data_1OKE # _model_server_result.job_id hcHCj_rIAIc_W5b1XhEl3A _model_server_result.datetime_utc '2024-10-17 10:26:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1oke # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1395}' # _entry.id 1OKE # _exptl.entry_id 1OKE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1OKE _cell.length_a 81.602 _cell.length_b 81.602 _cell.length_c 287.408 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1OKE _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 G N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 2 4 1 FUL NAG C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C NAG 1 C 1 NAG A 1396 NAG 2 n C NAG 2 C 2 NAG A 1397 NAG 2 n C BMA 3 C 3 BMA A 1399 BMA 2 n C FUL 4 C 4 FUL A 1398 FUL 2 n D NAG 1 D 1 NAG B 1396 NAG 2 n D NAG 2 D 2 NAG B 1397 NAG 2 n D BMA 3 D 3 BMA B 1399 BMA 2 n D FUL 4 D 4 FUL B 1398 FUL # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 3 A CYS 3 1_555 A SG CYS 30 A CYS 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf2 A SG CYS 60 A CYS 60 1_555 A SG CYS 121 A CYS 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? disulf ? disulf3 A SG CYS 74 A CYS 74 1_555 A SG CYS 105 A CYS 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf4 A SG CYS 92 A CYS 92 1_555 A SG CYS 116 A CYS 116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf5 A SG CYS 185 A CYS 185 1_555 A SG CYS 285 A CYS 285 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf6 A SG CYS 302 A CYS 302 1_555 A SG CYS 333 A CYS 333 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf7 B SG CYS 3 B CYS 3 1_555 B SG CYS 30 B CYS 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf8 B SG CYS 60 B CYS 60 1_555 B SG CYS 121 B CYS 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? disulf ? disulf9 B SG CYS 74 B CYS 74 1_555 B SG CYS 105 B CYS 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? disulf ? disulf10 B SG CYS 92 B CYS 92 1_555 B SG CYS 116 B CYS 116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? disulf ? disulf11 B SG CYS 185 B CYS 185 1_555 B SG CYS 285 B CYS 285 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? disulf ? disulf12 B SG CYS 302 B CYS 302 1_555 B SG CYS 333 B CYS 333 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? covale ? covale1 A ND2 ASN 67 A ASN 67 1_555 E C1 NAG . A NAG 1395 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale2 A ND2 ASN 153 A ASN 153 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? covale ? covale3 B ND2 ASN 67 B ASN 67 1_555 G C1 NAG . B NAG 1395 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? covale ? covale4 B ND2 ASN 153 B ASN 153 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 ? covale ? covale5 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.405 ? covale ? covale6 C O6 NAG . C NAG 1 1_555 C C1 FUL . C FUL 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.403 ? covale ? covale7 C O4 NAG . C NAG 2 1_555 C C1 BMA . C BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.414 ? covale ? covale8 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.406 ? covale ? covale9 D O6 NAG . D NAG 1 1_555 D C1 FUL . D FUL 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.395 ? covale ? covale10 D O4 NAG . D NAG 2 1_555 D C1 BMA . D BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.415 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms ? # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 1OKE _atom_sites.fract_transf_matrix[1][1] 0.012255 _atom_sites.fract_transf_matrix[1][2] 0.007075 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01415 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003479 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 NAG A 1 1395 1395 NAG NAG . F 4 BOG A 1 1400 1400 BOG BOG . G 3 NAG B 1 1395 1395 NAG NAG . H 4 BOG B 1 1400 1400 BOG BOG . I 5 HOH A 1 2001 2001 HOH HOH . I 5 HOH A 2 2002 2002 HOH HOH . I 5 HOH A 3 2003 2003 HOH HOH . I 5 HOH A 4 2004 2004 HOH HOH . I 5 HOH A 5 2005 2005 HOH HOH . I 5 HOH A 6 2006 2006 HOH HOH . I 5 HOH A 7 2007 2007 HOH HOH . I 5 HOH A 8 2008 2008 HOH HOH . I 5 HOH A 9 2009 2009 HOH HOH . I 5 HOH A 10 2010 2010 HOH HOH . I 5 HOH A 11 2011 2011 HOH HOH . I 5 HOH A 12 2012 2012 HOH HOH . I 5 HOH A 13 2013 2013 HOH HOH . I 5 HOH A 14 2014 2014 HOH HOH . I 5 HOH A 15 2015 2015 HOH HOH . I 5 HOH A 16 2016 2016 HOH HOH . I 5 HOH A 17 2017 2017 HOH HOH . I 5 HOH A 18 2018 2018 HOH HOH . I 5 HOH A 19 2019 2019 HOH HOH . I 5 HOH A 20 2020 2020 HOH HOH . I 5 HOH A 21 2021 2021 HOH HOH . I 5 HOH A 22 2022 2022 HOH HOH . I 5 HOH A 23 2023 2023 HOH HOH . I 5 HOH A 24 2024 2024 HOH HOH . I 5 HOH A 25 2025 2025 HOH HOH . I 5 HOH A 26 2026 2026 HOH HOH . I 5 HOH A 27 2027 2027 HOH HOH . I 5 HOH A 28 2028 2028 HOH HOH . I 5 HOH A 29 2029 2029 HOH HOH . I 5 HOH A 30 2030 2030 HOH HOH . I 5 HOH A 31 2031 2031 HOH HOH . I 5 HOH A 32 2032 2032 HOH HOH . I 5 HOH A 33 2033 2033 HOH HOH . I 5 HOH A 34 2034 2034 HOH HOH . I 5 HOH A 35 2035 2035 HOH HOH . I 5 HOH A 36 2036 2036 HOH HOH . I 5 HOH A 37 2037 2037 HOH HOH . I 5 HOH A 38 2038 2038 HOH HOH . I 5 HOH A 39 2039 2039 HOH HOH . I 5 HOH A 40 2040 2040 HOH HOH . I 5 HOH A 41 2041 2041 HOH HOH . I 5 HOH A 42 2042 2042 HOH HOH . I 5 HOH A 43 2043 2043 HOH HOH . I 5 HOH A 44 2044 2044 HOH HOH . I 5 HOH A 45 2045 2045 HOH HOH . I 5 HOH A 46 2046 2046 HOH HOH . I 5 HOH A 47 2047 2047 HOH HOH . I 5 HOH A 48 2048 2048 HOH HOH . I 5 HOH A 49 2049 2049 HOH HOH . J 5 HOH B 1 2001 2001 HOH HOH . J 5 HOH B 2 2002 2002 HOH HOH . J 5 HOH B 3 2003 2003 HOH HOH . J 5 HOH B 4 2004 2004 HOH HOH . J 5 HOH B 5 2005 2005 HOH HOH . J 5 HOH B 6 2006 2006 HOH HOH . J 5 HOH B 7 2007 2007 HOH HOH . J 5 HOH B 8 2008 2008 HOH HOH . J 5 HOH B 9 2009 2009 HOH HOH . J 5 HOH B 10 2010 2010 HOH HOH . J 5 HOH B 11 2011 2011 HOH HOH . J 5 HOH B 12 2012 2012 HOH HOH . J 5 HOH B 13 2013 2013 HOH HOH . J 5 HOH B 14 2014 2014 HOH HOH . J 5 HOH B 15 2015 2015 HOH HOH . J 5 HOH B 16 2016 2016 HOH HOH . J 5 HOH B 17 2017 2017 HOH HOH . J 5 HOH B 18 2018 2018 HOH HOH . J 5 HOH B 19 2019 2019 HOH HOH . J 5 HOH B 20 2020 2020 HOH HOH . J 5 HOH B 21 2021 2021 HOH HOH . J 5 HOH B 22 2022 2022 HOH HOH . J 5 HOH B 23 2023 2023 HOH HOH . J 5 HOH B 24 2024 2024 HOH HOH . J 5 HOH B 25 2025 2025 HOH HOH . J 5 HOH B 26 2026 2026 HOH HOH . J 5 HOH B 27 2027 2027 HOH HOH . J 5 HOH B 28 2028 2028 HOH HOH . J 5 HOH B 29 2029 2029 HOH HOH . J 5 HOH B 30 2030 2030 HOH HOH . J 5 HOH B 31 2031 2031 HOH HOH . J 5 HOH B 32 2032 2032 HOH HOH . J 5 HOH B 33 2033 2033 HOH HOH . J 5 HOH B 34 2034 2034 HOH HOH . J 5 HOH B 35 2035 2035 HOH HOH . J 5 HOH B 36 2036 2036 HOH HOH . J 5 HOH B 37 2037 2037 HOH HOH . J 5 HOH B 38 2038 2038 HOH HOH . J 5 HOH B 39 2039 2039 HOH HOH . J 5 HOH B 40 2040 2040 HOH HOH . J 5 HOH B 41 2041 2041 HOH HOH . J 5 HOH B 42 2042 2042 HOH HOH . J 5 HOH B 43 2043 2043 HOH HOH . J 5 HOH B 44 2044 2044 HOH HOH . J 5 HOH B 45 2045 2045 HOH HOH . J 5 HOH B 46 2046 2046 HOH HOH . J 5 HOH B 47 2047 2047 HOH HOH . J 5 HOH B 48 2048 2048 HOH HOH . J 5 HOH B 49 2049 2049 HOH HOH . J 5 HOH B 50 2050 2050 HOH HOH . J 5 HOH B 51 2051 2051 HOH HOH . J 5 HOH B 52 2052 2052 HOH HOH . J 5 HOH B 53 2053 2053 HOH HOH . J 5 HOH B 54 2054 2054 HOH HOH . J 5 HOH B 55 2055 2055 HOH HOH . J 5 HOH B 56 2056 2056 HOH HOH . J 5 HOH B 57 2057 2057 HOH HOH . J 5 HOH B 58 2058 2058 HOH HOH . J 5 HOH B 59 2059 2059 HOH HOH . J 5 HOH B 60 2060 2060 HOH HOH . J 5 HOH B 61 2061 2061 HOH HOH . J 5 HOH B 62 2062 2062 HOH HOH . J 5 HOH B 63 2063 2063 HOH HOH . J 5 HOH B 64 2064 2064 HOH HOH . J 5 HOH B 65 2065 2065 HOH HOH . J 5 HOH B 66 2066 2066 HOH HOH . J 5 HOH B 67 2067 2067 HOH HOH . J 5 HOH B 68 2068 2068 HOH HOH . J 5 HOH B 69 2069 2069 HOH HOH . J 5 HOH B 70 2070 2070 HOH HOH . J 5 HOH B 71 2071 2071 HOH HOH . J 5 HOH B 72 2072 2072 HOH HOH . J 5 HOH B 73 2073 2073 HOH HOH . J 5 HOH B 74 2074 2074 HOH HOH . J 5 HOH B 75 2075 2075 HOH HOH . J 5 HOH B 76 2076 2076 HOH HOH . J 5 HOH B 77 2077 2077 HOH HOH . J 5 HOH B 78 2078 2078 HOH HOH . J 5 HOH B 79 2079 2079 HOH HOH . J 5 HOH B 80 2080 2080 HOH HOH . J 5 HOH B 81 2081 2081 HOH HOH . J 5 HOH B 82 2082 2082 HOH HOH . J 5 HOH B 83 2083 2083 HOH HOH . J 5 HOH B 84 2084 2084 HOH HOH . J 5 HOH B 85 2085 2085 HOH HOH . J 5 HOH B 86 2086 2086 HOH HOH . J 5 HOH B 87 2087 2087 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . E 3 -29.386 85.059 11.039 1 101.97 ? C1 NAG 1395 A 1 HETATM 2 C C2 NAG . . . E 3 -29.694 86.575 11.015 1 104.77 ? C2 NAG 1395 A 1 HETATM 3 C C3 NAG . . . E 3 -31.087 86.898 11.587 1 107.5 ? C3 NAG 1395 A 1 HETATM 4 C C4 NAG . . . E 3 -32.161 85.968 11.019 1 110.51 ? C4 NAG 1395 A 1 HETATM 5 C C5 NAG . . . E 3 -31.72 84.514 11.198 1 108.11 ? C5 NAG 1395 A 1 HETATM 6 C C6 NAG . . . E 3 -32.735 83.509 10.672 1 100.49 ? C6 NAG 1395 A 1 HETATM 7 C C7 NAG . . . E 3 -27.977 88.261 11.272 1 115.49 ? C7 NAG 1395 A 1 HETATM 8 C C8 NAG . . . E 3 -27.445 89.32 12.23 1 115.22 ? C8 NAG 1395 A 1 HETATM 9 N N2 NAG . . . E 3 -28.69 87.269 11.801 1 109.82 ? N2 NAG 1395 A 1 HETATM 10 O O3 NAG . . . E 3 -31.427 88.239 11.272 1 108 ? O3 NAG 1395 A 1 HETATM 11 O O4 NAG . . . E 3 -33.395 86.19 11.69 1 112.09 ? O4 NAG 1395 A 1 HETATM 12 O O5 NAG . . . E 3 -30.477 84.297 10.494 1 105.73 ? O5 NAG 1395 A 1 HETATM 13 O O6 NAG . . . E 3 -32.546 83.25 9.287 1 96.75 ? O6 NAG 1395 A 1 HETATM 14 O O7 NAG . . . E 3 -27.737 88.349 10.063 1 117.77 ? O7 NAG 1395 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #