data_1ON7 # _model_server_result.job_id fjM7NGgM2TtKP46cCaAu3w _model_server_result.datetime_utc '2024-11-18 12:21:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1on7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":584}' # _entry.id 1ON7 # _exptl.entry_id 1ON7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 588.694 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description PHYCOCYANOBILIN _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1ON7 _cell.length_a 153.29 _cell.length_b 153.29 _cell.length_c 39.048 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1ON7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 63' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA hexameric 6 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G 1 1 A,B,C,D,E,F,G 2 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_535 -y,x-y-2,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 153.29 -265.506068 0 3 'crystal symmetry operation' 3_755 -x+y+2,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 306.58 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 84 A CYS 84 1_555 C CAC CYC . A CYC 484 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.703 ? covale ? covale2 B SG CYS 82 B CYS 84 1_555 D CAC CYC . B CYC 584 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.843 ? covale ? covale3 B SG CYS 153 B CYS 155 1_555 E CAC CYC . B CYC 555 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.822 ? # _chem_comp.formula 'C33 H40 N4 O6' _chem_comp.formula_weight 588.694 _chem_comp.id CYC _chem_comp.mon_nstd_flag . _chem_comp.name PHYCOCYANOBILIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A CYC doub 70 z n CHA C4D CYC sing 71 n n CHA HHA CYC sing 72 n n NA C1A CYC sing 73 n n NA C4A CYC doub 74 n n C1A C2A CYC sing 75 n n C2A C3A CYC doub 76 n n C2A CAA CYC sing 77 n n C3A C4A CYC sing 78 n n C3A CMA CYC sing 79 n n C4A CHB CYC sing 80 n n CMA HMA1 CYC sing 81 n n CMA HMA2 CYC sing 82 n n CMA HMA3 CYC sing 83 n n CAA CBA CYC sing 84 n n CAA HAA1 CYC sing 85 n n CAA HAA2 CYC sing 86 n n CBA CGA CYC sing 87 n n CBA HBA1 CYC sing 88 n n CBA HBA2 CYC sing 89 n n CGA O1A CYC doub 90 n n CGA O2A CYC sing 91 n n O2A H2A CYC sing 92 n n CHB C1B CYC doub 93 z n CHB HHB CYC sing 94 n n NB C1B CYC sing 95 n n NB C4B CYC sing 96 n n NB HB CYC sing 97 n n C1B C2B CYC sing 98 n n C2B C3B CYC doub 99 n n C2B CMB CYC sing 100 n n C3B C4B CYC sing 101 n n C3B CAB CYC sing 102 n n C4B OB CYC doub 103 n n CMB HMB1 CYC sing 104 n n CMB HMB2 CYC sing 105 n n CMB HMB3 CYC sing 106 n n CAB CBB CYC sing 107 n n CAB HAB1 CYC sing 108 n n CAB HAB2 CYC sing 109 n n CBB HBB1 CYC sing 110 n n CBB HBB2 CYC sing 111 n n CBB HBB3 CYC sing 112 n n NC C1C CYC sing 113 n n NC C4C CYC sing 114 n n NC HC CYC sing 115 n n C1C C2C CYC sing 116 n n C1C OC CYC doub 117 n n C2C C3C CYC sing 118 n n C2C CMC CYC sing 119 n n C2C H2C CYC sing 120 n n C3C C4C CYC sing 121 n n C3C CAC CYC sing 122 n n C3C H3C CYC sing 123 n n C4C CHD CYC doub 124 z n CMC HMC1 CYC sing 125 n n CMC HMC2 CYC sing 126 n n CMC HMC3 CYC sing 127 n n CAC CBC CYC sing 128 n n CAC HAC1 CYC sing 129 n n CAC HAC2 CYC sing 130 n n CBC HBC1 CYC sing 131 n n CBC HBC2 CYC sing 132 n n CBC HBC3 CYC sing 133 n n CHD C1D CYC sing 134 n n CHD HHD CYC sing 135 n n ND C1D CYC sing 136 n y ND C4D CYC sing 137 n y ND HD CYC sing 138 n n C1D C2D CYC doub 139 n y C2D C3D CYC sing 140 n y C2D CMD CYC sing 141 n n C3D C4D CYC doub 142 n y C3D CAD CYC sing 143 n n CMD HMD1 CYC sing 144 n n CMD HMD2 CYC sing 145 n n CMD HMD3 CYC sing 146 n n CAD CBD CYC sing 147 n n CAD HAD1 CYC sing 148 n n CAD HAD2 CYC sing 149 n n CBD CGD CYC sing 150 n n CBD HBD1 CYC sing 151 n n CBD HBD2 CYC sing 152 n n CGD O1D CYC doub 153 n n CGD O2D CYC sing 154 n n O2D H2D CYC sing 155 n n # _atom_sites.entry_id 1ON7 _atom_sites.fract_transf_matrix[1][1] 0.006524 _atom_sites.fract_transf_matrix[1][2] 0.003766 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007533 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.02561 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CYC A 1 484 484 CYC CYC . D 3 CYC B 1 584 584 CYC CYC . E 3 CYC B 1 555 555 CYC CYC . F 4 HOH A 1 485 3 HOH WAT . F 4 HOH A 2 486 5 HOH WAT . F 4 HOH A 3 487 6 HOH WAT . F 4 HOH A 4 488 7 HOH WAT . F 4 HOH A 5 489 8 HOH WAT . F 4 HOH A 6 490 15 HOH WAT . F 4 HOH A 7 491 18 HOH WAT . F 4 HOH A 8 492 19 HOH WAT . F 4 HOH A 9 493 20 HOH WAT . F 4 HOH A 10 494 27 HOH WAT . F 4 HOH A 11 495 30 HOH WAT . F 4 HOH A 12 496 33 HOH WAT . G 4 HOH B 1 585 1 HOH WAT . G 4 HOH B 2 586 2 HOH WAT . G 4 HOH B 3 587 4 HOH WAT . G 4 HOH B 4 588 9 HOH WAT . G 4 HOH B 5 589 10 HOH WAT . G 4 HOH B 6 590 11 HOH WAT . G 4 HOH B 7 591 12 HOH WAT . G 4 HOH B 8 592 13 HOH WAT . G 4 HOH B 9 593 14 HOH WAT . G 4 HOH B 10 594 16 HOH WAT . G 4 HOH B 11 595 17 HOH WAT . G 4 HOH B 12 596 21 HOH WAT . G 4 HOH B 13 597 22 HOH WAT . G 4 HOH B 14 598 23 HOH WAT . G 4 HOH B 15 599 24 HOH WAT . G 4 HOH B 16 600 25 HOH WAT . G 4 HOH B 17 601 26 HOH WAT . G 4 HOH B 18 602 28 HOH WAT . G 4 HOH B 19 603 29 HOH WAT . G 4 HOH B 20 604 31 HOH WAT . G 4 HOH B 21 605 32 HOH WAT . G 4 HOH B 22 606 34 HOH WAT . G 4 HOH B 23 607 35 HOH WAT . G 4 HOH B 24 608 36 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA CYC . . . D 3 134.485 -93.499 -13.966 1 53.76 ? CHA CYC 584 B 1 HETATM 2 N NA CYC . . . D 3 134.541 -91.091 -13.909 1 53.42 ? NA CYC 584 B 1 HETATM 3 C C1A CYC . . . D 3 135.155 -92.297 -13.788 1 54.43 ? C1A CYC 584 B 1 HETATM 4 C C2A CYC . . . D 3 136.548 -92.135 -13.444 1 54.51 ? C2A CYC 584 B 1 HETATM 5 C C3A CYC . . . D 3 136.815 -90.785 -13.348 1 53.17 ? C3A CYC 584 B 1 HETATM 6 C C4A CYC . . . D 3 135.502 -90.119 -13.65 1 52.88 ? C4A CYC 584 B 1 HETATM 7 C CMA CYC . . . D 3 138.203 -90.186 -12.995 1 53.22 ? CMA CYC 584 B 1 HETATM 8 C CAA CYC . . . D 3 137.564 -93.304 -13.213 1 55.8 ? CAA CYC 584 B 1 HETATM 9 C CBA CYC . . . D 3 137.984 -93.559 -11.732 1 56.84 ? CBA CYC 584 B 1 HETATM 10 C CGA CYC . . . D 3 136.851 -93.427 -10.716 1 59 ? CGA CYC 584 B 1 HETATM 11 O O1A CYC . . . D 3 136.807 -92.35 -10.052 1 59.51 ? O1A CYC 584 B 1 HETATM 12 O O2A CYC . . . D 3 136.02 -94.359 -10.593 1 59.43 ? O2A CYC 584 B 1 HETATM 13 C CHB CYC . . . D 3 135.19 -88.714 -13.684 1 51.49 ? CHB CYC 584 B 1 HETATM 14 N NB CYC . . . D 3 136.335 -88.108 -11.606 1 52.61 ? NB CYC 584 B 1 HETATM 15 C C1B CYC . . . D 3 135.586 -87.756 -12.723 1 50.52 ? C1B CYC 584 B 1 HETATM 16 C C2B CYC . . . D 3 135.346 -86.332 -12.685 1 50.82 ? C2B CYC 584 B 1 HETATM 17 C C3B CYC . . . D 3 135.963 -85.83 -11.538 1 51.49 ? C3B CYC 584 B 1 HETATM 18 C C4B CYC . . . D 3 136.551 -86.969 -10.912 1 52.76 ? C4B CYC 584 B 1 HETATM 19 C CMB CYC . . . D 3 134.569 -85.571 -13.725 1 51.29 ? CMB CYC 584 B 1 HETATM 20 C CAB CYC . . . D 3 135.999 -84.36 -11.069 1 51.92 ? CAB CYC 584 B 1 HETATM 21 C CBB CYC . . . D 3 137.231 -83.621 -11.506 1 51.94 ? CBB CYC 584 B 1 HETATM 22 O OB CYC . . . D 3 137.204 -86.926 -9.841 1 52.78 ? OB CYC 584 B 1 HETATM 23 N NC CYC . . . D 3 129.158 -94.871 -17.645 1 49.34 ? NC CYC 584 B 1 HETATM 24 C C1C CYC . . . D 3 128.135 -94.896 -18.469 1 49.13 ? C1C CYC 584 B 1 HETATM 25 C C2C CYC . . . D 3 127.452 -93.584 -18.712 1 48.78 ? C2C CYC 584 B 1 HETATM 26 C C3C CYC . . . D 3 128.327 -92.689 -17.808 1 48.75 ? C3C CYC 584 B 1 HETATM 27 C C4C CYC . . . D 3 129.357 -93.571 -17.187 1 49.64 ? C4C CYC 584 B 1 HETATM 28 C CMC CYC . . . D 3 127.414 -93.107 -20.159 1 50.04 ? CMC CYC 584 B 1 HETATM 29 C CAC CYC . . . D 3 127.63 -91.928 -16.594 1 48.44 ? CAC CYC 584 B 1 HETATM 30 C CBC CYC . . . D 3 127.171 -90.527 -17.163 1 44.93 ? CBC CYC 584 B 1 HETATM 31 O OC CYC . . . D 3 127.735 -95.958 -19.032 1 50.36 ? OC CYC 584 B 1 HETATM 32 C CHD CYC . . . D 3 130.356 -93.208 -16.259 1 51.37 ? CHD CYC 584 B 1 HETATM 33 N ND CYC . . . D 3 132.369 -93.119 -15.185 1 52.92 ? ND CYC 584 B 1 HETATM 34 C C1D CYC . . . D 3 131.35 -93.88 -15.604 1 52.88 ? C1D CYC 584 B 1 HETATM 35 C C2D CYC . . . D 3 131.585 -95.272 -15.23 1 53.36 ? C2D CYC 584 B 1 HETATM 36 C C3D CYC . . . D 3 132.809 -95.285 -14.572 1 53.82 ? C3D CYC 584 B 1 HETATM 37 C C4D CYC . . . D 3 133.268 -93.905 -14.561 1 53.02 ? C4D CYC 584 B 1 HETATM 38 C CMD CYC . . . D 3 130.717 -96.542 -15.467 1 52 ? CMD CYC 584 B 1 HETATM 39 C CAD CYC . . . D 3 133.605 -96.445 -13.939 1 55.21 ? CAD CYC 584 B 1 HETATM 40 C CBD CYC . . . D 3 134.136 -97.386 -15.013 1 58.42 ? CBD CYC 584 B 1 HETATM 41 C CGD CYC . . . D 3 134.961 -98.575 -14.617 1 61.33 ? CGD CYC 584 B 1 HETATM 42 O O1D CYC . . . D 3 135.378 -99.334 -15.522 1 64.07 ? O1D CYC 584 B 1 HETATM 43 O O2D CYC . . . D 3 135.215 -98.776 -13.399 1 62.09 ? O2D CYC 584 B 1 # _model_server_stats.io_time_ms 72 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 461 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 43 #