data_1OKY # _model_server_result.job_id TXHl3Hx3DHT8C-nwQGd61w _model_server_result.datetime_utc '2024-11-30 07:38:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1oky # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":1368}' # _entry.id 1OKY # _exptl.entry_id 1OKY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 466.531 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description STAUROSPORINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1OKY _cell.length_a 124.172 _cell.length_b 124.172 _cell.length_c 47.314 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1OKY _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id J _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ASN 190 A ASN 240 1_555 A N SEP 191 A SEP 241 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 A C SEP 191 A SEP 241 1_555 A N PHE 192 A PHE 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? # _chem_comp.formula 'C28 H26 N4 O3' _chem_comp.formula_weight 466.531 _chem_comp.id STU _chem_comp.mon_nstd_flag . _chem_comp.name STAUROSPORINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O4 C25 STU sing 325 n n O4 C21 STU sing 326 n n C25 C24 STU sing 327 n n C25 N3 STU sing 328 n n C25 H25 STU sing 329 n n C24 C23 STU sing 330 n n C24 H241 STU sing 331 n n C24 H242 STU sing 332 n n C23 C22 STU sing 333 n n C23 N4 STU sing 334 n n C23 H23 STU sing 335 n n C22 C21 STU sing 336 n n C22 O6 STU sing 337 n n C22 H22 STU sing 338 n n C21 C26 STU sing 339 n n C21 N2 STU sing 340 n n C26 H261 STU sing 341 n n C26 H262 STU sing 342 n n C26 H263 STU sing 343 n n N2 C18 STU sing 344 n y N2 C17 STU sing 345 n y C18 C19 STU doub 346 n y C18 C11 STU sing 347 n y C19 C6 STU sing 348 n y C19 N3 STU sing 349 n y C6 C7 STU doub 350 n y C6 C5 STU sing 351 n y C7 C10 STU sing 352 n y C7 C8 STU sing 353 n n C10 C11 STU doub 354 n y C10 C9 STU sing 355 n n C11 C12 STU sing 356 n y C12 C17 STU doub 357 n y C12 C13 STU sing 358 n y C17 C16 STU sing 359 n y C16 C15 STU doub 360 n y C16 H16 STU sing 361 n n C15 C14 STU sing 362 n y C15 H15 STU sing 363 n n C14 C13 STU doub 364 n y C14 H14 STU sing 365 n n C13 H13 STU sing 366 n n C9 N1 STU sing 367 n n C9 H91 STU sing 368 n n C9 H92 STU sing 369 n n N1 C8 STU sing 370 n n N1 HN1 STU sing 371 n n C8 O5 STU doub 372 n n C5 C20 STU doub 373 n y C5 C4 STU sing 374 n y C20 C1 STU sing 375 n y C20 N3 STU sing 376 n y C1 C2 STU doub 377 n y C1 H1 STU sing 378 n n C2 C3 STU sing 379 n y C2 H2 STU sing 380 n n C3 C4 STU doub 381 n y C3 H3 STU sing 382 n n C4 H4 STU sing 383 n n O6 C27 STU sing 384 n n C27 H271 STU sing 385 n n C27 H272 STU sing 386 n n C27 H273 STU sing 387 n n N4 C28 STU sing 388 n n N4 HN4 STU sing 389 n n C28 H281 STU sing 390 n n C28 H282 STU sing 391 n n C28 H283 STU sing 392 n n # _atom_sites.entry_id 1OKY _atom_sites.fract_transf_matrix[1][1] 0.008053 _atom_sites.fract_transf_matrix[1][2] 0.00465 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009299 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021135 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 1360 1360 GOL GOL . C 2 GOL A 1 1361 1361 GOL GOL . D 2 GOL A 1 1362 1362 GOL GOL . E 3 SO4 A 1 1363 1363 SO4 SO4 . F 3 SO4 A 1 1364 1364 SO4 SO4 . G 3 SO4 A 1 1365 1365 SO4 SO4 . H 3 SO4 A 1 1366 1366 SO4 SO4 . I 3 SO4 A 1 1367 1367 SO4 SO4 . J 4 STU A 1 1368 1368 STU STU . K 5 HOH A 1 2001 2001 HOH HOH . K 5 HOH A 2 2002 2002 HOH HOH . K 5 HOH A 3 2003 2003 HOH HOH . K 5 HOH A 4 2004 2004 HOH HOH . K 5 HOH A 5 2005 2005 HOH HOH . K 5 HOH A 6 2006 2006 HOH HOH . K 5 HOH A 7 2007 2007 HOH HOH . K 5 HOH A 8 2008 2008 HOH HOH . K 5 HOH A 9 2009 2009 HOH HOH . K 5 HOH A 10 2010 2010 HOH HOH . K 5 HOH A 11 2011 2011 HOH HOH . K 5 HOH A 12 2012 2012 HOH HOH . K 5 HOH A 13 2013 2013 HOH HOH . K 5 HOH A 14 2014 2014 HOH HOH . K 5 HOH A 15 2015 2015 HOH HOH . K 5 HOH A 16 2016 2016 HOH HOH . K 5 HOH A 17 2017 2017 HOH HOH . K 5 HOH A 18 2018 2018 HOH HOH . K 5 HOH A 19 2019 2019 HOH HOH . K 5 HOH A 20 2020 2020 HOH HOH . K 5 HOH A 21 2021 2021 HOH HOH . K 5 HOH A 22 2022 2022 HOH HOH . K 5 HOH A 23 2023 2023 HOH HOH . K 5 HOH A 24 2024 2024 HOH HOH . K 5 HOH A 25 2025 2025 HOH HOH . K 5 HOH A 26 2026 2026 HOH HOH . K 5 HOH A 27 2027 2027 HOH HOH . K 5 HOH A 28 2028 2028 HOH HOH . K 5 HOH A 29 2029 2029 HOH HOH . K 5 HOH A 30 2030 2030 HOH HOH . K 5 HOH A 31 2031 2031 HOH HOH . K 5 HOH A 32 2032 2032 HOH HOH . K 5 HOH A 33 2033 2033 HOH HOH . K 5 HOH A 34 2034 2034 HOH HOH . K 5 HOH A 35 2035 2035 HOH HOH . K 5 HOH A 36 2036 2036 HOH HOH . K 5 HOH A 37 2037 2037 HOH HOH . K 5 HOH A 38 2038 2038 HOH HOH . K 5 HOH A 39 2039 2039 HOH HOH . K 5 HOH A 40 2040 2040 HOH HOH . K 5 HOH A 41 2041 2041 HOH HOH . K 5 HOH A 42 2042 2042 HOH HOH . K 5 HOH A 43 2043 2043 HOH HOH . K 5 HOH A 44 2044 2044 HOH HOH . K 5 HOH A 45 2045 2045 HOH HOH . K 5 HOH A 46 2046 2046 HOH HOH . K 5 HOH A 47 2047 2047 HOH HOH . K 5 HOH A 48 2048 2048 HOH HOH . K 5 HOH A 49 2049 2049 HOH HOH . K 5 HOH A 50 2050 2050 HOH HOH . K 5 HOH A 51 2051 2051 HOH HOH . K 5 HOH A 52 2052 2052 HOH HOH . K 5 HOH A 53 2053 2053 HOH HOH . K 5 HOH A 54 2054 2054 HOH HOH . K 5 HOH A 55 2055 2055 HOH HOH . K 5 HOH A 56 2056 2056 HOH HOH . K 5 HOH A 57 2057 2057 HOH HOH . K 5 HOH A 58 2058 2058 HOH HOH . K 5 HOH A 59 2059 2059 HOH HOH . K 5 HOH A 60 2060 2060 HOH HOH . K 5 HOH A 61 2061 2061 HOH HOH . K 5 HOH A 62 2062 2062 HOH HOH . K 5 HOH A 63 2063 2063 HOH HOH . K 5 HOH A 64 2064 2064 HOH HOH . K 5 HOH A 65 2065 2065 HOH HOH . K 5 HOH A 66 2066 2066 HOH HOH . K 5 HOH A 67 2067 2067 HOH HOH . K 5 HOH A 68 2068 2068 HOH HOH . K 5 HOH A 69 2069 2069 HOH HOH . K 5 HOH A 70 2070 2070 HOH HOH . K 5 HOH A 71 2071 2071 HOH HOH . K 5 HOH A 72 2072 2072 HOH HOH . K 5 HOH A 73 2073 2073 HOH HOH . K 5 HOH A 74 2074 2074 HOH HOH . K 5 HOH A 75 2075 2075 HOH HOH . K 5 HOH A 76 2076 2076 HOH HOH . K 5 HOH A 77 2077 2077 HOH HOH . K 5 HOH A 78 2078 2078 HOH HOH . K 5 HOH A 79 2079 2079 HOH HOH . K 5 HOH A 80 2080 2080 HOH HOH . K 5 HOH A 81 2081 2081 HOH HOH . K 5 HOH A 82 2082 2082 HOH HOH . K 5 HOH A 83 2083 2083 HOH HOH . K 5 HOH A 84 2084 2084 HOH HOH . K 5 HOH A 85 2085 2085 HOH HOH . K 5 HOH A 86 2086 2086 HOH HOH . K 5 HOH A 87 2087 2087 HOH HOH . K 5 HOH A 88 2088 2088 HOH HOH . K 5 HOH A 89 2089 2089 HOH HOH . K 5 HOH A 90 2090 2090 HOH HOH . K 5 HOH A 91 2091 2091 HOH HOH . K 5 HOH A 92 2092 2092 HOH HOH . K 5 HOH A 93 2093 2093 HOH HOH . K 5 HOH A 94 2094 2094 HOH HOH . K 5 HOH A 95 2095 2095 HOH HOH . K 5 HOH A 96 2096 2096 HOH HOH . K 5 HOH A 97 2097 2097 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O4 STU . . . J 4 82.889 19.845 13.98 1 20.99 ? O4 STU 1368 A 1 HETATM 2 C C25 STU . . . J 4 84.278 19.595 13.658 1 19.61 ? C25 STU 1368 A 1 HETATM 3 C C24 STU . . . J 4 84.847 20.523 12.559 1 20.28 ? C24 STU 1368 A 1 HETATM 4 C C23 STU . . . J 4 83.748 21.455 12.055 1 21.26 ? C23 STU 1368 A 1 HETATM 5 C C22 STU . . . J 4 82.557 20.621 11.61 1 20.75 ? C22 STU 1368 A 1 HETATM 6 C C21 STU . . . J 4 81.939 19.93 12.872 1 22.76 ? C21 STU 1368 A 1 HETATM 7 C C26 STU . . . J 4 80.791 20.824 13.403 1 21.03 ? C26 STU 1368 A 1 HETATM 8 N N2 STU . . . J 4 81.456 18.689 12.528 1 20.21 ? N2 STU 1368 A 1 HETATM 9 C C18 STU . . . J 4 82.162 17.525 12.606 1 19.75 ? C18 STU 1368 A 1 HETATM 10 C C19 STU . . . J 4 83.501 17.279 12.972 1 19.6 ? C19 STU 1368 A 1 HETATM 11 C C6 STU . . . J 4 84.049 16.022 12.899 1 20.12 ? C6 STU 1368 A 1 HETATM 12 C C7 STU . . . J 4 83.217 14.936 12.44 1 19.17 ? C7 STU 1368 A 1 HETATM 13 C C10 STU . . . J 4 81.934 15.217 12.098 1 18.12 ? C10 STU 1368 A 1 HETATM 14 C C11 STU . . . J 4 81.361 16.522 12.164 1 18.65 ? C11 STU 1368 A 1 HETATM 15 C C12 STU . . . J 4 80.154 17.053 11.812 1 17.33 ? C12 STU 1368 A 1 HETATM 16 C C17 STU . . . J 4 80.172 18.45 12.023 1 16.95 ? C17 STU 1368 A 1 HETATM 17 C C16 STU . . . J 4 79.039 19.219 11.69 1 15.08 ? C16 STU 1368 A 1 HETATM 18 C C15 STU . . . J 4 77.901 18.569 11.148 1 15.23 ? C15 STU 1368 A 1 HETATM 19 C C14 STU . . . J 4 77.899 17.158 10.946 1 14.96 ? C14 STU 1368 A 1 HETATM 20 C C13 STU . . . J 4 79.035 16.386 11.282 1 14.45 ? C13 STU 1368 A 1 HETATM 21 C C9 STU . . . J 4 81.325 14.098 11.689 1 18.59 ? C9 STU 1368 A 1 HETATM 22 N N1 STU . . . J 4 82.281 13.08 11.786 1 14.55 ? N1 STU 1368 A 1 HETATM 23 C C8 STU . . . J 4 83.457 13.603 12.261 1 17.8 ? C8 STU 1368 A 1 HETATM 24 O O5 STU . . . J 4 84.493 12.981 12.504 1 16.32 ? O5 STU 1368 A 1 HETATM 25 C C5 STU . . . J 4 85.364 16.127 13.248 1 19.65 ? C5 STU 1368 A 1 HETATM 26 C C20 STU . . . J 4 85.663 17.477 13.561 1 20.02 ? C20 STU 1368 A 1 HETATM 27 C C1 STU . . . J 4 86.968 17.838 13.942 1 17.72 ? C1 STU 1368 A 1 HETATM 28 C C2 STU . . . J 4 87.961 16.831 14.007 1 21.57 ? C2 STU 1368 A 1 HETATM 29 C C3 STU . . . J 4 87.645 15.476 13.689 1 21.21 ? C3 STU 1368 A 1 HETATM 30 C C4 STU . . . J 4 86.329 15.117 13.306 1 20.57 ? C4 STU 1368 A 1 HETATM 31 N N3 STU . . . J 4 84.462 18.15 13.376 1 20.5 ? N3 STU 1368 A 1 HETATM 32 O O6 STU . . . J 4 83.091 19.645 10.691 1 25.31 ? O6 STU 1368 A 1 HETATM 33 C C27 STU . . . J 4 82.178 19.404 9.614 1 24.89 ? C27 STU 1368 A 1 HETATM 34 N N4 STU . . . J 4 84.251 22.242 10.916 1 23.47 ? N4 STU 1368 A 1 HETATM 35 C C28 STU . . . J 4 83.716 23.544 10.481 1 21.82 ? C28 STU 1368 A 1 # _model_server_stats.io_time_ms 52 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 327 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 35 #