data_1ONO # _model_server_result.job_id fX-AXpEA-L70ZkennctDlw _model_server_result.datetime_utc '2024-11-30 04:03:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ono # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1001}' # _entry.id 1ONO # _exptl.entry_id 1ONO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.52 _cell.angle_gamma 90 _cell.entry_id 1ONO _cell.length_a 91.388 _cell.length_b 52.249 _cell.length_c 108.327 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1ONO _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 150 A ASP 150 1_555 C MN MN . A MN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.469 ? metalc ? metalc2 A OE2 GLU 152 A GLU 152 1_555 C MN MN . A MN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.363 ? metalc ? metalc3 A OE1 GLU 231 A GLU 231 1_555 C MN MN . A MN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? metalc ? metalc4 C MN MN . A MN 1001 1_555 E O HOH . A HOH 1095 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.212 ? metalc ? metalc5 C MN MN . A MN 1001 1_555 E O HOH . A HOH 1096 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? metalc ? metalc6 C MN MN . A MN 1001 1_555 E O HOH . A HOH 1097 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? metalc ? metalc7 B OD1 ASP 150 B ASP 150 1_555 D MN MN . B MN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.426 ? metalc ? metalc8 B OE2 GLU 152 B GLU 152 1_555 D MN MN . B MN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? metalc ? metalc9 B OE1 GLU 231 B GLU 231 1_555 D MN MN . B MN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.421 ? metalc ? metalc10 D MN MN . B MN 1001 1_555 F O HOH . B HOH 1106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.205 ? metalc ? metalc11 D MN MN . B MN 1001 1_555 F O HOH . B HOH 1107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.198 ? metalc ? metalc12 D MN MN . B MN 1001 1_555 F O HOH . B HOH 1108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1ONO _atom_sites.fract_transf_matrix[1][1] 0.010942 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000482 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019139 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00924 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MN A 1 1001 4 MN MN2 . D 2 MN B 1 1001 4 MN MN2 . E 3 HOH A 1 1002 1 HOH TIP . E 3 HOH A 2 1003 3 HOH TIP . E 3 HOH A 3 1004 4 HOH TIP . E 3 HOH A 4 1005 5 HOH TIP . E 3 HOH A 5 1006 6 HOH TIP . E 3 HOH A 6 1007 7 HOH TIP . E 3 HOH A 7 1008 8 HOH TIP . E 3 HOH A 8 1009 13 HOH TIP . E 3 HOH A 9 1010 17 HOH TIP . E 3 HOH A 10 1011 18 HOH TIP . E 3 HOH A 11 1012 20 HOH TIP . E 3 HOH A 12 1013 21 HOH TIP . E 3 HOH A 13 1014 26 HOH TIP . E 3 HOH A 14 1015 28 HOH TIP . E 3 HOH A 15 1016 29 HOH TIP . E 3 HOH A 16 1017 31 HOH TIP . E 3 HOH A 17 1018 40 HOH TIP . E 3 HOH A 18 1019 42 HOH TIP . E 3 HOH A 19 1020 43 HOH TIP . E 3 HOH A 20 1021 44 HOH TIP . E 3 HOH A 21 1022 45 HOH TIP . E 3 HOH A 22 1023 49 HOH TIP . E 3 HOH A 23 1024 50 HOH TIP . E 3 