data_1OJL # _model_server_result.job_id YsW2i6qA8LbaM4INWiatJA _model_server_result.datetime_utc '2024-11-14 03:46:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ojl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":1442}' # _entry.id 1OJL # _exptl.entry_id 1OJL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1OJL _cell.length_a 107.44 _cell.length_b 114.74 _cell.length_c 187.26 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1OJL _symmetry.cell_setting ? _symmetry.Int_Tables_number 17 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS hexameric 6 author_and_software_defined_assembly 1 PQS hexameric 6 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,G,H,I,M,N,O 1 1,2 D,E,F,J,K,L,P,Q,R 2 1,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_555 -x,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 0 0 93.63 3 'crystal symmetry operation' 3_454 -x-1,y,-z-1/2 -1 0 0 0 1 0 0 0 -1 -107.44 0 -93.63 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id K _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 1OJL _atom_sites.fract_transf_matrix[1][1] 0.009307 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008715 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00534 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 PO4 A 1 1442 1442 PO4 PO4 . H 2 PO4 B 1 1390 1390 PO4 PO4 . I 2 PO4 C 1 1391 1391 PO4 PO4 . J 2 PO4 D 1 1442 1442 PO4 PO4 . K 3 ATP E 1 1442 1442 ATP ATP . L 2 PO4 F 1 1390 1390 PO4 PO4 . M 4 HOH A 1 2001 2001 HOH HOH . M 4 HOH A 2 2002 2002 HOH HOH . M 4 HOH A 3 2003 2003 HOH HOH . M 4 HOH A 4 2004 2004 HOH HOH . M 4 HOH A 5 2005 2005 HOH HOH . M 4 HOH A 6 2006 2006 HOH HOH . M 4 HOH A 7 2007 2007 HOH HOH . M 4 HOH A 8 2008 2008 HOH HOH . M 4 HOH A 9 2009 2009 HOH HOH . M 4 HOH A 10 2010 2010 HOH HOH . M 4 HOH A 11 2011 2011 HOH HOH . M 4 HOH A 12 2012 2012 HOH HOH . M 4 HOH A 13 2013 2013 HOH HOH . M 4 HOH A 14 2014 2014 HOH HOH . M 4 HOH A 15 2015 2015 HOH HOH . M 4 HOH A 16 2016 2016 HOH HOH . N 4 HOH B 1 2001 2001 HOH HOH . N 4 HOH B 2 2002 2002 HOH HOH . N 4 HOH B 3 2003 2003 HOH HOH . N 4 HOH B 4 2004 2004 HOH HOH . N 4 HOH B 5 2005 2005 HOH HOH . N 4 HOH B 6 2006 2006 HOH HOH . N 4 HOH B 7 2007 2007 HOH HOH . N 4 HOH B 8 2008 2008 HOH HOH . N 4 HOH B 9 2009 2009 HOH HOH . N 4 HOH B 10 2010 2010 HOH HOH . N 4 HOH B 11 2011 2011 HOH HOH . N 4 HOH B 12 2012 2012 HOH HOH . N 4 HOH B 13 2013 2013 HOH HOH . N 4 HOH B 14 2014 2014 HOH HOH . N 4 HOH B 15 2015 2015 HOH HOH . N 4 HOH B 16 2016 2016 HOH HOH . N 4 HOH B 17 2017 2017 HOH HOH . N 4 HOH B 18 2018 2018 HOH HOH . N 4 HOH B 19 2019 2019 HOH HOH . N 4 HOH B 20 2020 2020 HOH HOH . O 4 HOH C 1 2001 2001 HOH HOH . O 4 HOH C 2 2002 2002 HOH HOH . O 4 HOH C 3 2003 2003 HOH HOH . O 4 HOH C 4 2004 2004 HOH HOH . O 4 HOH C 5 2005 2005 HOH HOH . O 4 HOH C 6 2006 2006 HOH HOH . O 4 HOH C 7 2007 2007 HOH HOH . O 4 HOH C 8 2008 2008 HOH HOH . O 4 HOH C 9 2009 2009 HOH HOH . O 4 HOH C 10 2010 2010 HOH HOH . O 4 HOH C 11 2011 2011 HOH HOH . O 4 HOH C 12 2012 2012 HOH HOH . O 4 HOH C 13 2013 2013 HOH HOH . O 4 HOH C 14 2014 2014 HOH HOH . O 4 HOH C 15 2015 2015 HOH HOH . O 4 HOH C 16 2016 2016 HOH HOH . P 4 HOH D 1 2001 2001 HOH HOH . P 4 HOH D 2 2002 2002 HOH HOH . P 4 HOH D 3 2003 2003 HOH HOH . P 4 HOH D 4 2004 2004 HOH HOH . P 4 HOH D 5 2005 2005 HOH HOH . P 4 HOH D 6 2006 2006 HOH HOH . P 4 HOH D 7 2007 2007 HOH HOH . P 4 HOH D 8 2008 2008 HOH HOH . P 4 HOH D 9 2009 2009 HOH HOH . P 4 HOH D 10 2010 2010 HOH HOH . P 4 HOH D 11 2011 2011 HOH HOH . P 4 HOH D 12 2012 2012 HOH HOH . P 4 HOH D 13 2013 2013 HOH HOH . P 4 HOH D 14 2014 2014 HOH HOH . P 4 HOH D 15 2015 2015 HOH HOH . P 4 HOH D 16 2016 2016 HOH HOH . P 4 HOH D 17 2017 2017 HOH HOH . P 4 HOH D 18 2018 2018 HOH HOH . P 4 HOH D 19 2019 2019 HOH HOH . P 4 HOH D 20 2020 2020 HOH HOH . P 4 HOH D 21 2021 2021 HOH HOH . P 4 HOH D 22 2022 2022 HOH HOH . P 4 HOH D 23 2023 2023 HOH HOH . Q 4 HOH E 1 2001 2001 HOH HOH . Q 4 HOH E 2 2002 2002 HOH HOH . Q 4 HOH E 3 2003 2003 HOH HOH . Q 4 HOH E 4 2004 2004 HOH HOH . Q 4 HOH E 5 2005 2005 HOH HOH . Q 4 HOH E 6 2006 2006 HOH HOH . Q 4 HOH E 7 2007 2007 HOH HOH . Q 4 HOH E 8 2008 2008 HOH HOH . Q 4 HOH E 9 2009 2009 HOH HOH . Q 4 HOH E 10 2010 2010 HOH HOH . Q 4 HOH E 11 2011 2011 HOH HOH . Q 4 HOH E 12 2012 2012 HOH HOH . Q 4 HOH E 13 2013 2013 HOH HOH . Q 4 HOH E 14 2014 2014 HOH HOH . Q 4 HOH E 15 2015 2015 HOH HOH . Q 4 HOH E 16 2016 2016 HOH HOH . Q 4 HOH E 17 2017 2017 HOH HOH . R 4 HOH F 1 2001 2001 HOH HOH . R 4 HOH F 2 2002 2002 HOH HOH . R 4 HOH F 3 2003 2003 HOH HOH . R 4 HOH F 4 2004 2004 HOH HOH . R 4 HOH F 5 2005 2005 HOH HOH . R 4 HOH F 6 2006 2006 HOH HOH . R 4 HOH F 7 2007 2007 HOH HOH . R 4 HOH F 8 2008 2008 HOH HOH . R 4 HOH F 9 2009 2009 HOH HOH . R 4 HOH F 10 2010 2010 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . K 3 -38.235 -36.705 -17.311 0.5 141.92 ? PG ATP 1442 E 1 HETATM 2 O O1G ATP . . . K 3 -38.139 -35.372 -16.667 0.5 139.7 ? O1G ATP 1442 E 1 HETATM 3 O O2G ATP . . . K 3 -39.672 -36.904 -17.806 0.5 142.83 ? O2G ATP 1442 E 1 HETATM 4 O O3G ATP . . . K 3 -37.284 -36.805 -18.528 0.5 135.18 ? O3G ATP 1442 E 1 HETATM 5 P PB ATP . . . K 3 -37.091 -39.164 -16.479 0.3 135.87 ? PB ATP 1442 E 1 HETATM 6 O O1B ATP . . . K 3 -37.26 -40.019 -15.284 0.3 133.08 ? O1B ATP 1442 E 1 HETATM 7 O O2B ATP . . . K 3 -37.649 -39.883 -17.725 0.3 137.17 ? O2B ATP 1442 E 1 HETATM 8 O O3B ATP . . . K 3 -37.854 -37.78 -16.183 0.3 131.63 ? O3B ATP 1442 E 1 HETATM 9 P PA ATP . . . K 3 -34.797 -37.432 -16.594 0.3 127.63 ? PA ATP 1442 E 1 HETATM 10 O O1A ATP . . . K 3 -35.145 -36.61 -17.759 0.3 123.68 ? O1A ATP 1442 E 1 HETATM 11 O O2A ATP . . . K 3 -35.079 -36.792 -15.222 0.3 126.09 ? O2A ATP 1442 E 1 HETATM 12 O O3A ATP . . . K 3 -35.507 -38.877 -16.681 0.3 131.05 ? O3A ATP 1442 E 1 HETATM 13 O O5' ATP . . . K 3 -33.216 -37.672 -16.769 0.3 130.14 ? O5' ATP 1442 E 1 HETATM 14 C C5' ATP . . . K 3 -32.725 -38.79 -16.105 0.3 132.74 ? C5' ATP 1442 E 1 HETATM 15 C C4' ATP . . . K 3 -31.255 -38.749 -15.82 0.3 129.52 ? C4' ATP 1442 E 1 HETATM 16 O O4' ATP . . . K 3 -30.985 -37.802 -14.816 0.3 133.22 ? O4' ATP 1442 E 1 HETATM 17 C C3' ATP . . . K 3 -31.113 -40.117 -15.194 0.3 130.6 ? C3' ATP 1442 E 1 HETATM 18 O O3' ATP . . . K 3 -30.476 -41.021 -16.067 0.3 130.91 ? O3' ATP 1442 E 1 HETATM 19 C C2' ATP . . . K 3 -30.397 -39.922 -13.88 0.3 129.23 ? C2' ATP 1442 E 1 HETATM 20 O O2' ATP . . . K 3 -29.066 -40.349 -14.019 0.3 128.11 ? O2' ATP 1442 E 1 HETATM 21 C C1' ATP . . . K 3 -30.461 -38.415 -13.646 0.3 132.13 ? C1' ATP 1442 E 1 HETATM 22 N N9 ATP . . . K 3 -31.302 -38.085 -12.476 0.3 129.69 ? N9 ATP 1442 E 1 HETATM 23 C C8 ATP . . . K 3 -32.577 -37.582 -12.486 0.3 129.59 ? C8 ATP 1442 E 1 HETATM 24 N N7 ATP . . . K 3 -32.98 -37.408 -11.201 0.3 130.72 ? N7 ATP 1442 E 1 HETATM 25 C C5 ATP . . . K 3 -31.983 -37.79 -10.372 0.3 128.07 ? C5 ATP 1442 E 1 HETATM 26 C C6 ATP . . . K 3 -31.86 -37.821 -8.987 0.3 128.75 ? C6 ATP 1442 E 1 HETATM 27 N N6 ATP . . . K 3 -32.829 -37.363 -8.195 0.3 125.92 ? N6 ATP 1442 E 1 HETATM 28 N N1 ATP . . . K 3 -30.683 -38.276 -8.432 0.3 129.49 ? N1 ATP 1442 E 1 HETATM 29 C C2 ATP . . . K 3 -29.64 -38.691 -9.234 0.3 127.35 ? C2 ATP 1442 E 1 HETATM 30 N N3 ATP . . . K 3 -29.774 -38.655 -10.602 0.3 132.82 ? N3 ATP 1442 E 1 HETATM 31 C C4 ATP . . . K 3 -30.924 -38.214 -11.164 0.3 130.07 ? C4 ATP 1442 E 1 # _model_server_stats.io_time_ms 64 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 49 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 31 #