data_1OJD
#
_model_server_result.job_id            MGbWeXWsM6RTkt5ZwztwLA 
_model_server_result.datetime_utc      '2024-11-24 10:56:08' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1ojd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"U","auth_seq_id":600}' 
#
_entry.id    1OJD 
#
_exptl.entry_id    1OJD 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              785.55 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN-ADENINE DINUCLEOTIDE' 
_entity.pdbx_number_of_molecules    10 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90.14 
_cell.angle_beta          90.45 
_cell.angle_gamma         114.02 
_cell.entry_id            1OJD 
_cell.length_a            108.405 
_cell.length_b            132.431 
_cell.length_c            154.838 
_cell.Z_PDB               10 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1OJD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PQS dimeric 2 author_and_software_defined_assembly 1 
PQS dimeric 2 author_and_software_defined_assembly 2 
PQS dimeric 2 author_and_software_defined_assembly 3 
PQS dimeric 2 author_and_software_defined_assembly 4 
PQS dimeric 2 author_and_software_defined_assembly 5 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,K,L,M,N 1 1 
C,D,O,P,Q,R 2 1 
E,F,S,T,U,V 3 1 
G,H,W,X,Y,Z 4 1 
I,J,AA,BA,CA,DA 5 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 K N N 
? 2 M N N 
? 2 O N N 
? 2 Q N N 
? 2 S N N 
? 2 U N N 
? 2 W N N 
? 2 Y N N 
? 2 AA N N 
? 2 CA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 397 A CYS 397 1_555 K C8M FAD . A FAD 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.603 ? 
covale ? covale2 B SG CYS 397 B CYS 397 1_555 M C8M FAD . B FAD 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.608 ? 
covale ? covale3 C SG CYS 397 C CYS 397 1_555 O C8M FAD . C FAD 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.618 ? 
covale ? covale4 D SG CYS 397 D CYS 397 1_555 Q C8M FAD . D FAD 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.591 ? 
covale ? covale5 E SG CYS 397 E CYS 397 1_555 S C8M FAD . E FAD 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.614 ? 
covale ? covale6 F SG CYS 397 F CYS 397 1_555 U C8M FAD . F FAD 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.61 ? 
covale ? covale7 G SG CYS 397 G CYS 397 1_555 W C8M FAD . G FAD 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.616 ? 
covale ? covale8 H SG CYS 397 H CYS 397 1_555 Y C8M FAD . H FAD 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.604 ? 
covale ? covale9 I SG CYS 397 I CYS 397 1_555 AA C8M FAD . I FAD 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.62 ? 
covale ? covale10 J SG CYS 397 L CYS 397 1_555 CA C8M FAD . L FAD 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.628 ? 
#
_chem_comp.formula           'C27 H33 N9 O15 P2' 
_chem_comp.formula_weight    785.55 
_chem_comp.id                FAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN-ADENINE DINUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A FAD doub 83 n n 
PA O2A FAD sing 84 n n 
PA O5B FAD sing 85 n n 
PA O3P FAD sing 86 n n 
O2A HOA2 FAD sing 87 n n 
O5B C5B FAD sing 88 n n 
C5B C4B FAD sing 89 n n 
C5B H51A FAD sing 90 n n 
C5B H52A FAD sing 91 n n 
C4B O4B FAD sing 92 n n 
C4B C3B FAD sing 93 n n 
C4B H4B FAD sing 94 n n 
O4B C1B FAD sing 95 n n 
C3B O3B FAD sing 96 n n 
C3B C2B FAD sing 97 n n 
C3B H3B FAD sing 98 n n 
O3B HO3A FAD sing 99 n n 
C2B O2B FAD sing 100 n n 
C2B C1B FAD sing 101 n n 
C2B H2B FAD sing 102 n n 
O2B HO2A FAD sing 103 n n 
C1B N9A FAD sing 104 n n 
C1B H1B FAD sing 105 n n 
N9A C8A FAD sing 106 n y 
N9A C4A FAD sing 107 n y 
C8A N7A FAD doub 108 n y 
C8A H8A FAD sing 109 n n 
N7A C5A FAD sing 110 n y 
C5A C6A FAD sing 111 n y 
C5A C4A FAD doub 112 n y 
C6A N6A FAD sing 113 n n 
C6A N1A FAD doub 114 n y 
N6A H61A FAD sing 115 n n 
N6A H62A FAD sing 116 n n 
N1A C2A FAD sing 117 n y 
C2A N3A FAD doub 118 n y 
C2A H2A FAD sing 119 n n 
N3A C4A FAD sing 120 n y 
N1 C2 FAD sing 121 n n 
N1 C10 FAD doub 122 n n 
C2 O2 FAD doub 123 n n 
C2 N3 FAD sing 124 n n 
N3 C4 FAD sing 125 n n 
N3 HN3 FAD sing 126 n n 
C4 O4 FAD doub 127 n n 
C4 C4X FAD sing 128 n n 
C4X N5 FAD doub 129 n n 
C4X C10 FAD sing 130 n n 
N5 C5X FAD sing 131 n n 
C5X C6 FAD doub 132 n y 
C5X C9A FAD sing 133 n y 
C6 C7 FAD sing 134 n y 
C6 H6 FAD sing 135 n n 
C7 C7M FAD sing 136 n n 
C7 C8 FAD doub 137 n y 
C7M HM71 FAD sing 138 n n 
C7M HM72 FAD sing 139 n n 
C7M HM73 FAD sing 140 n n 
C8 C8M FAD sing 141 n n 
C8 C9 FAD sing 142 n y 
C8M HM81 FAD sing 143 n n 
C8M HM82 FAD sing 144 n n 
C8M HM83 FAD sing 145 n n 
C9 C9A FAD doub 146 n y 
C9 H9 FAD sing 147 n n 
C9A N10 FAD sing 148 n n 
N10 C10 FAD sing 149 n n 
N10 C1' FAD sing 150 n n 
C1' C2' FAD sing 151 n n 
C1' "H1'1" FAD sing 152 n n 
C1' "H1'2" FAD sing 153 n n 
C2' O2' FAD sing 154 n n 
C2' C3' FAD sing 155 n n 
C2' H2' FAD sing 156 n n 
O2' HO2' FAD sing 157 n n 
C3' O3' FAD sing 158 n n 
C3' C4' FAD sing 159 n n 
C3' H3' FAD sing 160 n n 
O3' HO3' FAD sing 161 n n 
C4' O4' FAD sing 162 n n 
C4' C5' FAD sing 163 n n 
C4' H4' FAD sing 164 n n 
O4' HO4' FAD sing 165 n n 
C5' O5' FAD sing 166 n n 
C5' "H5'1" FAD sing 167 n n 
C5' "H5'2" FAD sing 168 n n 
O5' P FAD sing 169 n n 
P O1P FAD doub 170 n n 
P O2P FAD sing 171 n n 
P O3P FAD sing 172 n n 
O2P HOP2 FAD sing 173 n n 
#
_atom_sites.entry_id                     1OJD 
_atom_sites.fract_transf_matrix[1][1]    0.009225 
_atom_sites.fract_transf_matrix[1][2]    0.004111 
_atom_sites.fract_transf_matrix[1][3]    0.000099 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008267 
_atom_sites.fract_transf_matrix[2][3]    0.000052 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006459 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
K 2 FAD A 1 600 600 FAD FAD . 
L 3 LDA A 1 601 601 LDA LDA . 
M 2 FAD B 1 600 600 FAD FAD . 
N 3 LDA B 1 601 601 LDA LDA . 
O 2 FAD C 1 600 600 FAD FAD . 
P 3 LDA C 1 601 601 LDA LDA . 
Q 2 FAD D 1 600 600 FAD FAD . 
R 3 LDA D 1 601 601 LDA LDA . 
S 2 FAD E 1 600 600 FAD FAD . 
T 3 LDA E 1 601 601 LDA LDA . 
U 2 FAD F 1 600 600 FAD FAD . 
V 3 LDA F 1 601 601 LDA LDA . 
W 2 FAD G 1 600 600 FAD FAD . 
X 3 LDA G 1 601 601 LDA LDA . 
Y 2 FAD H 1 600 600 FAD FAD . 
Z 3 LDA H 1 601 601 LDA LDA . 
AA 2 FAD I 1 600 600 FAD FAD . 
BA 3 LDA I 1 601 601 LDA LDA . 
CA 2 FAD L 1 600 600 FAD FAD . 
DA 3 LDA L 1 601 601 LDA LDA . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA FAD . . . U 2 63.875 29.87 40.716 1 26.79 ? PA FAD 600 F 1 
HETATM 2 O O1A FAD . . . U 2 63.902 28.84 41.796 1 28.02 ? O1A FAD 600 F 1 
HETATM 3 O O2A FAD . . . U 2 64.022 31.262 41.318 1 28.97 ? O2A FAD 600 F 1 
HETATM 4 O O5B FAD . . . U 2 62.509 29.773 39.859 1 29.93 ? O5B FAD 600 F 1 
HETATM 5 C C5B FAD . . . U 2 61.914 28.508 39.775 1 31.75 ? C5B FAD 600 F 1 
HETATM 6 C C4B FAD . . . U 2 60.432 28.478 40.114 1 33.04 ? C4B FAD 600 F 1 
HETATM 7 O O4B FAD . . . U 2 59.936 27.212 39.705 1 33.5 ? O4B FAD 600 F 1 
HETATM 8 C C3B FAD . . . U 2 60.139 28.553 41.595 1 34.24 ? C3B FAD 600 F 1 
HETATM 9 O O3B FAD . . . U 2 59.127 29.504 41.789 1 35.08 ? O3B FAD 600 F 1 
HETATM 10 C C2B FAD . . . U 2 59.583 27.185 41.947 1 34.45 ? C2B FAD 600 F 1 
HETATM 11 O O2B FAD . . . U 2 58.584 27.286 42.912 1 33.29 ? O2B FAD 600 F 1 
HETATM 12 C C1B FAD . . . U 2 59.014 26.723 40.632 1 34.88 ? C1B FAD 600 F 1 
HETATM 13 N N9A FAD . . . U 2 58.898 25.269 40.522 1 35.79 ? N9A FAD 600 F 1 
HETATM 14 C C8A FAD . . . U 2 59.804 24.33 40.91 1 35.43 ? C8A FAD 600 F 1 
HETATM 15 N N7A FAD . . . U 2 59.312 23.115 40.626 1 36.04 ? N7A FAD 600 F 1 
HETATM 16 C C5A FAD . . . U 2 58.094 23.265 40.066 1 37.11 ? C5A FAD 600 F 1 
HETATM 17 C C6A FAD . . . U 2 57.168 22.348 39.597 1 37.78 ? C6A FAD 600 F 1 
HETATM 18 N N6A FAD . . . U 2 57.461 21.059 39.661 1 39.46 ? N6A FAD 600 F 1 
HETATM 19 N N1A FAD . . . U 2 55.989 22.764 39.041 1 36.97 ? N1A FAD 600 F 1 
HETATM 20 C C2A FAD . . . U 2 55.739 24.118 38.958 1 37.09 ? C2A FAD 600 F 1 
HETATM 21 N N3A FAD . . . U 2 56.645 25.048 39.427 1 36.37 ? N3A FAD 600 F 1 
HETATM 22 C C4A FAD . . . U 2 57.814 24.619 39.983 1 37 ? C4A FAD 600 F 1 
HETATM 23 N N1 FAD . . . U 2 71.185 36.001 43.351 1 47.3 ? N1 FAD 600 F 1 
HETATM 24 C C2 FAD . . . U 2 71.845 37.168 43.086 1 46.57 ? C2 FAD 600 F 1 
HETATM 25 O O2 FAD . . . U 2 71.866 37.608 41.932 1 46.26 ? O2 FAD 600 F 1 
HETATM 26 N N3 FAD . . . U 2 72.472 37.811 44.13 1 47.05 ? N3 FAD 600 F 1 
HETATM 27 C C4 FAD . . . U 2 72.439 37.313 45.421 1 47.64 ? C4 FAD 600 F 1 
HETATM 28 O O4 FAD . . . U 2 72.479 38.093 46.368 1 49.64 ? O4 FAD 600 F 1 
HETATM 29 C C4X FAD . . . U 2 71.772 36.143 45.662 1 46.87 ? C4X FAD 600 F 1 
HETATM 30 N N5 FAD . . . U 2 71.726 35.639 46.934 1 46.62 ? N5 FAD 600 F 1 
HETATM 31 C C5X FAD . . . U 2 71.029 34.48 47.181 1 45.8 ? C5X FAD 600 F 1 
HETATM 32 C C6 FAD . . . U 2 70.978 33.983 48.465 1 45.89 ? C6 FAD 600 F 1 
HETATM 33 C C7 FAD . . . U 2 70.282 32.82 48.721 1 45.48 ? C7 FAD 600 F 1 
HETATM 34 C C7M FAD . . . U 2 69.945 32.565 50.16 1 46.48 ? C7M FAD 600 F 1 
HETATM 35 C C8 FAD . . . U 2 69.614 32.142 47.69 1 45.13 ? C8 FAD 600 F 1 
HETATM 36 C C8M FAD . . . U 2 68.327 31.424 47.987 1 41.66 ? C8M FAD 600 F 1 
HETATM 37 C C9 FAD . . . U 2 69.679 32.651 46.405 1 45.54 ? C9 FAD 600 F 1 
HETATM 38 C C9A FAD . . . U 2 70.378 33.825 46.145 1 45.28 ? C9A FAD 600 F 1 
HETATM 39 N N10 FAD . . . U 2 70.446 34.337 44.858 1 44.38 ? N10 FAD 600 F 1 
HETATM 40 C C10 FAD . . . U 2 71.136 35.496 44.628 1 46.37 ? C10 FAD 600 F 1 
HETATM 41 C C1' FAD . . . U 2 70.359 33.434 43.678 1 41.51 ? C1' FAD 600 F 1 
HETATM 42 C C2' FAD . . . U 2 69.119 33.804 42.893 1 38.81 ? C2' FAD 600 F 1 
HETATM 43 O O2' FAD . . . U 2 68.05 33.675 43.798 1 38.23 ? O2' FAD 600 F 1 
HETATM 44 C C3' FAD . . . U 2 68.936 32.872 41.701 1 38.03 ? C3' FAD 600 F 1 
HETATM 45 O O3' FAD . . . U 2 70.043 32.963 40.825 1 37.84 ? O3' FAD 600 F 1 
HETATM 46 C C4' FAD . . . U 2 67.667 33.136 40.907 1 37.01 ? C4' FAD 600 F 1 
HETATM 47 O O4' FAD . . . U 2 66.618 33.576 41.747 1 38.11 ? O4' FAD 600 F 1 
HETATM 48 C C5' FAD . . . U 2 67.174 31.871 40.204 1 35.57 ? C5' FAD 600 F 1 
HETATM 49 O O5' FAD . . . U 2 65.892 32.109 39.617 1 34 ? O5' FAD 600 F 1 
HETATM 50 P P FAD . . . U 2 65.242 31.014 38.658 1 30.13 ? P FAD 600 F 1 
HETATM 51 O O1P FAD . . . U 2 63.94 31.413 38.132 1 32.06 ? O1P FAD 600 F 1 
HETATM 52 O O2P FAD . . . U 2 66.284 30.766 37.554 1 31.45 ? O2P FAD 600 F 1 
HETATM 53 O O3P FAD . . . U 2 65.014 29.753 39.625 1 28.86 ? O3P FAD 600 F 1 
#
_model_server_stats.io_time_ms              20 
_model_server_stats.parse_time_ms           28 
_model_server_stats.create_model_time_ms    45 
_model_server_stats.query_time_ms           315 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           53 
#