HOH A 24 1025 51 HOH TIP . E 3 HOH A 25 1026 52 HOH TIP . E 3 HOH A 26 1027 53 HOH TIP . E 3 HOH A 27 1028 63 HOH TIP . E 3 HOH A 28 1029 64 HOH TIP . E 3 HOH A 29 1030 65 HOH TIP . E 3 HOH A 30 1031 67 HOH TIP . E 3 HOH A 31 1032 73 HOH TIP . E 3 HOH A 32 1033 75 HOH TIP . E 3 HOH A 33 1034 77 HOH TIP . E 3 HOH A 34 1035 79 HOH TIP . E 3 HOH A 35 1036 80 HOH TIP . E 3 HOH A 36 1037 81 HOH TIP . E 3 HOH A 37 1038 82 HOH TIP . E 3 HOH A 38 1039 83 HOH TIP . E 3 HOH A 39 1040 84 HOH TIP . E 3 HOH A 40 1041 85 HOH TIP . E 3 HOH A 41 1042 87 HOH TIP . E 3 HOH A 42 1043 88 HOH TIP . E 3 HOH A 43 1044 91 HOH TIP . E 3 HOH A 44 1045 96 HOH TIP . E 3 HOH A 45 1046 97 HOH TIP . E 3 HOH A 46 1047 98 HOH TIP . E 3 HOH A 47 1048 100 HOH TIP . E 3 HOH A 48 1049 101 HOH TIP . E 3 HOH A 49 1050 103 HOH TIP . E 3 HOH A 50 1051 106 HOH TIP . E 3 HOH A 51 1052 107 HOH TIP . E 3 HOH A 52 1053 108 HOH TIP . E 3 HOH A 53 1054 109 HOH TIP . E 3 HOH A 54 1055 111 HOH TIP . E 3 HOH A 55 1056 112 HOH TIP . E 3 HOH A 56 1057 117 HOH TIP . E 3 HOH A 57 1058 119 HOH TIP . E 3 HOH A 58 1059 120 HOH TIP . E 3 HOH A 59 1060 121 HOH TIP . E 3 HOH A 60 1061 122 HOH TIP . E 3 HOH A 61 1062 123 HOH TIP . E 3 HOH A 62 1063 124 HOH TIP . E 3 HOH A 63 1064 126 HOH TIP . E 3 HOH A 64 1065 127 HOH TIP . E 3 HOH A 65 1066 128 HOH TIP . E 3 HOH A 66 1067 138 HOH TIP . E 3 HOH A 67 1068 139 HOH TIP . E 3 HOH A 68 1069 142 HOH TIP . E 3 HOH A 69 1070 143 HOH TIP . E 3 HOH A 70 1071 144 HOH TIP . E 3 HOH A 71 1072 145 HOH TIP . E 3 HOH A 72 1073 147 HOH TIP . E 3 HOH A 73 1074 152 HOH TIP . E 3 HOH A 74 1075 158 HOH TIP . E 3 HOH A 75 1076 159 HOH TIP . E 3 HOH A 76 1077 160 HOH TIP . E 3 HOH A 77 1078 161 HOH TIP . E 3 HOH A 78 1079 162 HOH TIP . E 3 HOH A 79 1080 163 HOH TIP . E 3 HOH A 80 1081 164 HOH TIP . E 3 HOH A 81 1082 166 HOH TIP . E 3 HOH A 82 1083 167 HOH TIP . E 3 HOH A 83 1084 168 HOH TIP . E 3 HOH A 84 1085 170 HOH TIP . E 3 HOH A 85 1086 171 HOH TIP . E 3 HOH A 86 1087 172 HOH TIP . E 3 HOH A 87 1088 187 HOH TIP . E 3 HOH A 88 1089 191 HOH TIP . E 3 HOH A 89 1090 192 HOH TIP . E 3 HOH A 90 1091 193 HOH TIP . E 3 HOH A 91 1092 195 HOH TIP . E 3 HOH A 92 1093 196 HOH TIP . E 3 HOH A 93 1094 197 HOH TIP . E 3 HOH A 94 1095 1 HOH TIP . E 3 HOH A 95 1096 2 HOH TIP . E 3 HOH A 96 1097 3 HOH TIP . F 3 HOH B 1 1002 2 HOH TIP . F 3 HOH B 2 1003 9 HOH TIP . F 3 HOH B 3 1004 10 HOH TIP . F 3 HOH B 4 1005 11 HOH TIP . F 3 HOH B 5 1006 12 HOH TIP . F 3 HOH B 6 1007 14 HOH TIP . F 3 HOH B 7 1008 15 HOH TIP . F 3 HOH B 8 1009 16 HOH TIP . F 3 HOH B 9 1010 19 HOH TIP . F 3 HOH B 10 1011 22 HOH TIP . F 3 HOH B 11 1012 23 HOH TIP . F 3 HOH B 12 1013 24 HOH TIP . F 3 HOH B 13 1014 25 HOH TIP . F 3 HOH B 14 1015 27 HOH TIP . F 3 HOH B 15 1016 30 HOH TIP . F 3 HOH B 16 1017 32 HOH TIP . F 3 HOH B 17 1018 33 HOH TIP . F 3 HOH B 18 1019 34 HOH TIP . F 3 HOH B 19 1020 35 HOH TIP . F 3 HOH B 20 1021 36 HOH TIP . F 3 HOH B 21 1022 37 HOH TIP . F 3 HOH B 22 1023 38 HOH TIP . F 3 HOH B 23 1024 39 HOH TIP . F 3 HOH B 24 1025 41 HOH TIP . F 3 HOH B 25 1026 46 HOH TIP . F 3 HOH B 26 1027 47 HOH TIP . F 3 HOH B 27 1028 48 HOH TIP . F 3 HOH B 28 1029 54 HOH TIP . F 3 HOH B 29 1030 55 HOH TIP . F 3 HOH B 30 1031 56 HOH TIP . F 3 HOH B 31 1032 57 HOH TIP . F 3 HOH B 32 1033 58 HOH TIP . F 3 HOH B 33 1034 59 HOH TIP . F 3 HOH B 34 1035 60 HOH TIP . F 3 HOH B 35 1036 61 HOH TIP . F 3 HOH B 36 1037 62 HOH TIP . F 3 HOH B 37 1038 66 HOH TIP . F 3 HOH B 38 1039 68 HOH TIP . F 3 HOH B 39 1040 69 HOH TIP . F 3 HOH B 40 1041 70 HOH TIP . F 3 HOH B 41 1042 71 HOH TIP . F 3 HOH B 42 1043 72 HOH TIP . F 3 HOH B 43 1044 74 HOH TIP . F 3 HOH B 44 1045 76 HOH TIP . F 3 HOH B 45 1046 78 HOH TIP . F 3 HOH B 46 1047 86 HOH TIP . F 3 HOH B 47 1048 89 HOH TIP . F 3 HOH B 48 1049 90 HOH TIP . F 3 HOH B 49 1050 92 HOH TIP . F 3 HOH B 50 1051 93 HOH TIP . F 3 HOH B 51 1052 94 HOH TIP . F 3 HOH B 52 1053 95 HOH TIP . F 3 HOH B 53 1054 99 HOH TIP . F 3 HOH B 54 1055 102 HOH TIP . F 3 HOH B 55 1056 104 HOH TIP . F 3 HOH B 56 1057 105 HOH TIP . F 3 HOH B 57 1058 110 HOH TIP . F 3 HOH B 58 1059 113 HOH TIP . F 3 HOH B 59 1060 114 HOH TIP . F 3 HOH B 60 1061 115 HOH TIP . F 3 HOH B 61 1062 116 HOH TIP . F 3 HOH B 62 1063 118 HOH TIP . F 3 HOH B 63 1064 125 HOH TIP . F 3 HOH B 64 1065 129 HOH TIP . F 3 HOH B 65 1066 130 HOH TIP . F 3 HOH B 66 1067 131 HOH TIP . F 3 HOH B 67 1068 132 HOH TIP . F 3 HOH B 68 1069 133 HOH TIP . F 3 HOH B 69 1070 134 HOH TIP . F 3 HOH B 70 1071 135 HOH TIP . F 3 HOH B 71 1072 136 HOH TIP . F 3 HOH B 72 1073 137 HOH TIP . F 3 HOH B 73 1074 140 HOH TIP . F 3 HOH B 74 1075 141 HOH TIP . F 3 HOH B 75 1076 146 HOH TIP . F 3 HOH B 76 1077 148 HOH TIP . F 3 HOH B 77 1078 149 HOH TIP . F 3 HOH B 78 1079 150 HOH TIP . F 3 HOH B 79 1080 151 HOH TIP . F 3 HOH B 80 1081 153 HOH TIP . F 3 HOH B 81 1082 154 HOH TIP . F 3 HOH B 82 1083 155 HOH TIP . F 3 HOH B 83 1084 156 HOH TIP . F 3 HOH B 84 1085 157 HOH TIP . F 3 HOH B 85 1086 165 HOH TIP . F 3 HOH B 86 1087 169 HOH TIP . F 3 HOH B 87 1088 173 HOH TIP . F 3 HOH B 88 1089 174 HOH TIP . F 3 HOH B 89 1090 175 HOH TIP . F 3 HOH B 90 1091 176 HOH TIP . F 3 HOH B 91 1092 177 HOH TIP . F 3 HOH B 92 1093 178 HOH TIP . F 3 HOH B 93 1094 179 HOH TIP . F 3 HOH B 94 1095 180 HOH TIP . F 3 HOH B 95 1096 181 HOH TIP . F 3 HOH B 96 1097 182 HOH TIP . F 3 HOH B 97 1098 183 HOH TIP . F 3 HOH B 98 1099 184 HOH TIP . F 3 HOH B 99 1100 185 HOH TIP . F 3 HOH B 100 1101 186 HOH TIP . F 3 HOH B 101 1102 188 HOH TIP . F 3 HOH B 102 1103 189 HOH TIP . F 3 HOH B 103 1104 190 HOH TIP . F 3 HOH B 104 1105 194 HOH TIP . F 3 HOH B 105 1106 1 HOH TIP . F 3 HOH B 106 1107 2 HOH TIP . F 3 HOH B 107 1108 3 HOH TIP . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x 26.661 _atom_site.Cartn_y 6.223 _atom_site.Cartn_z 9.69 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 49.51 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 1001 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 51 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #