data_1OJD
#
_model_server_result.job_id            T3k9i6JHDC3GawKIoYFQoQ 
_model_server_result.datetime_utc      '2024-11-08 03:20:17' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1ojd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":600}' 
#
_entry.id    1OJD 
#
_exptl.entry_id    1OJD 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              785.55 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN-ADENINE DINUCLEOTIDE' 
_entity.pdbx_number_of_molecules    10 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90.14 
_cell.angle_beta          90.45 
_cell.angle_gamma         114.02 
_cell.entry_id            1OJD 
_cell.length_a            108.405 
_cell.length_b            132.431 
_cell.length_c            154.838 
_cell.Z_PDB               10 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1OJD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PQS dimeric 2 author_and_software_defined_assembly 1 
PQS dimeric 2 author_and_software_defined_assembly 2 
PQS dimeric 2 author_and_software_defined_assembly 3 
PQS dimeric 2 author_and_software_defined_assembly 4 
PQS dimeric 2 author_and_software_defined_assembly 5 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,K,L,M,N 1 1 
C,D,O,P,Q,R 2 1 
E,F,S,T,U,V 3 1 
G,H,W,X,Y,Z 4 1 
I,J,AA,BA,CA,DA 5 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 K N N 
? 2 M N N 
? 2 O N N 
? 2 Q N N 
? 2 S N N 
? 2 U N N 
? 2 W N N 
? 2 Y N N 
? 2 AA N N 
? 2 CA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 397 A CYS 397 1_555 K C8M FAD . A FAD 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.603 ? 
covale ? covale2 B SG CYS 397 B CYS 397 1_555 M C8M FAD . B FAD 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.608 ? 
covale ? covale3 C SG CYS 397 C CYS 397 1_555 O C8M FAD . C FAD 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.618 ? 
covale ? covale4 D SG CYS 397 D CYS 397 1_555 Q C8M FAD . D FAD 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.591 ? 
covale ? covale5 E SG CYS 397 E CYS 397 1_555 S C8M FAD . E FAD 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.614 ? 
covale ? covale6 F SG CYS 397 F CYS 397 1_555 U C8M FAD . F FAD 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.61 ? 
covale ? covale7 G SG CYS 397 G CYS 397 1_555 W C8M FAD . G FAD 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.616 ? 
covale ? covale8 H SG CYS 397 H CYS 397 1_555 Y C8M FAD . H FAD 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.604 ? 
covale ? covale9 I SG CYS 397 I CYS 397 1_555 AA C8M FAD . I FAD 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.62 ? 
covale ? covale10 J SG CYS 397 L CYS 397 1_555 CA C8M FAD . L FAD 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.628 ? 
#
_chem_comp.formula           'C27 H33 N9 O15 P2' 
_chem_comp.formula_weight    785.55 
_chem_comp.id                FAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN-ADENINE DINUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A FAD doub 83 n n 
PA O2A FAD sing 84 n n 
PA O5B FAD sing 85 n n 
PA O3P FAD sing 86 n n 
O2A HOA2 FAD sing 87 n n 
O5B C5B FAD sing 88 n n 
C5B C4B FAD sing 89 n n 
C5B H51A FAD sing 90 n n 
C5B H52A FAD sing 91 n n 
C4B O4B FAD sing 92 n n 
C4B C3B FAD sing 93 n n 
C4B H4B FAD sing 94 n n 
O4B C1B FAD sing 95 n n 
C3B O3B FAD sing 96 n n 
C3B C2B FAD sing 97 n n 
C3B H3B FAD sing 98 n n 
O3B HO3A FAD sing 99 n n 
C2B O2B FAD sing 100 n n 
C2B C1B FAD sing 101 n n 
C2B H2B FAD sing 102 n n 
O2B HO2A FAD sing 103 n n 
C1B N9A FAD sing 104 n n 
C1B H1B FAD sing 105 n n 
N9A C8A FAD sing 106 n y 
N9A C4A FAD sing 107 n y 
C8A N7A FAD doub 108 n y 
C8A H8A FAD sing 109 n n 
N7A C5A FAD sing 110 n y 
C5A C6A FAD sing 111 n y 
C5A C4A FAD doub 112 n y 
C6A N6A FAD sing 113 n n 
C6A N1A FAD doub 114 n y 
N6A H61A FAD sing 115 n n 
N6A H62A FAD sing 116 n n 
N1A C2A FAD sing 117 n y 
C2A N3A FAD doub 118 n y 
C2A H2A FAD sing 119 n n 
N3A C4A FAD sing 120 n y 
N1 C2 FAD sing 121 n n 
N1 C10 FAD doub 122 n n 
C2 O2 FAD doub 123 n n 
C2 N3 FAD sing 124 n n 
N3 C4 FAD sing 125 n n 
N3 HN3 FAD sing 126 n n 
C4 O4 FAD doub 127 n n 
C4 C4X FAD sing 128 n n 
C4X N5 FAD doub 129 n n 
C4X C10 FAD sing 130 n n 
N5 C5X FAD sing 131 n n 
C5X C6 FAD doub 132 n y 
C5X C9A FAD sing 133 n y 
C6 C7 FAD sing 134 n y 
C6 H6 FAD sing 135 n n 
C7 C7M FAD sing 136 n n 
C7 C8 FAD doub 137 n y 
C7M HM71 FAD sing 138 n n 
C7M HM72 FAD sing 139 n n 
C7M HM73 FAD sing 140 n n 
C8 C8M FAD sing 141 n n 
C8 C9 FAD sing 142 n y 
C8M HM81 FAD sing 143 n n 
C8M HM82 FAD sing 144 n n 
C8M HM83 FAD sing 145 n n 
C9 C9A FAD doub 146 n y 
C9 H9 FAD sing 147 n n 
C9A N10 FAD sing 148 n n 
N10 C10 FAD sing 149 n n 
N10 C1' FAD sing 150 n n 
C1' C2' FAD sing 151 n n 
C1' "H1'1" FAD sing 152 n n 
C1' "H1'2" FAD sing 153 n n 
C2' O2' FAD sing 154 n n 
C2' C3' FAD sing 155 n n 
C2' H2' FAD sing 156 n n 
O2' HO2' FAD sing 157 n n 
C3' O3' FAD sing 158 n n 
C3' C4' FAD sing 159 n n 
C3' H3' FAD sing 160 n n 
O3' HO3' FAD sing 161 n n 
C4' O4' FAD sing 162 n n 
C4' C5' FAD sing 163 n n 
C4' H4' FAD sing 164 n n 
O4' HO4' FAD sing 165 n n 
C5' O5' FAD sing 166 n n 
C5' "H5'1" FAD sing 167 n n 
C5' "H5'2" FAD sing 168 n n 
O5' P FAD sing 169 n n 
P O1P FAD doub 170 n n 
P O2P FAD sing 171 n n 
P O3P FAD sing 172 n n 
O2P HOP2 FAD sing 173 n n 
#
_atom_sites.entry_id                     1OJD 
_atom_sites.fract_transf_matrix[1][1]    0.009225 
_atom_sites.fract_transf_matrix[1][2]    0.004111 
_atom_sites.fract_transf_matrix[1][3]    0.000099 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008267 
_atom_sites.fract_transf_matrix[2][3]    0.000052 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006459 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
K 2 FAD A 1 600 600 FAD FAD . 
L 3 LDA A 1 601 601 LDA LDA . 
M 2 FAD B 1 600 600 FAD FAD . 
N 3 LDA B 1 601 601 LDA LDA . 
O 2 FAD C 1 600 600 FAD FAD . 
P 3 LDA C 1 601 601 LDA LDA . 
Q 2 FAD D 1 600 600 FAD FAD . 
R 3 LDA D 1 601 601 LDA LDA . 
S 2 FAD E 1 600 600 FAD FAD . 
T 3 LDA E 1 601 601 LDA LDA . 
U 2 FAD F 1 600 600 FAD FAD . 
V 3 LDA F 1 601 601 LDA LDA . 
W 2 FAD G 1 600 600 FAD FAD . 
X 3 LDA G 1 601 601 LDA LDA . 
Y 2 FAD H 1 600 600 FAD FAD . 
Z 3 LDA H 1 601 601 LDA LDA . 
AA 2 FAD I 1 600 600 FAD FAD . 
BA 3 LDA I 1 601 601 LDA LDA . 
CA 2 FAD L 1 600 600 FAD FAD . 
DA 3 LDA L 1 601 601 LDA LDA . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA FAD . . . M 2 -7.614 -11.833 -16.527 1 26.55 ? PA FAD 600 B 1 
HETATM 2 O O1A FAD . . . M 2 -6.255 -11.343 -16.2 1 27.99 ? O1A FAD 600 B 1 
HETATM 3 O O2A FAD . . . M 2 -7.679 -13.263 -17.049 1 28.64 ? O2A FAD 600 B 1 
HETATM 4 O O5B FAD . . . M 2 -8.209 -10.89 -17.685 1 30.06 ? O5B FAD 600 B 1 
HETATM 5 C C5B FAD . . . M 2 -7.875 -9.52 -17.755 1 31.64 ? C5B FAD 600 B 1 
HETATM 6 C C4B FAD . . . M 2 -7.582 -9.061 -19.174 1 32.87 ? C4B FAD 600 B 1 
HETATM 7 O O4B FAD . . . M 2 -7.465 -7.667 -19.133 1 33.27 ? O4B FAD 600 B 1 
HETATM 8 C C3B FAD . . . M 2 -6.257 -9.56 -19.695 1 34.27 ? C3B FAD 600 B 1 
HETATM 9 O O3B FAD . . . M 2 -6.456 -10.017 -21.007 1 35.03 ? O3B FAD 600 B 1 
HETATM 10 C C2B FAD . . . M 2 -5.365 -8.353 -19.736 1 34.45 ? C2B FAD 600 B 1 
HETATM 11 O O2B FAD . . . M 2 -4.497 -8.443 -20.824 1 33.52 ? O2B FAD 600 B 1 
HETATM 12 C C1B FAD . . . M 2 -6.381 -7.253 -19.918 1 34.83 ? C1B FAD 600 B 1 
HETATM 13 N N9A FAD . . . M 2 -5.896 -5.936 -19.476 1 35.75 ? N9A FAD 600 B 1 
HETATM 14 C C8A FAD . . . M 2 -5.154 -5.657 -18.373 1 35.42 ? C8A FAD 600 B 1 
HETATM 15 N N7A FAD . . . M 2 -4.906 -4.343 -18.336 1 35.93 ? N7A FAD 600 B 1 
HETATM 16 C C5A FAD . . . M 2 -5.476 -3.778 -19.393 1 37.04 ? C5A FAD 600 B 1 
HETATM 17 C C6A FAD . . . M 2 -5.52 -2.46 -19.802 1 38 ? C6A FAD 600 B 1 
HETATM 18 N N6A FAD . . . M 2 -4.999 -1.511 -19.023 1 39.31 ? N6A FAD 600 B 1 
HETATM 19 N N1A FAD . . . M 2 -6.21 -2.152 -20.956 1 37.28 ? N1A FAD 600 B 1 
HETATM 20 C C2A FAD . . . M 2 -6.827 -3.155 -21.682 1 37.03 ? C2A FAD 600 B 1 
HETATM 21 N N3A FAD . . . M 2 -6.784 -4.455 -21.265 1 36.15 ? N3A FAD 600 B 1 
HETATM 22 C C4A FAD . . . M 2 -6.114 -4.758 -20.129 1 36.82 ? C4A FAD 600 B 1 
HETATM 23 N N1 FAD . . . M 2 -7.904 -20.795 -12.525 1 47.03 ? N1 FAD 600 B 1 
HETATM 24 C C2 FAD . . . M 2 -8.61 -21.948 -12.355 1 46.4 ? C2 FAD 600 B 1 
HETATM 25 O O2 FAD . . . M 2 -9.837 -21.905 -12.333 1 46.26 ? O2 FAD 600 B 1 
HETATM 26 N N3 FAD . . . M 2 -7.951 -23.133 -12.188 1 46.76 ? N3 FAD 600 B 1 
HETATM 27 C C4 FAD . . . M 2 -6.579 -23.185 -12.208 1 47.46 ? C4 FAD 600 B 1 
HETATM 28 O O4 FAD . . . M 2 -6.018 -24.187 -12.634 1 49.4 ? O4 FAD 600 B 1 
HETATM 29 C C4X FAD . . . M 2 -5.877 -22.029 -12.38 1 46.83 ? C4X FAD 600 B 1 
HETATM 30 N N5 FAD . . . M 2 -4.506 -22.077 -12.412 1 46.6 ? N5 FAD 600 B 1 
HETATM 31 C C5X FAD . . . M 2 -3.792 -20.921 -12.622 1 45.74 ? C5X FAD 600 B 1 
HETATM 32 C C6 FAD . . . M 2 -2.414 -20.976 -12.651 1 45.92 ? C6 FAD 600 B 1 
HETATM 33 C C7 FAD . . . M 2 -1.671 -19.834 -12.877 1 45.47 ? C7 FAD 600 B 1 
HETATM 34 C C7M FAD . . . M 2 -0.257 -20.039 -13.359 1 46.5 ? C7M FAD 600 B 1 
HETATM 35 C C8 FAD . . . M 2 -2.327 -18.618 -13.077 1 45.04 ? C8 FAD 600 B 1 
HETATM 36 C C8M FAD . . . M 2 -1.694 -17.608 -13.992 1 41.54 ? C8M FAD 600 B 1 
HETATM 37 C C9 FAD . . . M 2 -3.714 -18.587 -13.038 1 45.4 ? C9 FAD 600 B 1 
HETATM 38 C C9A FAD . . . M 2 -4.451 -19.725 -12.816 1 45.06 ? C9A FAD 600 B 1 
HETATM 39 N N10 FAD . . . M 2 -5.828 -19.678 -12.756 1 44.33 ? N10 FAD 600 B 1 
HETATM 40 C C10 FAD . . . M 2 -6.539 -20.833 -12.546 1 46.32 ? C10 FAD 600 B 1 
HETATM 41 C C1' FAD . . . M 2 -6.51 -18.434 -12.32 1 41.45 ? C1' FAD 600 B 1 
HETATM 42 C C2' FAD . . . M 2 -7.335 -17.944 -13.492 1 38.91 ? C2' FAD 600 B 1 
HETATM 43 O O2' FAD . . . M 2 -6.441 -17.802 -14.566 1 38.4 ? O2' FAD 600 B 1 
HETATM 44 C C3' FAD . . . M 2 -8.008 -16.615 -13.205 1 37.85 ? C3' FAD 600 B 1 
HETATM 45 O O3' FAD . . . M 2 -8.825 -16.755 -12.078 1 37.87 ? O3' FAD 600 B 1 
HETATM 46 C C4' FAD . . . M 2 -8.888 -16.113 -14.333 1 36.84 ? C4' FAD 600 B 1 
HETATM 47 O O4' FAD . . . M 2 -8.335 -16.416 -15.594 1 38.04 ? O4' FAD 600 B 1 
HETATM 48 C C5' FAD . . . M 2 -9.063 -14.6 -14.233 1 35.48 ? C5' FAD 600 B 1 
HETATM 49 O O5' FAD . . . M 2 -9.674 -14.06 -15.402 1 33.89 ? O5' FAD 600 B 1 
HETATM 50 P P FAD . . . M 2 -10.057 -12.526 -15.465 1 29.69 ? P FAD 600 B 1 
HETATM 51 O O1P FAD . . . M 2 -10.723 -12.198 -16.718 1 31.8 ? O1P FAD 600 B 1 
HETATM 52 O O2P FAD . . . M 2 -10.926 -12.247 -14.274 1 31.29 ? O2P FAD 600 B 1 
HETATM 53 O O3P FAD . . . M 2 -8.64 -11.773 -15.317 1 28.91 ? O3P FAD 600 B 1 
#
_model_server_stats.io_time_ms              24 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    170 
_model_server_stats.query_time_ms           392 
_model_server_stats.encode_time_ms          19 
_model_server_stats.element_count           53 
#