data_1ON7 # _model_server_result.job_id Us6hHQXUL6Xm2zCq3txW0w _model_server_result.datetime_utc '2024-11-18 12:25:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1on7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":484}' # _entry.id 1ON7 # _exptl.entry_id 1ON7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 588.694 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description PHYCOCYANOBILIN _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1ON7 _cell.length_a 153.29 _cell.length_b 153.29 _cell.length_c 39.048 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1ON7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 63' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA hexameric 6 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G 1 1 A,B,C,D,E,F,G 2 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_535 -y,x-y-2,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 153.29 -265.506068 0 3 'crystal symmetry operation' 3_755 -x+y+2,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 306.58 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 84 A CYS 84 1_555 C CAC CYC . A CYC 484 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.703 ? covale ? covale2 B SG CYS 82 B CYS 84 1_555 D CAC CYC . B CYC 584 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.843 ? covale ? covale3 B SG CYS 153 B CYS 155 1_555 E CAC CYC . B CYC 555 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.822 ? # _chem_comp.formula 'C33 H40 N4 O6' _chem_comp.formula_weight 588.694 _chem_comp.id CYC _chem_comp.mon_nstd_flag . _chem_comp.name PHYCOCYANOBILIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A CYC doub 70 z n CHA C4D CYC sing 71 n n CHA HHA CYC sing 72 n n NA C1A CYC sing 73 n n NA C4A CYC doub 74 n n C1A C2A CYC sing 75 n n C2A C3A CYC doub 76 n n C2A CAA CYC sing 77 n n C3A C4A CYC sing 78 n n C3A CMA CYC sing 79 n n C4A CHB CYC sing 80 n n CMA HMA1 CYC sing 81 n n CMA HMA2 CYC sing 82 n n CMA HMA3 CYC sing 83 n n CAA CBA CYC sing 84 n n CAA HAA1 CYC sing 85 n n CAA HAA2 CYC sing 86 n n CBA CGA CYC sing 87 n n CBA HBA1 CYC sing 88 n n CBA HBA2 CYC sing 89 n n CGA O1A CYC doub 90 n n CGA O2A CYC sing 91 n n O2A H2A CYC sing 92 n n CHB C1B CYC doub 93 z n CHB HHB CYC sing 94 n n NB C1B CYC sing 95 n n NB C4B CYC sing 96 n n NB HB CYC sing 97 n n C1B C2B CYC sing 98 n n C2B C3B CYC doub 99 n n C2B CMB CYC sing 100 n n C3B C4B CYC sing 101 n n C3B CAB CYC sing 102 n n C4B OB CYC doub 103 n n CMB HMB1 CYC sing 104 n n CMB HMB2 CYC sing 105 n n CMB HMB3 CYC sing 106 n n CAB CBB CYC sing 107 n n CAB HAB1 CYC sing 108 n n CAB HAB2 CYC sing 109 n n CBB HBB1 CYC sing 110 n n CBB HBB2 CYC sing 111 n n CBB HBB3 CYC sing 112 n n NC C1C CYC sing 113 n n NC C4C CYC sing 114 n n NC HC CYC sing 115 n n C1C C2C CYC sing 116 n n C1C OC CYC doub 117 n n C2C C3C CYC sing 118 n n C2C CMC CYC sing 119 n n C2C H2C CYC sing 120 n n C3C C4C CYC sing 121 n n C3C CAC CYC sing 122 n n C3C H3C CYC sing 123 n n C4C CHD CYC doub 124 z n CMC HMC1 CYC sing 125 n n CMC HMC2 CYC sing 126 n n CMC HMC3 CYC sing 127 n n CAC CBC CYC sing 128 n n CAC HAC1 CYC sing 129 n n CAC HAC2 CYC sing 130 n n CBC HBC1 CYC sing 131 n n CBC HBC2 CYC sing 132 n n CBC HBC3 CYC sing 133 n n CHD C1D CYC sing 134 n n CHD HHD CYC sing 135 n n ND C1D CYC sing 136 n y ND C4D CYC sing 137 n y ND HD CYC sing 138 n n C1D C2D CYC doub 139 n y C2D C3D CYC sing 140 n y C2D CMD CYC sing 141 n n C3D C4D CYC doub 142 n y C3D CAD CYC sing 143 n n CMD HMD1 CYC sing 144 n n CMD HMD2 CYC sing 145 n n CMD HMD3 CYC sing 146 n n CAD CBD CYC sing 147 n n CAD HAD1 CYC sing 148 n n CAD HAD2 CYC sing 149 n n CBD CGD CYC sing 150 n n CBD HBD1 CYC sing 151 n n CBD HBD2 CYC sing 152 n n CGD O1D CYC doub 153 n n CGD O2D CYC sing 154 n n O2D H2D CYC sing 155 n n # _atom_sites.entry_id 1ON7 _atom_sites.fract_transf_matrix[1][1] 0.006524 _atom_sites.fract_transf_matrix[1][2] 0.003766 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007533 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.02561 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CYC A 1 484 484 CYC CYC . D 3 CYC B 1 584 584 CYC CYC . E 3 CYC B 1 555 555 CYC CYC . F 4 HOH A 1 485 3 HOH WAT . F 4 HOH A 2 486 5 HOH WAT . F 4 HOH A 3 487 6 HOH WAT . F 4 HOH A 4 488 7 HOH WAT . F 4 HOH A 5 489 8 HOH WAT . F 4 HOH A 6 490 15 HOH WAT . F 4 HOH A 7 491 18 HOH WAT . F 4 HOH A 8 492 19 HOH WAT . F 4 HOH A 9 493 20 HOH WAT . F 4 HOH A 10 494 27 HOH WAT . F 4 HOH A 11 495 30 HOH WAT . F 4 HOH A 12 496 33 HOH WAT . G 4 HOH B 1 585 1 HOH WAT . G 4 HOH B 2 586 2 HOH WAT . G 4 HOH B 3 587 4 HOH WAT . G 4 HOH B 4 588 9 HOH WAT . G 4 HOH B 5 589 10 HOH WAT . G 4 HOH B 6 590 11 HOH WAT . G 4 HOH B 7 591 12 HOH WAT . G 4 HOH B 8 592 13 HOH WAT . G 4 HOH B 9 593 14 HOH WAT . G 4 HOH B 10 594 16 HOH WAT . G 4 HOH B 11 595 17 HOH WAT . G 4 HOH B 12 596 21 HOH WAT . G 4 HOH B 13 597 22 HOH WAT . G 4 HOH B 14 598 23 HOH WAT . G 4 HOH B 15 599 24 HOH WAT . G 4 HOH B 16 600 25 HOH WAT . G 4 HOH B 17 601 26 HOH WAT . G 4 HOH B 18 602 28 HOH WAT . G 4 HOH B 19 603 29 HOH WAT . G 4 HOH B 20 604 31 HOH WAT . G 4 HOH B 21 605 32 HOH WAT . G 4 HOH B 22 606 34 HOH WAT . G 4 HOH B 23 607 35 HOH WAT . G 4 HOH B 24 608 36 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA CYC . . . C 3 161.418 -49.926 -11.647 1 78.81 ? CHA CYC 484 A 1 HETATM 2 N NA CYC . . . C 3 159.373 -50.892 -10.836 1 73.46 ? NA CYC 484 A 1 HETATM 3 C C1A CYC . . . C 3 160.56 -50.994 -11.474 1 75.06 ? C1A CYC 484 A 1 HETATM 4 C C2A CYC . . . C 3 160.789 -52.33 -11.932 1 73.91 ? C2A CYC 484 A 1 HETATM 5 C C3A CYC . . . C 3 159.71 -53.109 -11.562 1 73.91 ? C3A CYC 484 A 1 HETATM 6 C C4A CYC . . . C 3 158.791 -52.152 -10.85 1 73.23 ? C4A CYC 484 A 1 HETATM 7 C CMA CYC . . . C 3 159.578 -54.634 -11.871 1 73.97 ? CMA CYC 484 A 1 HETATM 8 C CAA CYC . . . C 3 162.058 -52.798 -12.715 1 73.52 ? CAA CYC 484 A 1 HETATM 9 C CBA CYC . . . C 3 161.831 -53.123 -14.223 1 73.3 ? CBA CYC 484 A 1 HETATM 10 C CGA CYC . . . C 3 161.064 -52.06 -15.002 1 73.89 ? CGA CYC 484 A 1 HETATM 11 O O1A CYC . . . C 3 159.805 -52.11 -14.956 1 72.95 ? O1A CYC 484 A 1 HETATM 12 O O2A CYC . . . C 3 161.694 -51.199 -15.642 1 75.02 ? O2A CYC 484 A 1 HETATM 13 C CHB CYC . . . C 3 157.501 -52.377 -10.237 1 73.41 ? CHB CYC 484 A 1 HETATM 14 N NB CYC . . . C 3 156.623 -54.107 -11.748 1 73.46 ? NB CYC 484 A 1 HETATM 15 C C1B CYC . . . C 3 156.482 -53.283 -10.642 1 73.56 ? C1B CYC 484 A 1 HETATM 16 C C2B CYC . . . C 3 155.18 -53.537 -10.043 1 73.7 ? C2B CYC 484 A 1 HETATM 17 C C3B CYC . . . C 3 154.55 -54.522 -10.804 1 74.62 ? C3B CYC 484 A 1 HETATM 18 C C4B CYC . . . C 3 155.497 -54.826 -11.837 1 74.1 ? C4B CYC 484 A 1 HETATM 19 C CMB CYC . . . C 3 154.65 -52.836 -8.815 1 72.91 ? CMB CYC 484 A 1 HETATM 20 C CAB CYC . . . C 3 153.136 -55.132 -10.552 1 75.54 ? CAB CYC 484 A 1 HETATM 21 C CBB CYC . . . C 3 152.032 -54.552 -11.376 1 76.26 ? CBB CYC 484 A 1 HETATM 22 O OB CYC . . . C 3 155.317 -55.66 -12.725 1 74.83 ? OB CYC 484 A 1 HETATM 23 N NC CYC . . . C 3 162.093 -44.304 -8.18 1 92.36 ? NC CYC 484 A 1 HETATM 24 C C1C CYC . . . C 3 162.069 -43.214 -7.44 1 92.64 ? C1C CYC 484 A 1 HETATM 25 C C2C CYC . . . C 3 160.827 -43.017 -6.633 1 92.92 ? C2C CYC 484 A 1 HETATM 26 C C3C CYC . . . C 3 159.987 -44.358 -7.004 1 93.12 ? C3C CYC 484 A 1 HETATM 27 C C4C CYC . . . C 3 160.89 -45.069 -8.031 1 91.93 ? C4C CYC 484 A 1 HETATM 28 C CMC CYC . . . C 3 160.975 -42.606 -5.198 1 93.17 ? CMC CYC 484 A 1 HETATM 29 C CAC CYC . . . C 3 158.403 -44.206 -7.702 1 93.96 ? CAC CYC 484 A 1 HETATM 30 C CBC CYC . . . C 3 157.367 -44.267 -6.502 1 94.65 ? CBC CYC 484 A 1 HETATM 31 O OC CYC . . . C 3 163.02 -42.369 -7.416 1 92.29 ? OC CYC 484 A 1 HETATM 32 C CHD CYC . . . C 3 160.541 -46.117 -8.943 1 87.97 ? CHD CYC 484 A 1 HETATM 33 N ND CYC . . . C 3 160.778 -48.047 -10.158 1 83.01 ? ND CYC 484 A 1 HETATM 34 C C1D CYC . . . C 3 161.241 -46.823 -9.904 1 84.29 ? C1D CYC 484 A 1 HETATM 35 C C2D CYC . . . C 3 162.411 -46.561 -10.746 1 83.23 ? C2D CYC 484 A 1 HETATM 36 C C3D CYC . . . C 3 162.612 -47.712 -11.49 1 82.02 ? C3D CYC 484 A 1 HETATM 37 C C4D CYC . . . C 3 161.558 -48.626 -11.098 1 81.31 ? C4D CYC 484 A 1 HETATM 38 C CMD CYC . . . C 3 163.329 -45.308 -10.858 1 83.83 ? CMD CYC 484 A 1 HETATM 39 C CAD CYC . . . C 3 163.702 -48.06 -12.531 1 82.19 ? CAD CYC 484 A 1 HETATM 40 C CBD CYC . . . C 3 164.844 -48.786 -11.779 1 82.36 ? CBD CYC 484 A 1 HETATM 41 C CGD CYC . . . C 3 166.079 -49.293 -12.474 1 83.31 ? CGD CYC 484 A 1 HETATM 42 O O1D CYC . . . C 3 166.956 -49.871 -11.775 1 82.98 ? O1D CYC 484 A 1 HETATM 43 O O2D CYC . . . C 3 166.203 -49.132 -13.721 1 83.6 ? O2D CYC 484 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 231 _model_server_stats.encode_time_ms 15 _model_server_stats.element_count 43 #