data_1OJY # _model_server_result.job_id Yj1n1RYEuhETErbikImbRg _model_server_result.datetime_utc '2024-12-14 07:32:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ojy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":1256}' # _entry.id 1OJY # _exptl.entry_id 1OJY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 72.7 _cell.angle_beta 79.38 _cell.angle_gamma 81.7 _cell.entry_id 1OJY _cell.length_a 51.829 _cell.length_b 78.694 _cell.length_c 80.903 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1OJY _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS dimeric 2 author_and_software_defined_assembly 1 PQS dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,H,I,J,K,L,R,T 1 1 B,D,F,G,M,N,O,P,Q,S,U 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 I N N ? 3 L N N ? 3 O N N ? 3 P N N ? 3 Q N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 4 A CYS 4 1_555 A SG CYS 49 A CYS 49 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 A SG CYS 33 A CYS 33 1_555 A SG CYS 62 A CYS 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf3 A SG CYS 66 A CYS 66 1_555 A SG CYS 113 A CYS 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf4 A SG CYS 97 A CYS 97 1_555 A SG CYS 126 A CYS 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf5 A SG CYS 131 A CYS 131 1_555 A SG CYS 172 A CYS 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf6 A SG CYS 158 A CYS 158 1_555 A SG CYS 188 A CYS 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf7 A SG CYS 193 A CYS 193 1_555 A SG CYS 235 A CYS 235 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf8 A SG CYS 221 A CYS 221 1_555 A SG CYS 251 A CYS 251 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf9 B SG CYS 4 B CYS 4 1_555 B SG CYS 49 B CYS 49 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf10 B SG CYS 33 B CYS 33 1_555 B SG CYS 62 B CYS 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf11 B SG CYS 66 B CYS 66 1_555 B SG CYS 113 B CYS 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf12 B SG CYS 97 B CYS 97 1_555 B SG CYS 126 B CYS 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf13 B SG CYS 131 B CYS 131 1_555 B SG CYS 172 B CYS 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf14 B SG CYS 158 B CYS 158 1_555 B SG CYS 188 B CYS 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf15 B SG CYS 193 B CYS 193 1_555 B SG CYS 235 B CYS 235 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf16 B SG CYS 221 B CYS 221 1_555 B SG CYS 251 B CYS 251 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf17 C SG CYS 4 C CYS 4 1_555 C SG CYS 49 C CYS 49 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf18 C SG CYS 33 C CYS 33 1_555 C SG CYS 62 C CYS 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf19 C SG CYS 66 C CYS 66 1_555 C SG CYS 113 C CYS 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf20 C SG CYS 97 C CYS 97 1_555 C SG CYS 126 C CYS 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf21 C SG CYS 131 C CYS 131 1_555 C SG CYS 172 C CYS 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf22 C SG CYS 158 C CYS 158 1_555 C SG CYS 188 C CYS 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf23 C SG CYS 193 C CYS 193 1_555 C SG CYS 235 C CYS 235 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf24 C SG CYS 221 C CYS 221 1_555 C SG CYS 251 C CYS 251 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf25 D SG CYS 4 D CYS 4 1_555 D SG CYS 49 D CYS 49 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf26 D SG CYS 33 D CYS 33 1_555 