data_1ONP # _model_server_result.job_id QHaAJDbW2m51swsCO151NA _model_server_result.datetime_utc '2024-11-14 22:45:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1onp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1002}' # _entry.id 1ONP # _exptl.entry_id 1ONP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.11 _cell.angle_gamma 90 _cell.entry_id 1ONP _cell.length_a 90.754 _cell.length_b 52.301 _cell.length_c 107.595 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1ONP _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 150 A ASP 150 1_555 C MN MN . A MN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? metalc ? metalc2 A OE2 GLU 152 A GLU 152 1_555 C MN MN . A MN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.241 ? metalc ? metalc3 A OE1 GLU 231 A GLU 231 1_555 C MN MN . A MN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.206 ? metalc ? metalc4 D O2 FOM . A FOM 1001 1_555 C MN MN . A MN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? metalc ? metalc5 D O1 FOM . A FOM 1001 1_555 C MN MN . A MN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.401 ? metalc ? metalc6 C MN MN . A MN 1002 1_555 G O HOH . A HOH 1085 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? metalc ? metalc7 B OD2 ASP 150 B ASP 150 1_555 E MN MN . B MN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.232 ? metalc ? metalc8 B OE2 GLU 152 B GLU 152 1_555 E MN MN . B MN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? metalc ? metalc9 B OE1 GLU 231 B GLU 231 1_555 E MN MN . B MN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? metalc ? metalc10 F O1 FOM . B FOM 1001 1_555 E MN MN . B MN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc11 F O2 FOM . B FOM 1001 1_555 E MN MN . B MN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? metalc ? metalc12 E MN MN . B MN 1002 1_555 H O HOH . B HOH 1064 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.232 ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1ONP _atom_sites.fract_transf_matrix[1][1] 0.011019 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000406 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01912 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0093 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MN A 1 1002 1 MN MN2 . D 3 FOM A 1 1001 1 FOM FOS . E 2 MN B 1 1002 1 MN MN2 . F 3 FOM B 1 1001 1 FOM FOS . G 4 HOH A 1 1003 1 HOH TIP . G 4 HOH A 2 1004 2 HOH TIP . G 4 HOH A 3 1005 4 HOH TIP . G 4 HOH A 4 1006 5 HOH TIP . G 4 HOH A 5 1007 8 HOH TIP . G 4 HOH A 6 1008 11 HOH TIP . G 4 HOH A 7 1009 12 HOH TIP . G 4 HOH A 8 1010 13 HOH TIP . G 4 HOH A 9 1011 15 HOH TIP . G 4 HOH A 10 1012 22 HOH TIP . G 4 HOH A 11 1013 23 HOH TIP . G 4 HOH A 12 1014 24 HOH TIP . G 4 HOH A 13 1015 28 HOH TIP . G 4 HOH A 14 1016 30 HOH TIP . G 4 HOH A 15 1017 34 HOH TIP . G 4 HOH A 16 1018 36 HOH TIP . G 4 HOH A 17 1019 38 HOH TIP . G 4 HOH A 18 1020 41 HOH TIP . G 4 HOH A 19 1021 45 HOH TIP . G 4 HOH A 20 1022 46 HOH TIP . G 4 HOH A 21 1023 48 HOH TIP . G 4 HOH A 22 1024 49 HOH TIP . G 4 HOH A 23 1025 50 HOH TIP . G 4 HOH A 24 1026 54 HOH TIP . G 4 HOH A 25 1027 55 HOH TIP . G 4 HOH A 26 1028 56 HOH TIP . G 4 HOH A 27 1029 57 HOH TIP . G 4 HOH A 28 1030 62 HOH TIP . G 4 HOH A 29 1031 63 HOH TIP . G 4 HOH A 30 1032 66 HOH TIP . G 4 HOH A 31 1033 67 HOH TIP . G 4 HOH A 32 1034 68 HOH TIP . G 4 HOH A 33 1035 69 HOH TIP . G 4 HOH A 34 1036 70 HOH TIP . G 4 HOH A 35 1037 71 HOH TIP . G 4 HOH A 36 1038 72 HOH TIP . G 4 HOH A 37 1039 73 HOH TIP . G 4 HOH A 38 1040 74 HOH TIP . G 4 HOH A 39 1041 75 HOH TIP . G 4 HOH A 40 1042 76 HOH TIP . G 4 HOH A 41 1043 77 HOH TIP . G 4 HOH A 42 1044 78 HOH TIP . G 4 HOH A 43 1045 79 HOH TIP . G 4 HOH A 44 1046 80 HOH TIP . G 4 HOH A 45 1047 81 HOH TIP . G 4 HOH A 46 1048 82 HOH TIP . G 4 HOH A 47 1049 83 HOH TIP . G 4 HOH A 48 1050 84 HOH TIP . G 4 HOH A 49 1051 85 HOH TIP . G 4 HOH A 50 1052 86 HOH TIP . G 4 HOH A 51 1053 87 HOH TIP . G 4 HOH A 52 1054 88 HOH TIP . G 4 HOH A 53 1055 89 HOH TIP . G 4 HOH A 54 1056 90 HOH TIP . G 4 HOH A 55 1057 91 HOH TIP . G 4 HOH A 56 1058 92 HOH TIP . G 4 HOH A 57 1059 93 HOH TIP . G 4 HOH A 58 1060 94 HOH TIP . G 4 HOH A 59 1061 95 HOH TIP . G 4 HOH A 60 1062 96 HOH TIP . G 4 HOH A 61 1063 97 HOH TIP . G 4 HOH A 62 1064 98 HOH TIP . G 4 HOH A 63 1065 99 HOH TIP . G 4 HOH A 64 1066 100 HOH TIP . G 4 HOH A 65 1067 101 HOH TIP . G 4 HOH A 66 1068 102 HOH TIP . G 4 HOH A 67 1069 103 HOH TIP . G 4 HOH A 68 1070 110 HOH TIP . G 4 HOH A 69 1071 111 HOH TIP . G 4 HOH A 70 1072 112 HOH TIP . G 4 HOH A 71 1073 113 HOH TIP . G 4 HOH A 72 1074 114 HOH TIP . G 4 HOH A 73 1075 115 HOH TIP . G 4 HOH A 74 1076 116 HOH TIP . G 4 HOH A 75 1077 117 HOH TIP . G 4 HOH A 76 1078 118 HOH TIP . G 4 HOH A 77 1079 119 HOH TIP . G 4 HOH A 78 1080 120 HOH TIP . G 4 HOH A 79 1081 122 HOH TIP . G 4 HOH A 80 1082 124 HOH TIP . G 4 HOH A 81 1083 147 HOH TIP . G 4 HOH A 82 1084 148 HOH TIP . G 4 HOH A 83 1085 2 HOH TIP . H 4 HOH B 1 1003 3 HOH TIP . H 4 HOH B 2 1004 6 HOH TIP . H 4 HOH B 3 1005 7 HOH TIP . H 4 HOH B 4 1006 9 HOH TIP . H 4 HOH B 5 1007 10 HOH TIP . H 4 HOH B 6 1008 14 HOH TIP . H 4 HOH B 7 1009 16 HOH TIP . H 4 HOH B 8 1010 17 HOH TIP . H 4 HOH B 9 1011 18 HOH TIP . H 4 HOH B 10 1012 19 HOH TIP . H 4 HOH B 11 1013 21 HOH TIP . H 4 HOH B 12 1014 25 HOH TIP . H 4 HOH B 13 1015 26 HOH TIP . H 4 HOH B 14 1016 27 HOH TIP . H 4 HOH B 15 1017 29 HOH TIP . H 4 HOH B 16 1018 31 HOH TIP . H 4 HOH B 17 1019 32 HOH TIP . H 4 HOH B 18 1020 33 HOH TIP . H 4 HOH B 19 1021 35 HOH TIP . H 4 HOH B 20 1022 37 HOH TIP . H 4 HOH B 21 1023 39 HOH TIP . H 4 HOH B 22 1024 40 HOH TIP . H 4 HOH B 23 1025 42 HOH TIP . H 4 HOH B 24 1026 43 HOH TIP . H 4 HOH B 25 1027 44 HOH TIP . H 4 HOH B 26 1028 47 HOH TIP . H 4 HOH B 27 1029 51 HOH TIP . H 4 HOH B 28 1030 52 HOH TIP . H 4 HOH B 29 1031 53 HOH TIP . H 4 HOH B 30 1032 59 HOH TIP . H 4 HOH B 31 1033 60 HOH TIP . H 4 HOH B 32 1034 61 HOH TIP . H 4 HOH B 33 1035 104 HOH TIP . H 4 HOH B 34 1036 106 HOH TIP . H 4 HOH B 35 1037 107 HOH TIP . H 4 HOH B 36 1038 108 HOH TIP . H 4 HOH B 37 1039 109 HOH TIP . H 4 HOH B 38 1040 121 HOH TIP . H 4 HOH B 39 1041 123 HOH TIP . H 4 HOH B 40 1042 125 HOH TIP . H 4 HOH B 41 1043 126 HOH TIP . H 4 HOH B 42 1044 127 HOH TIP . H 4 HOH B 43 1045 128 HOH TIP . H 4 HOH B 44 1046 129 HOH TIP . H 4 HOH B 45 1047 130 HOH TIP . H 4 HOH B 46 1048 131 HOH TIP . H 4 HOH B 47 1049 132 HOH TIP . H 4 HOH B 48 1050 133 HOH TIP . H 4 HOH B 49 1051 134 HOH TIP . H 4 HOH B 50 1052 135 HOH TIP . H 4 HOH B 51 1053 136 HOH TIP . H 4 HOH B 52 1054 137 HOH TIP . H 4 HOH B 53 1055 138 HOH TIP . H 4 HOH B 54 1056 139 HOH TIP . H 4 HOH B 55 1057 140 HOH TIP . H 4 HOH B 56 1058 141 HOH TIP . H 4 HOH B 57 1059 142 HOH TIP . H 4 HOH B 58 1060 143 HOH TIP . H 4 HOH B 59 1061 144 HOH TIP . H 4 HOH B 60 1062 145 HOH TIP . H 4 HOH B 61 1063 146 HOH TIP . H 4 HOH B 62 1064 2 HOH TIP . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 2 _atom_site.Cartn_x 26.223 _atom_site.Cartn_y 6.491 _atom_site.Cartn_z 9.356 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 62.38 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 1002 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 216 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #