data_1OKC # _model_server_result.job_id yPtKtScIN9oAu5fg641lRw _model_server_result.datetime_utc '2024-11-23 13:49:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1okc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 1OKC # _exptl.entry_id 1OKC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 770.816 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description Carboxyatractyloside _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1OKC _cell.length_a 85.437 _cell.length_b 83.463 _cell.length_c 49.922 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1OKC _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C31 H46 O18 S2' _chem_comp.formula_weight 770.816 _chem_comp.id CXT _chem_comp.mon_nstd_flag . _chem_comp.name Carboxyatractyloside _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 CXT sing 325 n n O2 C1 CXT sing 326 n n C1 C2 CXT sing 327 n n C1 H1 CXT sing 328 n n O1 C5 CXT sing 329 n n O4 S1 CXT sing 330 n n S1 O7 CXT doub 331 n n S1 O6 CXT doub 332 n n S1 O8 CXT sing 333 n n C2 C3 CXT sing 334 n n C2 O3 CXT sing 335 n n C2 H2 CXT sing 336 n n O2 C22 CXT sing 337 n n O11 S2 CXT doub 338 n n O9 S2 CXT doub 339 n n S2 O5 CXT sing 340 n n S2 O10 CXT sing 341 n n C4 C3 CXT sing 342 n n C3 O4 CXT sing 343 n n C3 H3 CXT sing 344 n n O3 C7 CXT sing 345 n n C5 C4 CXT sing 346 n n C4 O5 CXT sing 347 n n C4 H4 CXT sing 348 n n C6 C5 CXT sing 349 n n C5 H5 CXT sing 350 n n O12 C6 CXT sing 351 n n C6 H6 CXT sing 352 n n C6 H6A CXT sing 353 n n O13 C7 CXT doub 354 n n C7 C8 CXT sing 355 n n C9 C8 CXT sing 356 n n C8 H8 CXT sing 357 n n C8 H8A CXT sing 358 n n O8 HO8 CXT sing 359 n n C11 C9 CXT sing 360 n n C9 C10 CXT sing 361 n n C9 H9 CXT sing 362 n n C10 H10 CXT sing 363 n n C10 H10A CXT sing 364 n n C10 H10B CXT sing 365 n n O10 HO10 CXT sing 366 n n C11 H11 CXT sing 367 n n C11 H11A CXT sing 368 n n C11 H11B CXT sing 369 n n O12 HO12 CXT sing 370 n n C30 C21 CXT sing 371 n n C21 C22 CXT sing 372 n n C21 H21 CXT sing 373 n n C21 H21A CXT sing 374 n n C35 O21 CXT sing 375 n n O21 HO21 CXT sing 376 n n C22 C23 CXT sing 377 n n C22 H22 CXT sing 378 n n C37 O22 CXT sing 379 n n O22 HO22 CXT sing 380 n n C23 C24 CXT sing 381 n n C23 H23 CXT sing 382 n n C23 H23A CXT sing 383 n n O23 C37 CXT doub 384 n n C25 C24 CXT sing 385 n n C24 C37 CXT sing 386 n n C24 C38 CXT sing 387 n n C38 O24 CXT sing 388 n n O24 HO24 CXT sing 389 n n C30 C25 CXT sing 390 n n C25 C26 CXT sing 391 n n C25 H25 CXT sing 392 n n C38 O25 CXT doub 393 n n C27 C26 CXT sing 394 n n C26 H26 CXT sing 395 n n C26 H26A CXT sing 396 n n C28 C27 CXT sing 397 n n C27 H27 CXT sing 398 n n C27 H27A CXT sing 399 n n C34 C28 CXT sing 400 n n C35 C28 CXT sing 401 n n C29 C28 CXT sing 402 n n C31 C29 CXT sing 403 n n C29 C30 CXT sing 404 n n C29 H29 CXT sing 405 n n C39 C30 CXT sing 406 n n C32 C31 CXT sing 407 n n C31 H31 CXT sing 408 n n C31 H31A CXT sing 409 n n C32 C33 CXT sing 410 n n C32 H32 CXT sing 411 n n C32 H32A CXT sing 412 n n C33 C36 CXT sing 413 n n C33 C34 CXT sing 414 n n C33 H33 CXT sing 415 n n C34 H34 CXT sing 416 n n C34 H34A CXT sing 417 n n C36 C35 CXT sing 418 n n C35 H35 CXT sing 419 n n C40 C36 CXT doub 420 n n C39 H39 CXT sing 421 n n C39 H39A CXT sing 422 n n C39 H39B CXT sing 423 n n C40 H40 CXT sing 424 n n C40 H40A CXT sing 425 n n # _atom_sites.entry_id 1OKC _atom_sites.fract_transf_matrix[1][1] 0.011705 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011981 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020031 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CXT A 1 401 401 CXT CXT . C 3 CDL A 1 800 800 CDL CDL . D 3 CDL A 1 801 801 CDL CDL . E 3 CDL A 1 802 802 CDL CDL . F 4 LDM A 1 903 903 LDM LDM . G 4 LDM A 1 904 904 LDM LDM . H 5 PC1 A 1 980 980 PC1 PC1 . I 5 PC1 A 1 981 981 PC1 PC1 . J 5 PC1 A 1 982 982 PC1 PC1 . K 5 PC1 A 1 983 983 PC1 PC1 . L 6 HOH A 1 2001 2001 HOH HOH . L 6 HOH A 2 2002 2002 HOH HOH . L 6 HOH A 3 2003 2003 HOH HOH . L 6 HOH A 4 2004 2004 HOH HOH . L 6 HOH A 5 2005 2005 HOH HOH . L 6 HOH A 6 2006 2006 HOH HOH . L 6 HOH A 7 2007 2007 HOH HOH . L 6 HOH A 8 2008 2008 HOH HOH . L 6 HOH A 9 2009 2009 HOH HOH . L 6 HOH A 10 2010 2010 HOH HOH . L 6 HOH A 11 2011 2011 HOH HOH . L 6 HOH A 12 2012 2012 HOH HOH . L 6 HOH A 13 2013 2013 HOH HOH . L 6 HOH A 14 2014 2014 HOH HOH . L 6 HOH A 15 2015 2015 HOH HOH . L 6 HOH A 16 2016 2016 HOH HOH . L 6 HOH A 17 2017 2017 HOH HOH . L 6 HOH A 18 2018 2018 HOH HOH . L 6 HOH A 19 2019 2019 HOH HOH . L 6 HOH A 20 2020 2020 HOH HOH . L 6 HOH A 21 2021 2021 HOH HOH . L 6 HOH A 22 2022 2022 HOH HOH . L 6 HOH A 23 2023 2023 HOH HOH . L 6 HOH A 24 2024 2024 HOH HOH . L 6 HOH A 25 2025 2025 HOH HOH . L 6 HOH A 26 2026 2026 HOH HOH . L 6 HOH A 27 2027 2027 HOH HOH . L 6 HOH A 28 2028 2028 HOH HOH . L 6 HOH A 29 2029 2029 HOH HOH . L 6 HOH A 30 2030 2030 HOH HOH . L 6 HOH A 31 2031 2031 HOH HOH . L 6 HOH A 32 2032 2032 HOH HOH . L 6 HOH A 33 2033 2033 HOH HOH . L 6 HOH A 34 2034 2034 HOH HOH . L 6 HOH A 35 2035 2035 HOH HOH . L 6 HOH A 36 2036 2036 HOH HOH . L 6 HOH A 37 2037 2037 HOH HOH . L 6 HOH A 38 2038 2038 HOH HOH . L 6 HOH A 39 2039 2039 HOH HOH . L 6 HOH A 40 2040 2040 HOH HOH . L 6 HOH A 41 2041 2041 HOH HOH . L 6 HOH A 42 2042 2042 HOH HOH . L 6 HOH A 43 2043 2043 HOH HOH . L 6 HOH A 44 2044 2044 HOH HOH . L 6 HOH A 45 2045 2045 HOH HOH . L 6 HOH A 46 2046 2046 HOH HOH . L 6 HOH A 47 2047 2047 HOH HOH . L 6 HOH A 48 2048 2048 HOH HOH . L 6 HOH A 49 2049 2049 HOH HOH . L 6 HOH A 50 2050 2050 HOH HOH . L 6 HOH A 51 2051 2051 HOH HOH . L 6 HOH A 52 2052 2052 HOH HOH . L 6 HOH A 53 2053 2053 HOH HOH . L 6 HOH A 54 2054 2054 HOH HOH . L 6 HOH A 55 2055 2055 HOH HOH . L 6 HOH A 56 2056 2056 HOH HOH . L 6 HOH A 57 2057 2057 HOH HOH . L 6 HOH A 58 2058 2058 HOH HOH . L 6 HOH A 59 2059 2059 HOH HOH . L 6 HOH A 60 2060 2060 HOH HOH . L 6 HOH A 61 2061 2061 HOH HOH . L 6 HOH A 62 2062 2062 HOH HOH . L 6 HOH A 63 2063 2063 HOH HOH . L 6 HOH A 64 2064 2064 HOH HOH . L 6 HOH A 65 2065 2065 HOH HOH . L 6 HOH A 66 2066 2066 HOH HOH . L 6 HOH A 67 2067 2067 HOH HOH . L 6 HOH A 68 2068 2068 HOH HOH . L 6 HOH A 69 2069 2069 HOH HOH . L 6 HOH A 70 2070 2070 HOH HOH . L 6 HOH A 71 2071 2071 HOH HOH . L 6 HOH A 72 2072 2072 HOH HOH . L 6 HOH A 73 2073 2073 HOH HOH . L 6 HOH A 74 2074 2074 HOH HOH . L 6 HOH A 75 2075 2075 HOH HOH . L 6 HOH A 76 2076 2076 HOH HOH . L 6 HOH A 77 2077 2077 HOH HOH . L 6 HOH A 78 2078 2078 HOH HOH . L 6 HOH A 79 2079 2079 HOH HOH . L 6 HOH A 80 2080 2080 HOH HOH . L 6 HOH A 81 2081 2081 HOH HOH . L 6 HOH A 82 2082 2082 HOH HOH . L 6 HOH A 83 2083 2083 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CXT . . . B 2 18.667 22.464 28.84 1 36.48 ? C1 CXT 401 A 1 HETATM 2 O O1 CXT . . . B 2 17.518 21.994 29.649 1 39.77 ? O1 CXT 401 A 1 HETATM 3 S S1 CXT . . . B 2 22.34 23.308 32.082 1 45.66 ? S1 CXT 401 A 1 HETATM 4 C C2 CXT . . . B 2 19.769 23.038 29.702 1 37.03 ? C2 CXT 401 A 1 HETATM 5 O O2 CXT . . . B 2 19.029 21.412 28.151 1 39.26 ? O2 CXT 401 A 1 HETATM 6 S S2 CXT . . . B 2 18.634 22.54 34.367 1 36.1 ? S2 CXT 401 A 1 HETATM 7 C C3 CXT . . . B 2 19.996 22.428 31.049 1 38.61 ? C3 CXT 401 A 1 HETATM 8 O O3 CXT . . . B 2 21.057 23.014 29.095 1 36.57 ? O3 CXT 401 A 1 HETATM 9 C C4 CXT . . . B 2 18.657 22.323 31.784 1 38.11 ? C4 CXT 401 A 1 HETATM 10 O O4 CXT . . . B 2 20.824 23.318 31.743 1 41.28 ? O4 CXT 401 A 1 HETATM 11 C C5 CXT . . . B 2 17.768 21.355 30.945 1 38.81 ? C5 CXT 401 A 1 HETATM 12 O O5 CXT . . . B 2 18.967 21.75 33.047 1 36.05 ? O5 CXT 401 A 1 HETATM 13 C C6 CXT . . . B 2 16.356 21.066 31.413 1 41.76 ? C6 CXT 401 A 1 HETATM 14 O O6 CXT . . . B 2 23.149 23.851 31.008 1 41.53 ? O6 CXT 401 A 1 HETATM 15 C C7 CXT . . . B 2 21.404 24.262 28.301 1 34.9 ? C7 CXT 401 A 1 HETATM 16 O O7 CXT . . . B 2 22.298 24.04 33.28 1 45.97 ? O7 CXT 401 A 1 HETATM 17 C C8 CXT . . . B 2 22.49 23.673 27.384 1 37 ? C8 CXT 401 A 1 HETATM 18 O O8 CXT . . . B 2 22.707 21.973 32.25 1 46.02 ? O8 CXT 401 A 1 HETATM 19 C C9 CXT . . . B 2 23.217 24.572 26.286 1 36.85 ? C9 CXT 401 A 1 HETATM 20 O O9 CXT . . . B 2 19.147 21.539 35.265 1 37.19 ? O9 CXT 401 A 1 HETATM 21 C C10 CXT . . . B 2 24.283 23.865 25.482 1 36.61 ? C10 CXT 401 A 1 HETATM 22 O O10 CXT . . . B 2 17.167 22.694 34.437 1 32.55 ? O10 CXT 401 A 1 HETATM 23 C C11 CXT . . . B 2 22.14 25.039 25.344 1 40.27 ? C11 CXT 401 A 1 HETATM 24 O O11 CXT . . . B 2 19.344 23.826 34.431 1 34.41 ? O11 CXT 401 A 1 HETATM 25 O O12 CXT . . . B 2 15.318 22.026 31.508 1 45.13 ? O12 CXT 401 A 1 HETATM 26 O O13 CXT . . . B 2 20.995 25.316 28.349 1 35.83 ? O13 CXT 401 A 1 HETATM 27 C C21 CXT . . . B 2 17.627 22.113 25.627 1 29.08 ? C21 CXT 401 A 1 HETATM 28 O O21 CXT . . . B 2 17.474 22.517 19.335 1 24.9 ? O21 CXT 401 A 1 HETATM 29 C C22 CXT . . . B 2 18.461 21.449 26.76 1 31.12 ? C22 CXT 401 A 1 HETATM 30 O O22 CXT . . . B 2 21.84 19.99 23.591 1 35.17 ? O22 CXT 401 A 1 HETATM 31 C C23 CXT . . . B 2 19.852 20.925 26.277 1 29 ? C23 CXT 401 A 1 HETATM 32 O O23 CXT . . . B 2 22.096 18.876 25.451 1 33.67 ? O23 CXT 401 A 1 HETATM 33 C C24 CXT . . . B 2 19.826 19.921 25.082 1 29.99 ? C24 CXT 401 A 1 HETATM 34 O O24 CXT . . . B 2 18.901 18.232 26.624 1 30.69 ? O24 CXT 401 A 1 HETATM 35 C C25 CXT . . . B 2 19.082 20.824 23.879 1 26.51 ? C25 CXT 401 A 1 HETATM 36 O O25 CXT . . . B 2 19.187 17.573 24.57 1 25 ? O25 CXT 401 A 1 HETATM 37 C C26 CXT . . . B 2 18.964 19.985 22.505 1 23.22 ? C26 CXT 401 A 1 HETATM 38 C C27 CXT . . . B 2 18.552 20.978 21.333 1 24.34 ? C27 CXT 401 A 1 HETATM 39 C C28 CXT . . . B 2 17.14 21.602 21.522 1 22.83 ? C28 CXT 401 A 1 HETATM 40 C C29 CXT . . . B 2 17.004 22.206 23.088 1 23.64 ? C29 CXT 401 A 1 HETATM 41 C C30 CXT . . . B 2 17.511 21.283 24.276 1 25.4 ? C30 CXT 401 A 1 HETATM 42 C C31 CXT . . . B 2 15.487 22.787 23.304 1 21.8 ? C31 CXT 401 A 1 HETATM 43 C C32 CXT . . . B 2 14.346 22.026 22.543 1 22.04 ? C32 CXT 401 A 1 HETATM 44 C C33 CXT . . . B 2 14.814 21.614 21.102 1 22.75 ? C33 CXT 401 A 1 HETATM 45 C C34 CXT . . . B 2 16.014 20.618 21.208 1 21.61 ? C34 CXT 401 A 1 HETATM 46 C C35 CXT . . . B 2 16.893 22.838 20.475 1 23.17 ? C35 CXT 401 A 1 HETATM 47 C C36 CXT . . . B 2 15.378 22.777 20.272 1 21.6 ? C36 CXT 401 A 1 HETATM 48 C C37 CXT . . . B 2 21.341 19.536 24.749 1 30.44 ? C37 CXT 401 A 1 HETATM 49 C C38 CXT . . . B 2 19.275 18.454 25.393 1 28.31 ? C38 CXT 401 A 1 HETATM 50 C C39 CXT . . . B 2 16.453 20.107 24.647 1 22.14 ? C39 CXT 401 A 1 HETATM 51 C C40 CXT . . . B 2 14.609 23.668 19.45 1 25.1 ? C40 CXT 401 A 1 # _model_server_stats.io_time_ms 36 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 25 _model_server_stats.element_count 51 #