D SG CYS 62 D CYS 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf27 D SG CYS 66 D CYS 66 1_555 D SG CYS 113 D CYS 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf28 D SG CYS 97 D CYS 97 1_555 D SG CYS 126 D CYS 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf29 D SG CYS 131 D CYS 131 1_555 D SG CYS 172 D CYS 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf30 D SG CYS 158 D CYS 158 1_555 D SG CYS 188 D CYS 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf31 D SG CYS 193 D CYS 193 1_555 D SG CYS 235 D CYS 235 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf32 D SG CYS 221 D CYS 221 1_555 D SG CYS 251 D CYS 251 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 135 n n C1 C2 GOL sing 136 n n C1 H11 GOL sing 137 n n C1 H12 GOL sing 138 n n O1 HO1 GOL sing 139 n n C2 O2 GOL sing 140 n n C2 C3 GOL sing 141 n n C2 H2 GOL sing 142 n n O2 HO2 GOL sing 143 n n C3 O3 GOL sing 144 n n C3 H31 GOL sing 145 n n C3 H32 GOL sing 146 n n O3 HO3 GOL sing 147 n n # _atom_sites.entry_id 1OJY _atom_sites.fract_transf_matrix[1][1] 0.019294 _atom_sites.fract_transf_matrix[1][2] -0.002815 _atom_sites.fract_transf_matrix[1][3] -0.002951 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012842 _atom_sites.fract_transf_matrix[2][3] -0.003722 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013093 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 ACT A 1 1254 1254 ACT ACT . F 2 ACT B 1 1255 1255 ACT ACT . G 3 GOL B 1 1256 1256 GOL GOL . H 4 SO4 C 1 1254 1254 SO4 SO4 . I 3 GOL C 1 1255 1255 GOL GOL . J 2 ACT C 1 1256 1256 ACT ACT . K 4 SO4 C 1 1257 1257 SO4 SO4 . L 3 GOL C 1 1258 1258 GOL GOL . M 4 SO4 D 1 1255 1255 SO4 SO4 . N 2 ACT D 1 1256 1256 ACT ACT . O 3 GOL D 1 1257 1257 GOL GOL . P 3 GOL D 1 1258 1258 GOL GOL . Q 3 GOL D 1 1259 1259 GOL GOL . R 5 HOH A 1 2001 2001 HOH HOH . R 5 HOH A 2 2002 2002 HOH HOH . R 5 HOH A 3 2003 2003 HOH HOH . R 5 HOH A 4 2004 2004 HOH HOH . R 5 HOH A 5 2005 2005 HOH HOH . R 5 HOH A 6 2006 2006 HOH HOH . R 5 HOH A 7 2007 2007 HOH HOH . R 5 HOH A 8 2008 2008 HOH HOH . R 5 HOH A 9 2009 2009 HOH HOH . R 5 HOH A 10 2010 2010 HOH HOH . R 5 HOH A 11 2011 2011 HOH HOH . R 5 HOH A 12 2012 2012 HOH HOH . R 5 HOH A 13 2013 2013 HOH HOH . R 5 HOH A 14 2014 2014 HOH HOH . R 5 HOH A 15 2015 2015 HOH HOH . R 5 HOH A 16 2016 2016 HOH HOH . R 5 HOH A 17 2017 2017 HOH HOH . R 5 HOH A 18 2018 2018 HOH HOH . R 5 HOH A 19 2019 2019 HOH HOH . R 5 HOH A 20 2020 2020 HOH HOH . R 5 HOH A 21 2021 2021 HOH HOH . R 5 HOH A 22 2022 2022 HOH HOH . R 5 HOH A 23 2023 2023 HOH HOH . R 5 HOH A 24 2024 2024 HOH HOH . R 5 HOH A 25 2025 2025 HOH HOH . S 5 HOH B 1 2001 2001 HOH HOH . S 5 HOH B 2 2002 2002 HOH HOH . S 5 HOH B 3 2003 2003 HOH HOH . S 5 HOH B 4 2004 2004 HOH HOH . S 5 HOH B 5 2005 2005 HOH HOH . S 5 HOH B 6 2006 2006 HOH HOH . S 5 HOH B 7 2007 2007 HOH HOH . S 5 HOH B 8 2008 2008 HOH HOH . S 5 HOH B 9 2009 2009 HOH HOH . S 5 HOH B 10 2010 2010 HOH HOH . S 5 HOH B 11 2011 2011 HOH HOH . S 5 HOH B 12 2012 2012 HOH HOH . S 5 HOH B 13 2013 2013 HOH HOH . S 5 HOH B 14 2014 2014 HOH HOH . S 5 HOH B 15 2015 2015 HOH HOH . S 5 HOH B 16 2016 2016 HOH HOH . S 5 HOH B 17 2017 2017 HOH HOH . S 5 HOH B 18 2018 2018 HOH HOH . S 5 HOH B 19 2019 2019 HOH HOH . S 5 HOH B 20 2020 2020 HOH HOH . S 5 HOH B 21 2021 2021 HOH HOH . S 5 HOH B 22 2022 2022 HOH HOH . S 5 HOH B 23 2023 2023 HOH HOH . S 5 HOH B 24 2024 2024 HOH HOH . S 5 HOH B 25 2025 2025 HOH HOH . S 5 HOH B 26 2026 2026 HOH HOH . S 5 HOH B 27 2027 2027 HOH HOH . S 5 HOH B 28 2028 2028 HOH HOH . S 5 HOH B 29 2029 2029 HOH HOH . S 5 HOH B 30 2030 2030 HOH HOH . S 5 HOH B 31 2031 2031 HOH HOH . S 5 HOH B 32 2032 2032 HOH HOH . S 5 HOH B 33 2033 2033 HOH HOH . S 5 HOH B 34 2034 2034 HOH HOH . S 5 HOH B 35 2035 2035 HOH HOH . S 5 HOH B 36 2036 2036 HOH HOH . S 5 HOH B 37 2037 2037 HOH HOH . S 5 HOH B 38 2038 2038 HOH HOH . S 5 HOH B 39 2039 2039 HOH HOH . S 5 HOH B 40 2040 2040 HOH HOH . T 5 HOH C 1 2001 2001 HOH HOH . T 5 HOH C 2 2002 2002 HOH HOH . T 5 HOH C 3 2003 2003 HOH HOH . T 5 HOH C 4 2004 2004 HOH HOH . T 5 HOH C 5 2005 2005 HOH HOH . T 5 HOH C 6 2006 2006 HOH HOH . T 5 HOH C 7 2007 2007 HOH HOH . T 5 HOH C 8 2008 2008 HOH HOH . T 5 HOH C 9 2009 2009 HOH HOH . T 5 HOH C 10 2010 2010 HOH HOH . T 5 HOH C 11 2011 2011 HOH HOH . T 5 HOH C 12 2012 2012 HOH HOH . T 5 HOH C 13 2013 2013 HOH HOH . T 5 HOH C 14 2014 2014 HOH HOH . T 5 HOH C 15 2015 2015 HOH HOH . T 5 HOH C 16 2016 2016 HOH HOH . T 5 HOH C 17 2017 2017 HOH HOH . T 5 HOH C 18 2018 2018 HOH HOH . T 5 HOH C 19 2019 2019 HOH HOH . T 5 HOH C 20 2020 2020 HOH HOH . T 5 HOH C 21 2021 2021 HOH HOH . T 5 HOH C 22 2022 2022 HOH HOH . T 5 HOH C 23 2023 2023 HOH HOH . T 5 HOH C 24 2024 2024 HOH HOH . T 5 HOH C 25 2025 2025 HOH HOH . T 5 HOH C 26 2026 2026 HOH HOH . T 5 HOH C 27 2027 2027 HOH HOH . T 5 HOH C 28 2028 2028 HOH HOH . T 5 HOH C 29 2029 2029 HOH HOH . T 5 HOH C 30 2030 2030 HOH HOH . T 5 HOH C 31 2031 2031 HOH HOH . T 5 HOH C 32 2032 2032 HOH HOH . T 5 HOH C 33 2033 2033 HOH HOH . T 5 HOH C 34 2034 2034 HOH HOH . T 5 HOH C 35 2035 2035 HOH HOH . T 5 HOH C 36 2036 2036 HOH HOH . U 5 HOH D 1 2001 2001 HOH HOH . U 5 HOH D 2 2002 2002 HOH HOH . U 5 HOH D 3 2003 2003 HOH HOH . U 5 HOH D 4 2004 2004 HOH HOH . U 5 HOH D 5 2005 2005 HOH HOH . U 5 HOH D 6 2006 2006 HOH HOH . U 5 HOH D 7 2007 2007 HOH HOH . U 5 HOH D 8 2008 2008 HOH HOH . U 5 HOH D 9 2009 2009 HOH HOH . U 5 HOH D 10 2010 2010 HOH HOH . U 5 HOH D 11 2011 2011 HOH HOH . U 5 HOH D 12 2012 2012 HOH HOH . U 5 HOH D 13 2013 2013 HOH HOH . U 5 HOH D 14 2014 2014 HOH HOH . U 5 HOH D 15 2015 2015 HOH HOH . U 5 HOH D 16 2016 2016 HOH HOH . U 5 HOH D 17 2017 2017 HOH HOH . U 5 HOH D 18 2018 2018 HOH HOH . U 5 HOH D 19 2019 2019 HOH HOH . U 5 HOH D 20 2020 2020 HOH HOH . U 5 HOH D 21 2021 2021 HOH HOH . U 5 HOH D 22 2022 2022 HOH HOH . U 5 HOH D 23 2023 2023 HOH HOH . U 5 HOH D 24 2024 2024 HOH HOH . U 5 HOH D 25 2025 2025 HOH HOH . U 5 HOH D 26 2026 2026 HOH HOH . U 5 HOH D 27 2027 2027 HOH HOH . U 5 HOH D 28 2028 2028 HOH HOH . U 5 HOH D 29 2029 2029 HOH HOH . U 5 HOH D 30 2030 2030 HOH HOH . U 5 HOH D 31 2031 2031 HOH HOH . U 5 HOH D 32 2032 2032 HOH HOH . U 5 HOH D 33 2033 2033 HOH HOH . U 5 HOH D 34 2034 2034 HOH HOH . U 5 HOH D 35 2035 2035 HOH HOH . U 5 HOH D 36 2036 2036 HOH HOH . U 5 HOH D 37 2037 2037 HOH HOH . U 5 HOH D 38 2038 2038 HOH HOH . U 5 HOH D 39 2039 2039 HOH HOH . U 5 HOH D 40 2040 2040 HOH HOH . U 5 HOH D 41 2041 2041 HOH HOH . U 5 HOH D 42 2042 2042 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . G 3 17.84 35.827 57.253 1 49.96 ? C1 GOL 1256 B 1 HETATM 2 O O1 GOL . . . G 3 17.042 34.879 56.213 1 50.15 ? O1 GOL 1256 B 1 HETATM 3 C C2 GOL . . . G 3 19.194 36.19 57.174 1 49.53 ? C2 GOL 1256 B 1 HETATM 4 O O2 GOL . . . G 3 19.46 36.783 55.99 1 49.21 ? O2 GOL 1256 B 1 HETATM 5 C C3 GOL . . . G 3 19.659 36.168 58.292 1 49.38 ? C3 GOL 1256 B 1 HETATM 6 O O3 GOL . . . G 3 19.741 36.064 59.853 1 49.3 ? O3 GOL 1256 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #