5 79.02 ? N7 ANP 1511 B 1 HETATM 25 C C5 ANP . . . K 5 99.545 52.589 18.325 0.5 77.8 ? C5 ANP 1511 B 1 HETATM 26 C C6 ANP . . . K 5 98.686 53.125 19.328 0.5 79.19 ? C6 ANP 1511 B 1 HETATM 27 N N6 ANP . . . K 5 98.921 52.978 20.636 0.5 81.02 ? N6 ANP 1511 B 1 HETATM 28 N N1 ANP . . . K 5 97.563 53.841 18.908 0.5 79.03 ? N1 ANP 1511 B 1 HETATM 29 C C2 ANP . . . K 5 97.326 53.989 17.562 0.5 76.02 ? C2 ANP 1511 B 1 HETATM 30 N N3 ANP . . . K 5 98.065 53.527 16.563 0.5 77.68 ? N3 ANP 1511 B 1 HETATM 31 C C4 ANP . . . K 5 99.18 52.815 17.01 0.5 77.31 ? C4 ANP 1511 B 1 # _model_server_stats.io_time_ms 92 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 51 _model_server_stats.query_time_ms 662 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 31 #