data_1OLD # _model_server_result.job_id -qbXc7h27wLizG9uGJlT3A _model_server_result.datetime_utc '2025-03-06 05:54:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1old # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":25}' # _entry.id 1OLD # _exptl.entry_id 1OLD _exptl.method 'SOLUTION NMR' # _entity.details ? _entity.formula_weight 174.224 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ARGININEAMIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1OLD _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1OLD _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order hydrog WATSON-CRICK hydrog1 A N1 DG 1 A DG 1 1_555 A N3 DC 24 A DC 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N2 DG 1 A DG 1 1_555 A O2 DC 24 A DC 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O6 DG 1 A DG 1 1_555 A N4 DC 24 A DC 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N1 DA 2 A DA 2 1_555 A N3 DT 23 A DT 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A N6 DA 2 A DA 2 1_555 A O4 DT 23 A DT 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A N3 DT 3 A DT 3 1_555 A N1 DA 22 A DA 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A O4 DT 3 A DT 3 1_555 A N6 DA 22 A DA 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A N3 DC 4 A DC 4 1_555 A N1 DG 21 A DG 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A N4 DC 4 A DC 4 1_555 A O6 DG 21 A DG 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A O2 DC 4 A DC 4 1_555 A N2 DG 21 A DG 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A N1 DG 5 A DG 5 1_555 A N3 DC 20 A DC 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A N2 DG 5 A DG 5 1_555 A O2 DC 20 A DC 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A O6 DG 5 A DG 5 1_555 A N4 DC 20 A DC 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A N1 DA 6 A DA 6 1_555 A N3 DT 19 A DT 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A N6 DA 6 A DA 6 1_555 A O4 DT 19 A DT 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A N1 DA 7 A DA 7 1_555 A N3 DT 18 A DT 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A N6 DA 7 A DA 7 1_555 A O4 DT 18 A DT 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_25_PAIR hydrog18 A N6 DA 8 A DA 8 1_555 A N3 DC 17 A DC 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_25_PAIR hydrog19 A N7 DA 8 A DA 8 1_555 A N4 DC 17 A DC 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 A N1 DG 10 A DG 10 1_555 A N3 DC 16 A DC 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 A N2 DG 10 A DG 10 1_555 A O2 DC 16 A DC 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 A O6 DG 10 A DG 10 1_555 A N4 DC 16 A DC 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DT-DG MISPAIR' hydrog23 A O2 DT 11 A DT 11 1_555 A N2 DG 13 A DG 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DT-DG MISPAIR' hydrog24 A N3 DT 11 A DT 11 1_555 A O6 DG 15 A DG 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DG-DG MISPAIR' hydrog25 A N2 DG 13 A DG 13 1_555 A N7 DG 15 A DG 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C6 H16 N5 O 1' _chem_comp.formula_weight 174.224 _chem_comp.id AAR _chem_comp.mon_nstd_flag n _chem_comp.name ARGININEAMIDE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA AAR sing 1 n n N H AAR sing 2 n n N H2 AAR sing 3 n n CA CB AAR sing 4 n n CA C AAR sing 5 n n CA HA AAR sing 6 n n CB CG AAR sing 7 n n CB HB2 AAR sing 8 n n CB HB3 AAR sing 9 n n CG CD AAR sing 10 n n CG HG2 AAR sing 11 n n CG HG3 AAR sing 12 n n CD NE AAR sing 13 n n CD HD2 AAR sing 14 n n CD HD3 AAR sing 15 n n NE CZ AAR sing 16 n n NE HE AAR sing 17 n n CZ NH1 AAR sing 18 n n CZ NH2 AAR doub 19 n n NH1 HH11 AAR sing 20 n n NH1 HH12 AAR sing 21 n n NH2 HH21 AAR sing 22 n n NH2 HH22 AAR sing 23 n n C O AAR doub 24 n n C NT AAR sing 25 n n NT HNT1 AAR sing 26 n n NT HNT2 AAR sing 27 n n # _atom_sites.entry_id 1OLD _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id AAR _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 25 _pdbx_nonpoly_scheme.auth_seq_num 1 _pdbx_nonpoly_scheme.pdb_mon_id AAR _pdbx_nonpoly_scheme.auth_mon_id ARM _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N AAR . . . B 2 0.754 6.434 -6.22 1 0.39 ? N AAR 25 A 1 HETATM 2 C CA AAR . . . B 2 0.664 6.525 -4.779 1 0.32 ? CA AAR 25 A 1 HETATM 3 C CB AAR . . . B 2 -0.844 6.392 -4.422 1 0.28 ? CB AAR 25 A 1 HETATM 4 C CG AAR . . . B 2 -1.227 6.456 -2.975 1 0.24 ? CG AAR 25 A 1 HETATM 5 C CD AAR . . . B 2 -2.541 6.586 -2.368 1 0.26 ? CD AAR 25 A 1 HETATM 6 N NE AAR . . . B 2 -2.316 6.44 -0.942 1 0.26 ? NE AAR 25 A 1 HETATM 7 C CZ AAR . . . B 2 -3.253 6.252 -0.035 1 0.3 ? CZ AAR 25 A 1 HETATM 8 N NH1 AAR . . . B 2 -2.867 6.144 1.219 1 0.32 ? NH1 AAR 25 A 1 HETATM 9 N NH2 AAR . . . B 2 -4.533 6.142 -0.343 1 0.37 ? NH2 AAR 25 A 1 HETATM 10 C C AAR . . . B 2 1.595 5.502 -4.129 1 0.38 ? C AAR 25 A 1 HETATM 11 O O AAR . . . B 2 1.742 4.361 -4.55 1 0.54 ? O AAR 25 A 1 HETATM 12 N NT AAR . . . B 2 2.244 5.86 -3.042 1 0.6 ? NT AAR 25 A 1 HETATM 13 H H2 AAR . . . B 2 0.369 5.658 -6.676 1 0.54 ? H2 AAR 25 A 1 HETATM 14 H H AAR . . . B 2 1.187 7.159 -6.718 1 0.45 ? H AAR 25 A 1 HETATM 15 H HA AAR . . . B 2 0.999 7.503 -4.466 1 0.32 ? HA AAR 25 A 1 HETATM 16 H HB2 AAR . . . B 2 -1.204 5.443 -4.788 1 0.31 ? HB2 AAR 25 A 1 HETATM 17 H HB3 AAR . . . B 2 -1.327 7.225 -4.912 1 0.3 ? HB3 AAR 25 A 1 HETATM 18 H HG2 AAR . . . B 2 -0.771 7.351 -2.578 1 0.24 ? HG2 AAR 25 A 1 HETATM 19 H HG3 AAR . . . B 2 -0.892 5.521 -2.553 1 0.25 ? HG3 AAR 25 A 1 HETATM 20 H HD2 AAR . . . B 2 -3.166 5.767 -2.693 1 0.32 ? HD2 AAR 25 A 1 HETATM 21 H HD3 AAR . . . B 2 -2.984 7.541 -2.604 1 0.29 ? HD3 AAR 25 A 1 HETATM 22 H HE AAR . . . B 2 -1.389 6.455 -0.622 1 0.31 ? HE AAR 25 A 1 HETATM 23 H HH11 AAR . . . B 2 -1.896 6.188 1.455 1 0.33 ? HH11 AAR 25 A 1 HETATM 24 H HH12 AAR . . . B 2 -3.555 5.987 1.927 1 0.38 ? HH12 AAR 25 A 1 HETATM 25 H HH21 AAR . . . B 2 -4.771 6.164 -1.314 1 0.41 ? HH21 AAR 25 A 1 HETATM 26 H HH22 AAR . . . B 2 -5.256 5.995 0.332 1 0.43 ? HH22 AAR 25 A 1 HETATM 27 H HNT1 AAR . . . B 2 2.147 6.771 -2.693 1 0.81 ? HNT1 AAR 25 A 1 HETATM 28 H HNT2 AAR . . . B 2 2.811 5.216 -2.567 1 0.68 ? HNT2 AAR 25 A 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 4 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 1713 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 28 #