data_1ONF # _model_server_result.job_id -ictnZAcdmndABEcVyQbYw _model_server_result.datetime_utc '2025-03-13 17:47:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1onf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":500}' # _entry.id 1ONF # _exptl.entry_id 1ONF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1ONF _cell.length_a 90.64 _cell.length_b 90.64 _cell.length_c 123.32 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1ONF _symmetry.cell_setting ? _symmetry.Int_Tables_number 91 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 2 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_566 x,-y+1,-z+3/2 1 0 0 0 -1 0 0 0 -1 0 90.64 184.98 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 40 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 39 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 45 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 44 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.028 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 83 n n PA O2A FAD sing 84 n n PA O5B FAD sing 85 n n PA O3P FAD sing 86 n n O2A HOA2 FAD sing 87 n n O5B C5B FAD sing 88 n n C5B C4B FAD sing 89 n n C5B H51A FAD sing 90 n n C5B H52A FAD sing 91 n n C4B O4B FAD sing 92 n n C4B C3B FAD sing 93 n n C4B H4B FAD sing 94 n n O4B C1B FAD sing 95 n n C3B O3B FAD sing 96 n n C3B C2B FAD sing 97 n n C3B H3B FAD sing 98 n n O3B HO3A FAD sing 99 n n C2B O2B FAD sing 100 n n C2B C1B FAD sing 101 n n C2B H2B FAD sing 102 n n O2B HO2A FAD sing 103 n n C1B N9A FAD sing 104 n n C1B H1B FAD sing 105 n n N9A C8A FAD sing 106 n y N9A C4A FAD sing 107 n y C8A N7A FAD doub 108 n y C8A H8A FAD sing 109 n n N7A C5A FAD sing 110 n y C5A C6A FAD sing 111 n y C5A C4A FAD doub 112 n y C6A N6A FAD sing 113 n n C6A N1A FAD doub 114 n y N6A H61A FAD sing 115 n n N6A H62A FAD sing 116 n n N1A C2A FAD sing 117 n y C2A N3A FAD doub 118 n y C2A H2A FAD sing 119 n n N3A C4A FAD sing 120 n y N1 C2 FAD sing 121 n n N1 C10 FAD doub 122 n n C2 O2 FAD doub 123 n n C2 N3 FAD sing 124 n n N3 C4 FAD sing 125 n n N3 HN3 FAD sing 126 n n C4 O4 FAD doub 127 n n C4 C4X FAD sing 128 n n C4X N5 FAD doub 129 n n C4X C10 FAD sing 130 n n N5 C5X FAD sing 131 n n C5X C6 FAD doub 132 n y C5X C9A FAD sing 133 n y C6 C7 FAD sing 134 n y C6 H6 FAD sing 135 n n C7 C7M FAD sing 136 n n C7 C8 FAD doub 137 n y C7M HM71 FAD sing 138 n n C7M HM72 FAD sing 139 n n C7M HM73 FAD sing 140 n n C8 C8M FAD sing 141 n n C8 C9 FAD sing 142 n y C8M HM81 FAD sing 143 n n C8M HM82 FAD sing 144 n n C8M HM83 FAD sing 145 n n C9 C9A FAD doub 146 n y C9 H9 FAD sing 147 n n C9A N10 FAD sing 148 n n N10 C10 FAD sing 149 n n N10 C1' FAD sing 150 n n C1' C2' FAD sing 151 n n C1' "H1'1" FAD sing 152 n n C1' "H1'2" FAD sing 153 n n C2' O2' FAD sing 154 n n C2' C3' FAD sing 155 n n C2' H2' FAD sing 156 n n O2' HO2' FAD sing 157 n n C3' O3' FAD sing 158 n n C3' C4' FAD sing 159 n n C3' H3' FAD sing 160 n n O3' HO3' FAD sing 161 n n C4' O4' FAD sing 162 n n C4' C5' FAD sing 163 n n C4' H4' FAD sing 164 n n O4' HO4' FAD sing 165 n n C5' O5' FAD sing 166 n n C5' "H5'1" FAD sing 167 n n C5' "H5'2" FAD sing 168 n n O5' P FAD sing 169 n n P O1P FAD doub 170 n n P O2P FAD sing 171 n n P O3P FAD sing 172 n n O2P HOP2 FAD sing 173 n n # _atom_sites.entry_id 1ONF _atom_sites.fract_transf_matrix[1][1] 0.011033 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011033 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008109 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FAD A 1 500 500 FAD FAD . C 3 HOH A 1 601 601 HOH HOH . C 3 HOH A 2 602 602 HOH HOH . C 3 HOH A 3 603 603 HOH HOH . C 3 HOH A 4 604 604 HOH HOH . C 3 HOH A 5 605 605 HOH HOH . C 3 HOH A 6 606 606 HOH HOH . C 3 HOH A 7 607 607 HOH HOH . C 3 HOH A 8 608 608 HOH HOH . C 3 HOH A 9 609 609 HOH HOH . C 3 HOH A 10 610 610 HOH HOH . C 3 HOH A 11 611 611 HOH HOH . C 3 HOH A 12 612 612 HOH HOH . C 3 HOH A 13 613 613 HOH HOH . C 3 HOH A 14 614 614 HOH HOH . C 3 HOH A 15 615 615 HOH HOH . C 3 HOH A 16 616 616 HOH HOH . C 3 HOH A 17 617 617 HOH HOH . C 3 HOH A 18 618 618 HOH HOH . C 3 HOH A 19 619 619 HOH HOH . C 3 HOH A 20 620 620 HOH HOH . C 3 HOH A 21 621 621 HOH HOH . C 3 HOH A 22 622 622 HOH HOH . C 3 HOH A 23 623 623 HOH HOH . C 3 HOH A 24 624 624 HOH HOH . C 3 HOH A 25 625 625 HOH HOH . C 3 HOH A 26 626 626 HOH HOH . C 3 HOH A 27 627 627 HOH HOH . C 3 HOH A 28 628 628 HOH HOH . C 3 HOH A 29 629 629 HOH HOH . C 3 HOH A 30 630 630 HOH HOH . C 3 HOH A 31 631 631 HOH HOH . C 3 HOH A 32 632 632 HOH HOH . C 3 HOH A 33 633 633 HOH HOH . C 3 HOH A 34 634 634 HOH HOH . C 3 HOH A 35 635 635 HOH HOH . C 3 HOH A 36 636 636 HOH HOH . C 3 HOH A 37 637 637 HOH HOH . C 3 HOH A 38 638 638 HOH HOH . C 3 HOH A 39 639 639 HOH HOH . C 3 HOH A 40 640 640 HOH HOH . C 3 HOH A 41 641 641 HOH HOH . C 3 HOH A 42 642 642 HOH HOH . C 3 HOH A 43 643 643 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . B 2 75.979 69.04 78.437 1 76.78 ? PA FAD 500 A 1 HETATM 2 O O1A FAD . . . B 2 75.127 68.689 77.284 1 75.62 ? O1A FAD 500 A 1 HETATM 3 O O2A FAD . . . B 2 75.553 68.229 79.659 1 75.9 ? O2A FAD 500 A 1 HETATM 4 O O5B FAD . . . B 2 75.891 70.607 78.824 1 78.88 ? O5B FAD 500 A 1 HETATM 5 C C5B FAD . . . B 2 76.452 71.643 78.055 1 79.82 ? C5B FAD 500 A 1 HETATM 6 C C4B FAD . . . B 2 75.773 72.918 78.515 1 80.41 ? C4B FAD 500 A 1 HETATM 7 O O4B FAD . . . B 2 76.164 74.067 77.761 1 81.84 ? O4B FAD 500 A 1 HETATM 8 C C3B FAD . . . B 2 74.286 72.733 78.295 1 79.69 ? C3B FAD 500 A 1 HETATM 9 O O3B FAD . . . B 2 73.596 73.118 79.462 1 81.57 ? O3B FAD 500 A 1 HETATM 10 C C2B FAD . . . B 2 73.977 73.695 77.167 1 78.14 ? C2B FAD 500 A 1 HETATM 11 O O2B FAD . . . B 2 72.693 74.169 77.366 1 70.79 ? O2B FAD 500 A 1 HETATM 12 C C1B FAD . . . B 2 75.002 74.805 77.345 1 80.05 ? C1B FAD 500 A 1 HETATM 13 N N9A FAD . . . B 2 75.24 75.593 76.105 1 79.38 ? N9A FAD 500 A 1 HETATM 14 C C8A FAD . . . B 2 75.236 75.078 74.838 1 82.03 ? C8A FAD 500 A 1 HETATM 15 N N7A FAD . . . B 2 75.514 76.076 73.972 1 82.91 ? N7A FAD 500 A 1 HETATM 16 C C5A FAD . . . B 2 75.702 77.244 74.657 1 82.23 ? C5A FAD 500 A 1 HETATM 17 C C6A FAD . . . B 2 76.034 78.555 74.298 1 81.6 ? C6A FAD 500 A 1 HETATM 18 N N6A FAD . . . B 2 76.214 78.886 73.036 1 82.94 ? N6A FAD 500 A 1 HETATM 19 C C2A FAD . . . B 2 75.993 79.229 76.573 1 81.12 ? C2A FAD 500 A 1 HETATM 20 N N3A FAD . . . B 2 75.692 77.927 76.916 1 80.26 ? N3A FAD 500 A 1 HETATM 21 C C4A FAD . . . B 2 75.539 76.943 75.997 1 79.53 ? C4A FAD 500 A 1 HETATM 22 N N1 FAD . . . B 2 76.102 59.212 80.145 1 74.19 ? N1 FAD 500 A 1 HETATM 23 C C2 FAD . . . B 2 76.384 58.314 81.135 1 74.53 ? C2 FAD 500 A 1 HETATM 24 O O2 FAD . . . B 2 77.466 58.3 81.679 1 75.76 ? O2 FAD 500 A 1 HETATM 25 N N3 FAD . . . B 2 75.47 57.38 81.539 1 75.14 ? N3 FAD 500 A 1 HETATM 26 C C4 FAD . . . B 2 74.236 57.361 80.972 1 75.16 ? C4 FAD 500 A 1 HETATM 27 O O4 FAD . . . B 2 73.433 56.56 81.367 1 74.55 ? O4 FAD 500 A 1 HETATM 28 C C4X FAD . . . B 2 73.915 58.245 79.959 1 75.44 ? C4X FAD 500 A 1 HETATM 29 N N5 FAD . . . B 2 72.665 58.206 79.383 1 74.22 ? N5 FAD 500 A 1 HETATM 30 C C5X FAD . . . B 2 72.344 59.097 78.391 1 72.53 ? C5X FAD 500 A 1 HETATM 31 C C6 FAD . . . B 2 71.084 59.016 77.832 1 70.85 ? C6 FAD 500 A 1 HETATM 32 C C7 FAD . . . B 2 70.72 59.892 76.83 1 70.44 ? C7 FAD 500 A 1 HETATM 33 C C7M FAD . . . B 2 69.348 59.77 76.256 1 72.6 ? C7M FAD 500 A 1 HETATM 34 C C8 FAD . . . B 2 71.616 60.852 76.371 1 71.72 ? C8 FAD 500 A 1 HETATM 35 C C8M FAD . . . B 2 71.227 61.781 75.264 1 63.73 ? C8M FAD 500 A 1 HETATM 36 C C9 FAD . . . B 2 72.901 60.919 76.925 1 71.11 ? C9 FAD 500 A 1 HETATM 37 C C9A FAD . . . B 2 73.279 60.034 77.942 1 71.37 ? C9A FAD 500 A 1 HETATM 38 N N10 FAD . . . B 2 74.539 60.062 78.519 1 72.23 ? N10 FAD 500 A 1 HETATM 39 C C10 FAD . . . B 2 74.858 59.18 79.54 1 75.21 ? C10 FAD 500 A 1 HETATM 40 C C1' FAD . . . B 2 75.655 60.808 77.898 1 69.88 ? C1' FAD 500 A 1 HETATM 41 C C2' FAD . . . B 2 75.569 62.089 78.678 1 69.5 ? C2' FAD 500 A 1 HETATM 42 O O2' FAD . . . B 2 74.359 62.783 78.469 1 73.33 ? O2' FAD 500 A 1 HETATM 43 C C3' FAD . . . B 2 76.705 62.951 78.242 1 73.81 ? C3' FAD 500 A 1 HETATM 44 O O3' FAD . . . B 2 77.832 62.11 78.333 1 79.21 ? O3' FAD 500 A 1 HETATM 45 C C4' FAD . . . B 2 76.741 64.157 79.17 1 72.6 ? C4' FAD 500 A 1 HETATM 46 O O4' FAD . . . B 2 75.485 64.817 79.148 1 74.17 ? O4' FAD 500 A 1 HETATM 47 C C5' FAD . . . B 2 77.794 65.146 78.751 1 70.97 ? C5' FAD 500 A 1 HETATM 48 O O5' FAD . . . B 2 77.39 66.479 79.026 1 72.88 ? O5' FAD 500 A 1 HETATM 49 P P FAD . . . B 2 78.41 67.686 78.808 1 69.63 ? P FAD 500 A 1 HETATM 50 O O1P FAD . . . B 2 79.534 67.162 78.018 1 69.89 ? O1P FAD 500 A 1 HETATM 51 O O2P FAD . . . B 2 78.865 68.359 80.103 1 72.06 ? O2P FAD 500 A 1 HETATM 52 O O3P FAD . . . B 2 77.513 68.752 78.021 1 75.13 ? O3P FAD 500 A 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 549 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 52 #