data_1OIW # _model_server_result.job_id QQxmaIQdFBrPfsq9u4gQaw _model_server_result.datetime_utc '2024-11-25 21:23:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1oiw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1174}' # _entry.id 1OIW # _exptl.entry_id 1OIW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 539.246 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "5'-GUANOSINE-DIPHOSPHATE-MONOTHIOPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1OIW _cell.length_a 73.726 _cell.length_b 73.726 _cell.length_c 125.152 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1OIW _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 43 A SER 25 1_555 C MG MG . A MG 1175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.136 ? metalc ? metalc2 A OG1 THR 61 A THR 43 1_555 C MG MG . A MG 1175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? metalc ? metalc3 B O2G GSP . A GSP 1174 1_555 C MG MG . A MG 1175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? metalc ? metalc4 B O2B GSP . A GSP 1174 1_555 C MG MG . A MG 1175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? metalc ? metalc5 C MG MG . A MG 1175 1_555 D O HOH . A HOH 2030 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? metalc ? metalc6 C MG MG . A MG 1175 1_555 D O HOH . A HOH 2077 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? # _chem_comp.formula 'C10 H16 N5 O13 P3 S' _chem_comp.formula_weight 539.246 _chem_comp.id GSP _chem_comp.mon_nstd_flag . _chem_comp.name "5'-GUANOSINE-DIPHOSPHATE-MONOTHIOPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O3B GSP sing 116 n n PG S1G GSP doub 117 n n PG O2G GSP sing 118 n n PG O3G GSP sing 119 n n O3B PB GSP sing 120 n n O2G HOG2 GSP sing 121 n n O3G HOG3 GSP sing 122 n n PB O1B GSP doub 123 n n PB O2B GSP sing 124 n n PB O3A GSP sing 125 n n O2B HOB2 GSP sing 126 n n PA O1A GSP doub 127 n n PA O2A GSP sing 128 n n PA O3A GSP sing 129 n n PA O5' GSP sing 130 n n O2A HOA2 GSP sing 131 n n O5' C5' GSP sing 132 n n C5' C4' GSP sing 133 n n C5' "H5'1" GSP sing 134 n n C5' "H5'2" GSP sing 135 n n C4' O4' GSP sing 136 n n C4' C3' GSP sing 137 n n C4' H4' GSP sing 138 n n O4' C1' GSP sing 139 n n C3' O3' GSP sing 140 n n C3' C2' GSP sing 141 n n C3' H3' GSP sing 142 n n O3' HO3' GSP sing 143 n n C2' O2' GSP sing 144 n n C2' C1' GSP sing 145 n n C2' H2' GSP sing 146 n n O2' HO2' GSP sing 147 n n C1' N9 GSP sing 148 n n C1' H1' GSP sing 149 n n N9 C8 GSP sing 150 n y N9 C4 GSP sing 151 n y C8 N7 GSP doub 152 n y C8 H8 GSP sing 153 n n N7 C5 GSP sing 154 n y C5 C6 GSP sing 155 n n C5 C4 GSP doub 156 n y C6 O6 GSP doub 157 n n C6 N1 GSP sing 158 n n N1 C2 GSP sing 159 n n N1 HN1 GSP sing 160 n n C2 N2 GSP sing 161 n n C2 N3 GSP doub 162 n n N2 HN21 GSP sing 163 n n N2 HN22 GSP sing 164 n n N3 C4 GSP sing 165 n n # _atom_sites.entry_id 1OIW _atom_sites.fract_transf_matrix[1][1] 0.013564 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013564 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00799 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GSP A 1 1174 1174 GSP GSP . C 3 MG A 1 1175 1175 MG MG . D 4 HOH A 1 2001 2001 HOH HOH . D 4 HOH A 2 2002 2002 HOH HOH . D 4 HOH A 3 2003 2003 HOH HOH . D 4 HOH A 4 2004 2004 HOH HOH . D 4 HOH A 5 2005 2005 HOH HOH . D 4 HOH A 6 2006 2006 HOH HOH . D 4 HOH A 7 2007 2007 HOH HOH . D 4 HOH A 8 2008 2008 HOH HOH . D 4 HOH A 9 2009 2009 HOH HOH . D 4 HOH A 10 2010 2010 HOH HOH . D 4 HOH A 11 2011 2011 HOH HOH . D 4 HOH A 12 2012 2012 HOH HOH . D 4 HOH A 13 2013 2013 HOH HOH . D 4 HOH A 14 2014 2014 HOH HOH . D 4 HOH A 15 2015 2015 HOH HOH . D 4 HOH A 16 2016 2016 HOH HOH . D 4 HOH A 17 2017 2017 HOH HOH . D 4 HOH A 18 2018 2018 HOH HOH . D 4 HOH A 19 2019 2019 HOH HOH . D 4 HOH A 20 2020 2020 HOH HOH . D 4 HOH A 21 2021 2021 HOH HOH . D 4 HOH A 22 2022 2022 HOH HOH . D 4 HOH A 23 2023 2023 HOH HOH . D 4 HOH A 24 2024 2024 HOH HOH . D 4 HOH A 25 2025 2025 HOH HOH . D 4 HOH A 26 2026 2026 HOH HOH . D 4 HOH A 27 2027 2027 HOH HOH . D 4 HOH A 28 2028 2028 HOH HOH . D 4 HOH A 29 2029 2029 HOH HOH . D 4 HOH A 30 2030 2030 HOH HOH . D 4 HOH A 31 2031 2031 HOH HOH . D 4 HOH A 32 2032 2032 HOH HOH . D 4 HOH A 33 2033 2033 HOH HOH . D 4 HOH A 34 2034 2034 HOH HOH . D 4 HOH A 35 2035 2035 HOH HOH . D 4 HOH A 36 2036 2036 HOH HOH . D 4 HOH A 37 2037 2037 HOH HOH . D 4 HOH A 38 2038 2038 HOH HOH . D 4 HOH A 39 2039 2039 HOH HOH . D 4 HOH A 40 2040 2040 HOH HOH . D 4 HOH A 41 2041 2041 HOH HOH . D 4 HOH A 42 2042 2042 HOH HOH . D 4 HOH A 43 2043 2043 HOH HOH . D 4 HOH A 44 2044 2044 HOH HOH . D 4 HOH A 45 2045 2045 HOH HOH . D 4 HOH A 46 2046 2046 HOH HOH . D 4 HOH A 47 2047 2047 HOH HOH . D 4 HOH A 48 2048 2048 HOH HOH . D 4 HOH A 49 2049 2049 HOH HOH . D 4 HOH A 50 2050 2050 HOH HOH . D 4 HOH A 51 2051 2051 HOH HOH . D 4 HOH A 52 2052 2052 HOH HOH . D 4 HOH A 53 2053 2053 HOH HOH . D 4 HOH A 54 2054 2054 HOH HOH . D 4 HOH A 55 2055 2055 HOH HOH . D 4 HOH A 56 2056 2056 HOH HOH . D 4 HOH A 57 2057 2057 HOH HOH . D 4 HOH A 58 2058 2058 HOH HOH . D 4 HOH A 59 2059 2059 HOH HOH . D 4 HOH A 60 2060 2060 HOH HOH . D 4 HOH A 61 2061 2061 HOH HOH . D 4 HOH A 62 2062 2062 HOH HOH . D 4 HOH A 63 2063 2063 HOH HOH . D 4 HOH A 64 2064 2064 HOH HOH . D 4 HOH A 65 2065 2065 HOH HOH . D 4 HOH A 66 2066 2066 HOH HOH . D 4 HOH A 67 2067 2067 HOH HOH . D 4 HOH A 68 2068 2068 HOH HOH . D 4 HOH A 69 2069 2069 HOH HOH . D 4 HOH A 70 2070 2070 HOH HOH . D 4 HOH A 71 2071 2071 HOH HOH . D 4 HOH A 72 2072 2072 HOH HOH . D 4 HOH A 73 2073 2073 HOH HOH . D 4 HOH A 74 2074 2074 HOH HOH . D 4 HOH A 75 2075 2075 HOH HOH . D 4 HOH A 76 2076 2076 HOH HOH . D 4 HOH A 77 2077 2077 HOH HOH . D 4 HOH A 78 2078 2078 HOH HOH . D 4 HOH A 79 2079 2079 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GSP . . . B 2 9.881 17.322 4.495 1 26.14 ? PG GSP 1174 A 1 HETATM 2 O O3B GSP . . . B 2 11.12 16.698 5.348 1 18.39 ? O3B GSP 1174 A 1 HETATM 3 S S1G GSP . . . B 2 10.299 17.05 3.044 1 20.7 ? S1G GSP 1174 A 1 HETATM 4 O O2G GSP . . . B 2 8.597 16.66 4.863 1 20.86 ? O2G GSP 1174 A 1 HETATM 5 O O3G GSP . . . B 2 9.857 18.757 4.731 1 16.66 ? O3G GSP 1174 A 1 HETATM 6 P PB GSP . . . B 2 11.488 16.575 6.904 1 24.85 ? PB GSP 1174 A 1 HETATM 7 O O1B GSP . . . B 2 12.087 17.887 7.411 1 16.4 ? O1B GSP 1174 A 1 HETATM 8 O O2B GSP . . . B 2 10.296 16.123 7.6 1 12.22 ? O2B GSP 1174 A 1 HETATM 9 P PA GSP . . . B 2 12.458 13.896 7.429 1 20.57 ? PA GSP 1174 A 1 HETATM 10 O O1A GSP . . . B 2 12.084 13.746 8.82 1 20.03 ? O1A GSP 1174 A 1 HETATM 11 O O2A GSP . . . B 2 11.57 13.215 6.39 1 20.32 ? O2A GSP 1174 A 1 HETATM 12 O O3A GSP . . . B 2 12.535 15.427 6.878 1 19.21 ? O3A GSP 1174 A 1 HETATM 13 O O5' GSP . . . B 2 14.044 13.43 7.311 1 20.16 ? O5' GSP 1174 A 1 HETATM 14 C C5' GSP . . . B 2 14.555 13.55 5.911 1 19.81 ? C5' GSP 1174 A 1 HETATM 15 C C4' GSP . . . B 2 15.76 12.492 6.035 1 20.71 ? C4' GSP 1174 A 1 HETATM 16 O O4' GSP . . . B 2 16.725 12.791 7.067 1 18.02 ? O4' GSP 1174 A 1 HETATM 17 C C3' GSP . . . B 2 15.371 11.097 6.259 1 22.84 ? C3' GSP 1174 A 1 HETATM 18 O O3' GSP . . . B 2 16.01 10.211 5.373 1 27.26 ? O3' GSP 1174 A 1 HETATM 19 C C2' GSP . . . B 2 15.614 10.741 7.754 1 22.74 ? C2' GSP 1174 A 1 HETATM 20 O O2' GSP . . . B 2 15.814 9.463 7.973 1 23.51 ? O2' GSP 1174 A 1 HETATM 21 C C1' GSP . . . B 2 16.985 11.695 7.939 1 18.98 ? C1' GSP 1174 A 1 HETATM 22 N N9 GSP . . . B 2 17.074 12.21 9.367 1 20.63 ? N9 GSP 1174 A 1 HETATM 23 C C8 GSP . . . B 2 16.024 12.822 10.055 1 20.42 ? C8 GSP 1174 A 1 HETATM 24 N N7 GSP . . . B 2 16.667 13.056 11.225 1 19.78 ? N7 GSP 1174 A 1 HETATM 25 C C5 GSP . . . B 2 17.996 12.634 11.281 1 21.45 ? C5 GSP 1174 A 1 HETATM 26 C C6 GSP . . . B 2 18.844 12.73 12.246 1 22.31 ? C6 GSP 1174 A 1 HETATM 27 O O6 GSP . . . B 2 18.9 13.168 13.442 1 24.01 ? O6 GSP 1174 A 1 HETATM 28 N N1 GSP . . . B 2 20.211 12.122 11.848 1 23.25 ? N1 GSP 1174 A 1 HETATM 29 C C2 GSP . . . B 2 20.276 11.637 10.631 1 21.53 ? C2 GSP 1174 A 1 HETATM 30 N N2 GSP . . . B 2 21.592 11.055 10.242 1 22.35 ? N2 GSP 1174 A 1 HETATM 31 N N3 GSP . . . B 2 19.388 11.548 9.637 1 21.02 ? N3 GSP 1174 A 1 HETATM 32 C C4 GSP . . . B 2 18.223 12.111 10.085 1 19.85 ? C4 GSP 1174 A 1 # _model_server_stats.io_time_ms 67 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 384 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 32 #