data_1ONP
#
_model_server_result.job_id            Phrs019hGTYC859hi3FIpw 
_model_server_result.datetime_utc      '2024-11-26 19:44:37' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1onp 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1001}' 
#
_entry.id    1ONP 
#
_exptl.entry_id    1ONP 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              183.1 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '3-[FORMYL(HYDROXY)AMINO]PROPYLPHOSPHONIC ACID' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          92.11 
_cell.angle_gamma         90 
_cell.entry_id            1ONP 
_cell.length_a            90.754 
_cell.length_b            52.301 
_cell.length_c            107.595 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1ONP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD2 ASP 150 A ASP 150 1_555 C MN MN . A MN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? 
metalc ? metalc2 A OE2 GLU 152 A GLU 152 1_555 C MN MN . A MN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.241 ? 
metalc ? metalc3 A OE1 GLU 231 A GLU 231 1_555 C MN MN . A MN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.206 ? 
metalc ? metalc4 D O2 FOM . A FOM 1001 1_555 C MN MN . A MN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? 
metalc ? metalc5 D O1 FOM . A FOM 1001 1_555 C MN MN . A MN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.401 ? 
metalc ? metalc6 C MN MN . A MN 1002 1_555 G O HOH . A HOH 1085 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? 
metalc ? metalc7 B OD2 ASP 150 B ASP 150 1_555 E MN MN . B MN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.232 ? 
metalc ? metalc8 B OE2 GLU 152 B GLU 152 1_555 E MN MN . B MN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? 
metalc ? metalc9 B OE1 GLU 231 B GLU 231 1_555 E MN MN . B MN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? 
metalc ? metalc10 F O1 FOM . B FOM 1001 1_555 E MN MN . B MN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? 
metalc ? metalc11 F O2 FOM . B FOM 1001 1_555 E MN MN . B MN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? 
metalc ? metalc12 E MN MN . B MN 1002 1_555 H O HOH . B HOH 1064 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.232 ? 
#
_chem_comp.formula           'C4 H10 N O5 P' 
_chem_comp.formula_weight    183.1 
_chem_comp.id                FOM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '3-[FORMYL(HYDROXY)AMINO]PROPYLPHOSPHONIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     FOSMIDOMYCIN 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O2 N1 FOM sing 83 n n 
O2 HO2 FOM sing 84 n n 
N1 C1 FOM sing 85 n n 
N1 C2 FOM sing 86 n n 
C1 O1 FOM doub 87 n n 
C1 H1 FOM sing 88 n n 
C2 C3 FOM sing 89 n n 
C2 H21 FOM sing 90 n n 
C2 H22 FOM sing 91 n n 
C3 C4 FOM sing 92 n n 
C3 H31 FOM sing 93 n n 
C3 H32 FOM sing 94 n n 
C4 PA1 FOM sing 95 n n 
C4 H41 FOM sing 96 n n 
C4 H42 FOM sing 97 n n 
PA1 OP1 FOM doub 98 n n 
PA1 OP2 FOM sing 99 n n 
PA1 OP3 FOM sing 100 n n 
OP2 HP2 FOM sing 101 n n 
OP3 HP3 FOM sing 102 n n 
#
_atom_sites.entry_id                     1ONP 
_atom_sites.fract_transf_matrix[1][1]    0.011019 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000406 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01912 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.0093 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 MN A 1 1002 1 MN MN2 . 
D 3 FOM A 1 1001 1 FOM FOS . 
E 2 MN B 1 1002 1 MN MN2 . 
F 3 FOM B 1 1001 1 FOM FOS . 
G 4 HOH A 1 1003 1 HOH TIP . 
G 4 HOH A 2 1004 2 HOH TIP . 
G 4 HOH A 3 1005 4 HOH TIP . 
G 4 HOH A 4 1006 5 HOH TIP . 
G 4 HOH A 5 1007 8 HOH TIP . 
G 4 HOH A 6 1008 11 HOH TIP . 
G 4 HOH A 7 1009 12 HOH TIP . 
G 4 HOH A 8 1010 13 HOH TIP . 
G 4 HOH A 9 1011 15 HOH TIP . 
G 4 HOH A 10 1012 22 HOH TIP . 
G 4 HOH A 11 1013 23 HOH TIP . 
G 4 HOH A 12 1014 24 HOH TIP . 
G 4 HOH A 13 1015 28 HOH TIP . 
G 4 HOH A 14 1016 30 HOH TIP . 
G 4 HOH A 15 1017 34 HOH TIP . 
G 4 HOH A 16 1018 36 HOH TIP . 
G 4 HOH A 17 1019 38 HOH TIP . 
G 4 HOH A 18 1020 41 HOH TIP . 
G 4 HOH A 19 1021 45 HOH TIP . 
G 4 HOH A 20 1022 46 HOH TIP . 
G 4 HOH A 21 1023 48 HOH TIP . 
G 4 HOH A 22 1024 49 HOH TIP . 
G 4 HOH A 23 1025 50 HOH TIP . 
G 4 HOH A 24 1026 54 HOH TIP . 
G 4 HOH A 25 1027 55 HOH TIP . 
G 4 HOH A 26 1028 56 HOH TIP . 
G 4 HOH A 27 1029 57 HOH TIP . 
G 4 HOH A 28 1030 62 HOH TIP . 
G 4 HOH A 29 1031 63 HOH TIP . 
G 4 HOH A 30 1032 66 HOH TIP . 
G 4 HOH A 31 1033 67 HOH TIP . 
G 4 HOH A 32 1034 68 HOH TIP . 
G 4 HOH A 33 1035 69 HOH TIP . 
G 4 HOH A 34 1036 70 HOH TIP . 
G 4 HOH A 35 1037 71 HOH TIP . 
G 4 HOH A 36 1038 72 HOH TIP . 
G 4 HOH A 37 1039 73 HOH TIP . 
G 4 HOH A 38 1040 74 HOH TIP . 
G 4 HOH A 39 1041 75 HOH TIP . 
G 4 HOH A 40 1042 76 HOH TIP . 
G 4 HOH A 41 1043 77 HOH TIP . 
G 4 HOH A 42 1044 78 HOH TIP . 
G 4 HOH A 43 1045 79 HOH TIP . 
G 4 HOH A 44 1046 80 HOH TIP . 
G 4 HOH A 45 1047 81 HOH TIP . 
G 4 HOH A 46 1048 82 HOH TIP . 
G 4 HOH A 47 1049 83 HOH TIP . 
G 4 HOH A 48 1050 84 HOH TIP . 
G 4 HOH A 49 1051 85 HOH TIP . 
G 4 HOH A 50 1052 86 HOH TIP . 
G 4 HOH A 51 1053 87 HOH TIP . 
G 4 HOH A 52 1054 88 HOH TIP . 
G 4 HOH A 53 1055 89 HOH TIP . 
G 4 HOH A 54 1056 90 HOH TIP . 
G 4 HOH A 55 1057 91 HOH TIP . 
G 4 HOH A 56 1058 92 HOH TIP . 
G 4 HOH A 57 1059 93 HOH TIP . 
G 4 HOH A 58 1060 94 HOH TIP . 
G 4 HOH A 59 1061 95 HOH TIP . 
G 4 HOH A 60 1062 96 HOH TIP . 
G 4 HOH A 61 1063 97 HOH TIP . 
G 4 HOH A 62 1064 98 HOH TIP . 
G 4 HOH A 63 1065 99 HOH TIP . 
G 4 HOH A 64 1066 100 HOH TIP . 
G 4 HOH A 65 1067 101 HOH TIP . 
G 4 HOH A 66 1068 102 HOH TIP . 
G 4 HOH A 67 1069 103 HOH TIP . 
G 4 HOH A 68 1070 110 HOH TIP . 
G 4 HOH A 69 1071 111 HOH TIP . 
G 4 HOH A 70 1072 112 HOH TIP . 
G 4 HOH A 71 1073 113 HOH TIP . 
G 4 HOH A 72 1074 114 HOH TIP . 
G 4 HOH A 73 1075 115 HOH TIP . 
G 4 HOH A 74 1076 116 HOH TIP . 
G 4 HOH A 75 1077 117 HOH TIP . 
G 4 HOH A 76 1078 118 HOH TIP . 
G 4 HOH A 77 1079 119 HOH TIP . 
G 4 HOH A 78 1080 120 HOH TIP . 
G 4 HOH A 79 1081 122 HOH TIP . 
G 4 HOH A 80 1082 124 HOH TIP . 
G 4 HOH A 81 1083 147 HOH TIP . 
G 4 HOH A 82 1084 148 HOH TIP . 
G 4 HOH A 83 1085 2 HOH TIP . 
H 4 HOH B 1 1003 3 HOH TIP . 
H 4 HOH B 2 1004 6 HOH TIP . 
H 4 HOH B 3 1005 7 HOH TIP . 
H 4 HOH B 4 1006 9 HOH TIP . 
H 4 HOH B 5 1007 10 HOH TIP . 
H 4 HOH B 6 1008 14 HOH TIP . 
H 4 HOH B 7 1009 16 HOH TIP . 
H 4 HOH B 8 1010 17 HOH TIP . 
H 4 HOH B 9 1011 18 HOH TIP . 
H 4 HOH B 10 1012 19 HOH TIP . 
H 4 HOH B 11 1013 21 HOH TIP . 
H 4 HOH B 12 1014 25 HOH TIP . 
H 4 HOH B 13 1015 26 HOH TIP . 
H 4 HOH B 14 1016 27 HOH TIP . 
H 4 HOH B 15 1017 29 HOH TIP . 
H 4 HOH B 16 1018 31 HOH TIP . 
H 4 HOH B 17 1019 32 HOH TIP . 
H 4 HOH B 18 1020 33 HOH TIP . 
H 4 HOH B 19 1021 35 HOH TIP . 
H 4 HOH B 20 1022 37 HOH TIP . 
H 4 HOH B 21 1023 39 HOH TIP . 
H 4 HOH B 22 1024 40 HOH TIP . 
H 4 HOH B 23 1025 42 HOH TIP . 
H 4 HOH B 24 1026 43 HOH TIP . 
H 4 HOH B 25 1027 44 HOH TIP . 
H 4 HOH B 26 1028 47 HOH TIP . 
H 4 HOH B 27 1029 51 HOH TIP . 
H 4 HOH B 28 1030 52 HOH TIP . 
H 4 HOH B 29 1031 53 HOH TIP . 
H 4 HOH B 30 1032 59 HOH TIP . 
H 4 HOH B 31 1033 60 HOH TIP . 
H 4 HOH B 32 1034 61 HOH TIP . 
H 4 HOH B 33 1035 104 HOH TIP . 
H 4 HOH B 34 1036 106 HOH TIP . 
H 4 HOH B 35 1037 107 HOH TIP . 
H 4 HOH B 36 1038 108 HOH TIP . 
H 4 HOH B 37 1039 109 HOH TIP . 
H 4 HOH B 38 1040 121 HOH TIP . 
H 4 HOH B 39 1041 123 HOH TIP . 
H 4 HOH B 40 1042 125 HOH TIP . 
H 4 HOH B 41 1043 126 HOH TIP . 
H 4 HOH B 42 1044 127 HOH TIP . 
H 4 HOH B 43 1045 128 HOH TIP . 
H 4 HOH B 44 1046 129 HOH TIP . 
H 4 HOH B 45 1047 130 HOH TIP . 
H 4 HOH B 46 1048 131 HOH TIP . 
H 4 HOH B 47 1049 132 HOH TIP . 
H 4 HOH B 48 1050 133 HOH TIP . 
H 4 HOH B 49 1051 134 HOH TIP . 
H 4 HOH B 50 1052 135 HOH TIP . 
H 4 HOH B 51 1053 136 HOH TIP . 
H 4 HOH B 52 1054 137 HOH TIP . 
H 4 HOH B 53 1055 138 HOH TIP . 
H 4 HOH B 54 1056 139 HOH TIP . 
H 4 HOH B 55 1057 140 HOH TIP . 
H 4 HOH B 56 1058 141 HOH TIP . 
H 4 HOH B 57 1059 142 HOH TIP . 
H 4 HOH B 58 1060 143 HOH TIP . 
H 4 HOH B 59 1061 144 HOH TIP . 
H 4 HOH B 60 1062 145 HOH TIP . 
H 4 HOH B 61 1063 146 HOH TIP . 
H 4 HOH B 62 1064 2 HOH TIP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O2 FOM . . . D 3 6.49 -5.746 34.837 1 77.12 ? O2 FOM 1001 A 1 
HETATM 2 N N1 FOM . . . D 3 6.775 -4.581 35.316 1 75.39 ? N1 FOM 1001 A 1 
HETATM 3 C C1 FOM . . . D 3 6.038 -3.513 34.967 1 69.34 ? C1 FOM 1001 A 1 
HETATM 4 O O1 FOM . . . D 3 5.096 -3.433 34.241 1 56.9 ? O1 FOM 1001 A 1 
HETATM 5 C C2 FOM . . . D 3 7.916 -4.461 36.243 1 78.02 ? C2 FOM 1001 A 1 
HETATM 6 C C3 FOM . . . D 3 7.96 -5.574 37.317 1 76.47 ? C3 FOM 1001 A 1 
HETATM 7 C C4 FOM . . . D 3 9.387 -5.811 37.846 1 78.92 ? C4 FOM 1001 A 1 
HETATM 8 P PA1 FOM . . . D 3 10.357 -6.977 36.911 1 79.06 ? PA1 FOM 1001 A 1 
HETATM 9 O OP1 FOM . . . D 3 9.491 -8.31 36.732 1 87.57 ? OP1 FOM 1001 A 1 
HETATM 10 O OP2 FOM . . . D 3 10.477 -6.419 35.424 1 82.49 ? OP2 FOM 1001 A 1 
HETATM 11 O OP3 FOM . . . D 3 11.822 -7.314 37.422 1 86.9 ? OP3 FOM 1001 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    18 
_model_server_stats.query_time_ms           278 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           11 
#