data_1OL6 # _model_server_result.job_id 2hgjHIAuomhj9Z_Isjqvbw _model_server_result.datetime_utc '2024-11-23 22:42:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ol6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1388}' # _entry.id 1OL6 # _exptl.entry_id 1OL6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1OL6 _cell.length_a 87.31 _cell.length_b 87.31 _cell.length_c 77.33 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1OL6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 1OL6 _atom_sites.fract_transf_matrix[1][1] 0.011453 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011453 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012931 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ATP A 1 1388 1388 ATP ATP . C 3 HOH A 1 2001 2001 HOH HOH . C 3 HOH A 2 2002 2002 HOH HOH . C 3 HOH A 3 2003 2003 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . B 2 209.746 28.04 -102.392 1 92.2 ? PG ATP 1388 A 1 HETATM 2 O O1G ATP . . . B 2 210.725 28.862 -103.148 1 87.86 ? O1G ATP 1388 A 1 HETATM 3 O O2G ATP . . . B 2 208.564 28.83 -101.874 1 86.46 ? O2G ATP 1388 A 1 HETATM 4 O O3G ATP . . . B 2 210.406 27.473 -101.247 1 88.27 ? O3G ATP 1388 A 1 HETATM 5 P PB ATP . . . B 2 209.841 25.357 -103.825 1 85.16 ? PB ATP 1388 A 1 HETATM 6 O O1B ATP . . . B 2 210.262 25.368 -105.232 1 84.82 ? O1B ATP 1388 A 1 HETATM 7 O O2B ATP . . . B 2 210.819 24.932 -102.833 1 83.82 ? O2B ATP 1388 A 1 HETATM 8 O O3B ATP . . . B 2 209.26 26.795 -103.376 1 85.3 ? O3B ATP 1388 A 1 HETATM 9 P PA ATP . . . B 2 207.157 24.685 -103.046 1 73.06 ? PA ATP 1388 A 1 HETATM 10 O O1A ATP . . . B 2 207.212 24.983 -101.607 1 72.92 ? O1A ATP 1388 A 1 HETATM 11 O O2A ATP . . . B 2 206.477 25.701 -103.825 1 71.11 ? O2A ATP 1388 A 1 HETATM 12 O O3A ATP . . . B 2 208.62 24.422 -103.627 1 77.47 ? O3A ATP 1388 A 1 HETATM 13 O O5' ATP . . . B 2 206.5 23.262 -103.3 1 68.55 ? O5' ATP 1388 A 1 HETATM 14 C C5' ATP . . . B 2 206.362 22.909 -104.714 1 57.3 ? C5' ATP 1388 A 1 HETATM 15 C C4' ATP . . . B 2 204.929 22.513 -105.058 1 52.44 ? C4' ATP 1388 A 1 HETATM 16 O O4' ATP . . . B 2 204.617 21.307 -104.295 1 52.05 ? O4' ATP 1388 A 1 HETATM 17 C C3' ATP . . . B 2 203.836 23.484 -104.623 1 49.17 ? C3' ATP 1388 A 1 HETATM 18 O O3' ATP . . . B 2 203.605 24.474 -105.549 1 50.48 ? O3' ATP 1388 A 1 HETATM 19 C C2' ATP . . . B 2 202.635 22.557 -104.339 1 47.17 ? C2' ATP 1388 A 1 HETATM 20 O O2' ATP . . . B 2 201.86 22.192 -105.451 1 43.99 ? O2' ATP 1388 A 1 HETATM 21 C C1' ATP . . . B 2 203.292 21.348 -103.79 1 48.11 ? C1' ATP 1388 A 1 HETATM 22 N N9 ATP . . . B 2 203.307 21.308 -102.317 1 47.58 ? N9 ATP 1388 A 1 HETATM 23 C C8 ATP . . . B 2 204.261 22.009 -101.585 1 46.08 ? C8 ATP 1388 A 1 HETATM 24 N N7 ATP . . . B 2 203.974 22.131 -100.298 1 47.49 ? N7 ATP 1388 A 1 HETATM 25 C C5 ATP . . . B 2 202.79 21.409 -100.15 1 47.28 ? C5 ATP 1388 A 1 HETATM 26 C C6 ATP . . . B 2 201.951 21.042 -99.006 1 48.17 ? C6 ATP 1388 A 1 HETATM 27 N N6 ATP . . . B 2 202.236 21.28 -97.73 1 49.18 ? N6 ATP 1388 A 1 HETATM 28 N N1 ATP . . . B 2 200.767 20.435 -99.293 1 47.3 ? N1 ATP 1388 A 1 HETATM 29 C C2 ATP . . . B 2 200.468 20.145 -100.587 1 48.26 ? C2 ATP 1388 A 1 HETATM 30 N N3 ATP . . . B 2 201.298 20.127 -101.62 1 48.71 ? N3 ATP 1388 A 1 HETATM 31 C C4 ATP . . . B 2 202.333 20.984 -101.412 1 47.49 ? C4 ATP 1388 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 900 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #