data_1OO0 # _model_server_result.job_id 1mEwsrZr8R7eqRHXIl5pUg _model_server_result.datetime_utc '2024-11-28 06:07:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1oo0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":601}' # _entry.id 1OO0 # _exptl.entry_id 1OO0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.9 _cell.angle_gamma 90 _cell.entry_id 1OO0 _cell.length_a 105.027 _cell.length_b 52.387 _cell.length_c 52.862 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1OO0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 H N N ? 6 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 38 A ASN 38 1_555 C SR SR . A SR 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.468 ? metalc ? metalc2 A O ASN 40 A ASN 40 1_555 C SR SR . A SR 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.52 ? metalc ? metalc3 A OD1 ASN 43 A ASN 43 1_555 C SR SR . A SR 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.561 ? metalc ? metalc4 A O ASN 43 A ASN 43 1_555 C SR SR . A SR 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.513 ? metalc ? metalc5 A O THR 45 A THR 45 1_555 C SR SR . A SR 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.476 ? metalc ? metalc6 C SR SR . A SR 401 1_555 J O HOH . A HOH 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.212 ? metalc ? metalc7 C SR SR . A SR 401 1_555 J O HOH . A HOH 626 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.62 ? metalc ? metalc8 C SR SR . A SR 401 1_555 J O HOH . A HOH 690 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.605 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 138 n n C1 C2 GOL sing 139 n n C1 H11 GOL sing 140 n n C1 H12 GOL sing 141 n n O1 HO1 GOL sing 142 n n C2 O2 GOL sing 143 n n C2 C3 GOL sing 144 n n C2 H2 GOL sing 145 n n O2 HO2 GOL sing 146 n n C3 O3 GOL sing 147 n n C3 H31 GOL sing 148 n n C3 H32 GOL sing 149 n n O3 HO3 GOL sing 150 n n # _atom_sites.entry_id 1OO0 _atom_sites.fract_transf_matrix[1][1] 0.009521 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002533 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019089 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019575 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 SR A 1 401 1 SR SR2 . D 4 BME A 1 301 1 BME BME . E 4 BME A 1 302 2 BME BME . F 5 MPD A 1 501 1 MPD MPD . G 5 MPD A 1 502 2 MPD MPD . H 6 GOL A 1 602 2 GOL GOL . I 6 GOL B 1 601 1 GOL GOL . J 7 HOH A 1 603 1 HOH TIP . J 7 HOH A 2 604 3 HOH TIP . J 7 HOH A 3 605 4 HOH TIP . J 7 HOH A 4 606 5 HOH TIP . J 7 HOH A 5 607 6 HOH TIP . J 7 HOH A 6 608 7 HOH TIP . J 7 HOH A 7 609 10 HOH TIP . J 7 HOH A 8 610 11 HOH TIP . J 7 HOH A 9 611 13 HOH TIP . J 7 HOH A 10 612 14 HOH TIP . J 7 HOH A 11 613 17 HOH TIP . J 7 HOH A 12 614 20 HOH TIP . J 7 HOH A 13 615 24 HOH TIP . J 7 HOH A 14 616 26 HOH TIP . J 7 HOH A 15 617 29 HOH TIP . J 7 HOH A 16 618 30 HOH TIP . J 7 HOH A 17 619 36 HOH TIP . J 7 HOH A 18 620 42 HOH TIP . J 7 HOH A 19 621 48 HOH TIP . J 7 HOH A 20 622 53 HOH TIP . J 7 HOH A 21 623 62 HOH TIP . J 7 HOH A 22 624 63 HOH TIP . J 7 HOH A 23 625 64 HOH TIP . J 7 HOH A 24 626 66 HOH TIP . J 7 HOH A 25 627 67 HOH TIP . J 7 HOH A 26 628 74 HOH TIP . J 7 HOH A 27 629 75 HOH TIP . J 7 HOH A 28 630 82 HOH TIP . J 7 HOH A 29 631 84 HOH TIP . J 7 HOH A 30 632 85 HOH TIP . J 7 HOH A 31 633 87 HOH TIP . J 7 HOH A 32 634 88 HOH TIP . J 7 HOH A 33 635 91 HOH TIP . J 7 HOH A 34 636 93 HOH TIP . J 7 HOH A 35 637 94 HOH TIP . J 7 HOH A 36 638 95 HOH TIP . J 7 HOH A 37 639 97 HOH TIP . J 7 HOH A 38 640 98 HOH TIP . J 7 HOH A 39 641 99 HOH TIP . J 7 HOH A 40 642 100 HOH TIP . J 7 HOH A 41 643 102 HOH TIP . J 7 HOH A 42 644 104 HOH TIP . J 7 HOH A 43 645 105 HOH TIP . J 7 HOH A 44 646 107 HOH TIP . J 7 HOH A 45 647 108 HOH TIP . J 7 HOH A 46 648 110 HOH TIP . J 7 HOH A 47 649 113 HOH TIP . J 7 HOH A 48 650 114 HOH TIP . J 7 HOH A 49 651 115 HOH TIP . J 7 HOH A 50 652 118 HOH TIP . J 7 HOH A 51 653 119 HOH TIP . J 7 HOH A 52 654 120 HOH TIP . J 7 HOH A 53 655 121 HOH TIP . J 7 HOH A 54 656 122 HOH TIP . J 7 HOH A 55 657 124 HOH TIP . J 7 HOH A 56 658 125 HOH TIP . J 7 HOH A 57 659 127 HOH TIP . J 7 HOH A 58 660 128 HOH TIP . J 7 HOH A 59 661 129 HOH TIP . J 7 HOH A 60 662 130 HOH TIP . J 7 HOH A 61 663 131 HOH TIP . J 7 HOH A 62 664 134 HOH TIP . J 7 HOH A 63 665 135 HOH TIP . J 7 HOH A 64 666 136 HOH TIP . J 7 HOH A 65 667 139 HOH TIP . J 7 HOH A 66 668 140 HOH TIP . J 7 HOH A 67 669 141 HOH TIP . J 7 HOH A 68 670 145 HOH TIP . J 7 HOH A 69 671 146 HOH TIP . J 7 HOH A 70 672 149 HOH TIP . J 7 HOH A 71 673 150 HOH TIP . J 7 HOH A 72 674 153 HOH TIP . J 7 HOH A 73 675 154 HOH TIP . J 7 HOH A 74 676 155 HOH TIP . J 7 HOH A 75 677 156 HOH TIP . J 7 HOH A 76 678 157 HOH TIP . J 7 HOH A 77 679 158 HOH TIP . J 7 HOH A 78 680 160 HOH TIP . J 7 HOH A 79 681 163 HOH TIP . J 7 HOH A 80 682 164 HOH TIP . J 7 HOH A 81 683 204 HOH TIP . J 7 HOH A 82 684 205 HOH TIP . J 7 HOH A 83 685 206 HOH TIP . J 7 HOH A 84 686 207 HOH TIP . J 7 HOH A 85 687 209 HOH TIP . J 7 HOH A 86 688 210 HOH TIP . J 7 HOH A 87 689 211 HOH TIP . J 7 HOH A 88 690 212 HOH TIP . J 7 HOH A 89 691 213 HOH TIP . J 7 HOH A 90 692 215 HOH TIP . J 7 HOH A 91 693 216 HOH TIP . K 7 HOH B 1 602 2 HOH TIP . K 7 HOH B 2 603 8 HOH TIP . K 7 HOH B 3 604 9 HOH TIP . K 7 HOH B 4 605 12 HOH TIP . K 7 HOH B 5 606 15 HOH TIP . K 7 HOH B 6 607 16 HOH TIP . K 7 HOH B 7 608 19 HOH TIP . K 7 HOH B 8 609 21 HOH TIP . K 7 HOH B 9 610 22 HOH TIP . K 7 HOH B 10 611 31 HOH TIP . K 7 HOH B 11 612 32 HOH TIP . K 7 HOH B 12 613 38 HOH TIP . K 7 HOH B 13 614 39 HOH TIP . K 7 HOH B 14 615 47 HOH TIP . K 7 HOH B 15 616 65 HOH TIP . K 7 HOH B 16 617 68 HOH TIP . K 7 HOH B 17 618 69 HOH TIP . K 7 HOH B 18 619 70 HOH TIP . K 7 HOH B 19 620 71 HOH TIP . K 7 HOH B 20 621 78 HOH TIP . K 7 HOH B 21 622 83 HOH TIP . K 7 HOH B 22 623 86 HOH TIP . K 7 HOH B 23 624 89 HOH TIP . K 7 HOH B 24 625 92 HOH TIP . K 7 HOH B 25 626 96 HOH TIP . K 7 HOH B 26 627 101 HOH TIP . K 7 HOH B 27 628 106 HOH TIP . K 7 HOH B 28 629 109 HOH TIP . K 7 HOH B 29 630 111 HOH TIP . K 7 HOH B 30 631 112 HOH TIP . K 7 HOH B 31 632 116 HOH TIP . K 7 HOH B 32 633 132 HOH TIP . K 7 HOH B 33 634 137 HOH TIP . K 7 HOH B 34 635 142 HOH TIP . K 7 HOH B 35 636 144 HOH TIP . K 7 HOH B 36 637 147 HOH TIP . K 7 HOH B 37 638 148 HOH TIP . K 7 HOH B 38 639 151 HOH TIP . K 7 HOH B 39 640 152 HOH TIP . K 7 HOH B 40 641 161 HOH TIP . K 7 HOH B 41 642 162 HOH TIP . K 7 HOH B 42 643 165 HOH TIP . K 7 HOH B 43 644 166 HOH TIP . K 7 HOH B 44 645 201 HOH TIP . K 7 HOH B 45 646 202 HOH TIP . K 7 HOH B 46 647 203 HOH TIP . K 7 HOH B 47 648 208 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . I 6 30.406 33.812 -10.291 1 45.78 ? C1 GOL 601 B 1 HETATM 2 O O1 GOL . . . I 6 31.926 33.808 -9.737 1 52.92 ? O1 GOL 601 B 1 HETATM 3 C C2 GOL . . . I 6 29.35 33.119 -9.724 1 31.87 ? C2 GOL 601 B 1 HETATM 4 O O2 GOL . . . I 6 29.099 33.557 -8.489 1 49.33 ? O2 GOL 601 B 1 HETATM 5 C C3 GOL . . . I 6 28.967 32.239 -10.453 1 38.98 ? C3 GOL 601 B 1 HETATM 6 O O3 GOL . . . I 6 28.807 31.265 -11.665 1 45.4 ? O3 GOL 601 B 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 243 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 6 #