data_1OJD # _model_server_result.job_id wQ_DeOqGmYqL65dNi_mO3Q _model_server_result.datetime_utc '2024-11-08 03:23:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ojd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":601}' # _entry.id 1OJD # _exptl.entry_id 1OJD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 229.402 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'LAURYL DIMETHYLAMINE-N-OXIDE' _entity.pdbx_number_of_molecules 10 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90.14 _cell.angle_beta 90.45 _cell.angle_gamma 114.02 _cell.entry_id 1OJD _cell.length_a 108.405 _cell.length_b 132.431 _cell.length_c 154.838 _cell.Z_PDB 10 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1OJD _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS dimeric 2 author_and_software_defined_assembly 1 PQS dimeric 2 author_and_software_defined_assembly 2 PQS dimeric 2 author_and_software_defined_assembly 3 PQS dimeric 2 author_and_software_defined_assembly 4 PQS dimeric 2 author_and_software_defined_assembly 5 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,K,L,M,N 1 1 C,D,O,P,Q,R 2 1 E,F,S,T,U,V 3 1 G,H,W,X,Y,Z 4 1 I,J,AA,BA,CA,DA 5 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 L N N ? 3 N N N ? 3 P N N ? 3 R N N ? 3 T N N ? 3 V N N ? 3 X N N ? 3 Z N N ? 3 BA N N ? 3 DA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 397 A CYS 397 1_555 K C8M FAD . A FAD 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.603 ? covale ? covale2 B SG CYS 397 B CYS 397 1_555 M C8M FAD . B FAD 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.608 ? covale ? covale3 C SG CYS 397 C CYS 397 1_555 O C8M FAD . C FAD 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.618 ? covale ? covale4 D SG CYS 397 D CYS 397 1_555 Q C8M FAD . D FAD 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.591 ? covale ? covale5 E SG CYS 397 E CYS 397 1_555 S C8M FAD . E FAD 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.614 ? covale ? covale6 F SG CYS 397 F CYS 397 1_555 U C8M FAD . F FAD 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.61 ? covale ? covale7 G SG CYS 397 G CYS 397 1_555 W C8M FAD . G FAD 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.616 ? covale ? covale8 H SG CYS 397 H CYS 397 1_555 Y C8M FAD . H FAD 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.604 ? covale ? covale9 I SG CYS 397 I CYS 397 1_555 AA C8M FAD . I FAD 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.62 ? covale ? covale10 J SG CYS 397 L CYS 397 1_555 CA C8M FAD . L FAD 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.628 ? # _chem_comp.formula 'C14 H31 N O' _chem_comp.formula_weight 229.402 _chem_comp.id LDA _chem_comp.mon_nstd_flag . _chem_comp.name 'LAURYL DIMETHYLAMINE-N-OXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 O1 LDA sing 262 n n N1 CM1 LDA sing 263 n n N1 CM2 LDA sing 264 n n N1 C1 LDA sing 265 n n CM1 HM11 LDA sing 266 n n CM1 HM12 LDA sing 267 n n CM1 HM13 LDA sing 268 n n CM2 HM21 LDA sing 269 n n CM2 HM22 LDA sing 270 n n CM2 HM23 LDA sing 271 n n C1 C2 LDA sing 272 n n C1 H11 LDA sing 273 n n C1 H12 LDA sing 274 n n C2 C3 LDA sing 275 n n C2 H21 LDA sing 276 n n C2 H22 LDA sing 277 n n C3 C4 LDA sing 278 n n C3 H31 LDA sing 279 n n C3 H32 LDA sing 280 n n C4 C5 LDA sing 281 n n C4 H41 LDA sing 282 n n C4 H42 LDA sing 283 n n C5 C6 LDA sing 284 n n C5 H51 LDA sing 285 n n C5 H52 LDA sing 286 n n C6 C7 LDA sing 287 n n C6 H61 LDA sing 288 n n C6 H62 LDA sing 289 n n C7 C8 LDA sing 290 n n C7 H71 LDA sing 291 n n C7 H72 LDA sing 292 n n C8 C9 LDA sing 293 n n C8 H81 LDA sing 294 n n C8 H82 LDA sing 295 n n C9 C10 LDA sing 296 n n C9 H91 LDA sing 297 n n C9 H92 LDA sing 298 n n C10 C11 LDA sing 299 n n C10 H101 LDA sing 300 n n C10 H102 LDA sing 301 n n C11 C12 LDA sing 302 n n C11 H111 LDA sing 303 n n C11 H112 LDA sing 304 n n C12 H121 LDA sing 305 n n C12 H122 LDA sing 306 n n C12 H123 LDA sing 307 n n # _atom_sites.entry_id 1OJD _atom_sites.fract_transf_matrix[1][1] 0.009225 _atom_sites.fract_transf_matrix[1][2] 0.004111 _atom_sites.fract_transf_matrix[1][3] 0.000099 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008267 _atom_sites.fract_transf_matrix[2][3] 0.000052 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006459 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code K 2 FAD A 1 600 600 FAD FAD . L 3 LDA A 1 601 601 LDA LDA . M 2 FAD B 1 600 600 FAD FAD . N 3 LDA B 1 601 601 LDA LDA . O 2 FAD C 1 600 600 FAD FAD . P 3 LDA C 1 601 601 LDA LDA . Q 2 FAD D 1 600 600 FAD FAD . R 3 LDA D 1 601 601 LDA LDA . S 2 FAD E 1 600 600 FAD FAD . T 3 LDA E 1 601 601 LDA LDA . U 2 FAD F 1 600 600 FAD FAD . V 3 LDA F 1 601 601 LDA LDA . W 2 FAD G 1 600 600 FAD FAD . X 3 LDA G 1 601 601 LDA LDA . Y 2 FAD H 1 600 600 FAD FAD . Z 3 LDA H 1 601 601 LDA LDA . AA 2 FAD I 1 600 600 FAD FAD . BA 3 LDA I 1 601 601 LDA LDA . CA 2 FAD L 1 600 600 FAD FAD . DA 3 LDA L 1 601 601 LDA LDA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 LDA . . . P 3 -1.235 14.992 81.677 1 38.6 ? N1 LDA 601 C 1 HETATM 2 O O1 LDA . . . P 3 -0.333 14.099 81.647 1 39.92 ? O1 LDA 601 C 1 HETATM 3 C CM1 LDA . . . P 3 -2.563 14.443 81.356 1 38.78 ? CM1 LDA 601 C 1 HETATM 4 C CM2 LDA . . . P 3 -1.312 15.507 83.044 1 38.85 ? CM2 LDA 601 C 1 HETATM 5 C C1 LDA . . . P 3 -0.881 16.081 80.766 1 36.03 ? C1 LDA 601 C 1 HETATM 6 C C2 LDA . . . P 3 -1.482 15.741 79.426 1 32.1 ? C2 LDA 601 C 1 HETATM 7 C C3 LDA . . . P 3 -0.842 16.616 78.386 1 31.56 ? C3 LDA 601 C 1 HETATM 8 C C4 LDA . . . P 3 -0.82 15.874 77.04 1 31.8 ? C4 LDA 601 C 1 HETATM 9 C C5 LDA . . . P 3 -0.545 16.847 75.919 1 31.42 ? C5 LDA 601 C 1 HETATM 10 C C6 LDA . . . P 3 -1.199 16.275 74.703 1 31.81 ? C6 LDA 601 C 1 HETATM 11 C C7 LDA . . . P 3 -0.24 16.343 73.534 1 33.85 ? C7 LDA 601 C 1 HETATM 12 C C8 LDA . . . P 3 -0.95 16.592 72.208 1 34.12 ? C8 LDA 601 C 1 HETATM 13 C C9 LDA . . . P 3 -1.165 18.087 71.95 1 34.46 ? C9 LDA 601 C 1 HETATM 14 C C10 LDA . . . P 3 -1.658 18.304 70.531 1 33.9 ? C10 LDA 601 C 1 HETATM 15 C C11 LDA . . . P 3 -0.778 17.49 69.622 1 33.75 ? C11 LDA 601 C 1 HETATM 16 C C12 LDA . . . P 3 0.22 18.482 69.089 1 35.7 ? C12 LDA 601 C 1 # _model_server_stats.io_time_ms 29 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 139 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 16 #