data_1OO6 # _model_server_result.job_id ksNgmKq-WdrMox6uDccgbA _model_server_result.datetime_utc '2024-11-16 04:57:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1oo6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":219}' # _entry.id 1OO6 # _exptl.entry_id 1OO6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 351.143 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-[BIS-2(CHLORO-ETHYL)-AMINO]-2,4-DINTRO-BENZAMIDE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1OO6 _cell.length_a 57.69 _cell.length_b 57.69 _cell.length_c 266.67 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1OO6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N # _chem_comp.formula 'C11 H12 Cl2 N4 O5' _chem_comp.formula_weight 351.143 _chem_comp.id SN2 _chem_comp.mon_nstd_flag . _chem_comp.name 5-[BIS-2(CHLORO-ETHYL)-AMINO]-2,4-DINTRO-BENZAMIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 SN2 doub 344 n y C1 C6 SN2 sing 345 n y C1 N3 SN2 sing 346 n n C2 C3 SN2 sing 347 n y C2 HC2 SN2 sing 348 n n C3 C4 SN2 doub 349 n y C3 C13 SN2 sing 350 n n C4 C5 SN2 sing 351 n y C4 N1 SN2 sing 352 n n C5 C6 SN2 doub 353 n y C5 HC5 SN2 sing 354 n n C6 N2 SN2 sing 355 n n C7 C9 SN2 sing 356 n n C7 N3 SN2 sing 357 n n C7 HC71 SN2 sing 358 n n C7 HC72 SN2 sing 359 n n C8 C10 SN2 sing 360 n n C8 N3 SN2 sing 361 n n C8 HC81 SN2 sing 362 n n C8 HC82 SN2 sing 363 n n C9 CL2 SN2 sing 364 n n C9 HC91 SN2 sing 365 n n C9 HC92 SN2 sing 366 n n C10 CL1 SN2 sing 367 n n C10 H101 SN2 sing 368 n n C10 H102 SN2 sing 369 n n C13 O4 SN2 doub 370 n n C13 N4 SN2 sing 371 n n O1 N1 SN2 sing 372 n n O2 N2 SN2 doub 373 n n O3 N1 SN2 doub 374 n n O5 N2 SN2 sing 375 n n N4 HN41 SN2 sing 376 n n N4 HN42 SN2 sing 377 n n # _atom_sites.entry_id 1OO6 _atom_sites.fract_transf_matrix[1][1] 0.017334 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017334 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00375 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FMN A 1 218 218 FMN FMN . D 3 SN2 A 1 219 219 SN2 SN1 . E 3 SN2 A 1 221 219 SN2 SN1 . F 2 FMN B 1 220 218 FMN FMN . G 4 HOH A 1 222 1 HOH TIP . G 4 HOH A 2 223 2 HOH TIP . G 4 HOH A 3 224 3 HOH TIP . G 4 HOH A 4 225 4 HOH TIP . G 4 HOH A 5 226 6 HOH TIP . G 4 HOH A 6 227 7 HOH TIP . G 4 HOH A 7 228 10 HOH TIP . G 4 HOH A 8 229 11 HOH TIP . G 4 HOH A 9 230 13 HOH TIP . G 4 HOH A 10 231 19 HOH TIP . G 4 HOH A 11 232 20 HOH TIP . G 4 HOH A 12 233 23 HOH TIP . G 4 HOH A 13 234 24 HOH TIP . G 4 HOH A 14 235 25 HOH TIP . G 4 HOH A 15 236 30 HOH TIP . G 4 HOH A 16 237 31 HOH TIP . G 4 HOH A 17 238 32 HOH TIP . G 4 HOH A 18 239 35 HOH TIP . G 4 HOH A 19 240 36 HOH TIP . G 4 HOH A 20 241 37 HOH TIP . G 4 HOH A 21 242 38 HOH TIP . G 4 HOH A 22 243 39 HOH TIP . G 4 HOH A 23 244 41 HOH TIP . G 4 HOH A 24 245 43 HOH TIP . G 4 HOH A 25 246 45 HOH TIP . G 4 HOH A 26 247 46 HOH TIP . G 4 HOH A 27 248 48 HOH TIP . G 4 HOH A 28 249 51 HOH TIP . G 4 HOH A 29 250 52 HOH TIP . G 4 HOH A 30 251 54 HOH TIP . G 4 HOH A 31 252 55 HOH TIP . G 4 HOH A 32 253 58 HOH TIP . G 4 HOH A 33 254 60 HOH TIP . G 4 HOH A 34 255 61 HOH TIP . G 4 HOH A 35 256 63 HOH TIP . G 4 HOH A 36 257 64 HOH TIP . G 4 HOH A 37 258 67 HOH TIP . G 4 HOH A 38 259 69 HOH TIP . G 4 HOH A 39 260 72 HOH TIP . G 4 HOH A 40 261 77 HOH TIP . G 4 HOH A 41 262 78 HOH TIP . G 4 HOH A 42 263 80 HOH TIP . G 4 HOH A 43 264 81 HOH TIP . G 4 HOH A 44 265 82 HOH TIP . G 4 HOH A 45 266 83 HOH TIP . G 4 HOH A 46 267 85 HOH TIP . G 4 HOH A 47 268 86 HOH TIP . G 4 HOH A 48 269 87 HOH TIP . G 4 HOH A 49 270 90 HOH TIP . G 4 HOH A 50 271 91 HOH TIP . G 4 HOH A 51 272 93 HOH TIP . G 4 HOH A 52 273 94 HOH TIP . G 4 HOH A 53 274 95 HOH TIP . G 4 HOH A 54 275 96 HOH TIP . G 4 HOH A 55 276 97 HOH TIP . G 4 HOH A 56 277 98 HOH TIP . G 4 HOH A 57 278 100 HOH TIP . G 4 HOH A 58 279 102 HOH TIP . G 4 HOH A 59 280 103 HOH TIP . G 4 HOH A 60 281 104 HOH TIP . G 4 HOH A 61 282 105 HOH TIP . G 4 HOH A 62 283 107 HOH TIP . G 4 HOH A 63 284 108 HOH TIP . G 4 HOH A 64 285 111 HOH TIP . G 4 HOH A 65 286 112 HOH TIP . G 4 HOH A 66 287 117 HOH TIP . G 4 HOH A 67 288 119 HOH TIP . G 4 HOH A 68 289 121 HOH TIP . G 4 HOH A 69 290 122 HOH TIP . G 4 HOH A 70 291 123 HOH TIP . G 4 HOH A 71 292 125 HOH TIP . G 4 HOH A 72 293 127 HOH TIP . G 4 HOH A 73 294 128 HOH TIP . G 4 HOH A 74 295 129 HOH TIP . G 4 HOH A 75 296 130 HOH TIP . G 4 HOH A 76 297 131 HOH TIP . G 4 HOH A 77 298 132 HOH TIP . G 4 HOH A 78 299 133 HOH TIP . G 4 HOH A 79 300 134 HOH TIP . G 4 HOH A 80 301 135 HOH TIP . G 4 HOH A 81 302 137 HOH TIP . G 4 HOH A 82 303 138 HOH TIP . G 4 HOH A 83 304 141 HOH TIP . G 4 HOH A 84 305 143 HOH TIP . G 4 HOH A 85 306 145 HOH TIP . G 4 HOH A 86 307 146 HOH TIP . G 4 HOH A 87 308 147 HOH TIP . G 4 HOH A 88 309 149 HOH TIP . G 4 HOH A 89 310 150 HOH TIP . G 4 HOH A 90 311 153 HOH TIP . G 4 HOH A 91 312 154 HOH TIP . G 4 HOH A 92 313 160 HOH TIP . G 4 HOH A 93 314 166 HOH TIP . G 4 HOH A 94 315 167 HOH TIP . G 4 HOH A 95 316 168 HOH TIP . G 4 HOH A 96 317 169 HOH TIP . G 4 HOH A 97 318 178 HOH TIP . G 4 HOH A 98 319 179 HOH TIP . G 4 HOH A 99 320 182 HOH TIP . G 4 HOH A 100 321 183 HOH TIP . G 4 HOH A 101 322 185 HOH TIP . H 4 HOH B 1 221 5 HOH TIP . H 4 HOH B 2 222 8 HOH TIP . H 4 HOH B 3 223 9 HOH TIP . H 4 HOH B 4 224 12 HOH TIP . H 4 HOH B 5 225 14 HOH TIP . H 4 HOH B 6 226 15 HOH TIP . H 4 HOH B 7 227 16 HOH TIP . H 4 HOH B 8 228 18 HOH TIP . H 4 HOH B 9 229 21 HOH TIP . H 4 HOH B 10 230 22 HOH TIP . H 4 HOH B 11 231 26 HOH TIP . H 4 HOH B 12 232 27 HOH TIP . H 4 HOH B 13 233 28 HOH TIP . H 4 HOH B 14 234 29 HOH TIP . H 4 HOH B 15 235 33 HOH TIP . H 4 HOH B 16 236 34 HOH TIP . H 4 HOH B 17 237 40 HOH TIP . H 4 HOH B 18 238 42 HOH TIP . H 4 HOH B 19 239 44 HOH TIP . H 4 HOH B 20 240 47 HOH TIP . H 4 HOH B 21 241 49 HOH TIP . H 4 HOH B 22 242 50 HOH TIP . H 4 HOH B 23 243 53 HOH TIP . H 4 HOH B 24 244 56 HOH TIP . H 4 HOH B 25 245 57 HOH TIP . H 4 HOH B 26 246 59 HOH TIP . H 4 HOH B 27 247 62 HOH TIP . H 4 HOH B 28 248 65 HOH TIP . H 4 HOH B 29 249 66 HOH TIP . H 4 HOH B 30 250 68 HOH TIP . H 4 HOH B 31 251 70 HOH TIP . H 4 HOH B 32 252 73 HOH TIP . H 4 HOH B 33 253 74 HOH TIP . H 4 HOH B 34 254 75 HOH TIP . H 4 HOH B 35 255 79 HOH TIP . H 4 HOH B 36 256 84 HOH TIP . H 4 HOH B 37 257 88 HOH TIP . H 4 HOH B 38 258 89 HOH TIP . H 4 HOH B 39 259 92 HOH TIP . H 4 HOH B 40 260 99 HOH TIP . H 4 HOH B 41 261 101 HOH TIP . H 4 HOH B 42 262 106 HOH TIP . H 4 HOH B 43 263 110 HOH TIP . H 4 HOH B 44 264 113 HOH TIP . H 4 HOH B 45 265 114 HOH TIP . H 4 HOH B 46 266 115 HOH TIP . H 4 HOH B 47 267 116 HOH TIP . H 4 HOH B 48 268 118 HOH TIP . H 4 HOH B 49 269 120 HOH TIP . H 4 HOH B 50 270 124 HOH TIP . H 4 HOH B 51 271 126 HOH TIP . H 4 HOH B 52 272 136 HOH TIP . H 4 HOH B 53 273 139 HOH TIP . H 4 HOH B 54 274 140 HOH TIP . H 4 HOH B 55 275 142 HOH TIP . H 4 HOH B 56 276 144 HOH TIP . H 4 HOH B 57 277 148 HOH TIP . H 4 HOH B 58 278 151 HOH TIP . H 4 HOH B 59 279 152 HOH TIP . H 4 HOH B 60 280 155 HOH TIP . H 4 HOH B 61 281 156 HOH TIP . H 4 HOH B 62 282 157 HOH TIP . H 4 HOH B 63 283 158 HOH TIP . H 4 HOH B 64 284 159 HOH TIP . H 4 HOH B 65 285 162 HOH TIP . H 4 HOH B 66 286 163 HOH TIP . H 4 HOH B 67 287 164 HOH TIP . H 4 HOH B 68 288 165 HOH TIP . H 4 HOH B 69 289 170 HOH TIP . H 4 HOH B 70 290 171 HOH TIP . H 4 HOH B 71 291 173 HOH TIP . H 4 HOH B 72 292 174 HOH TIP . H 4 HOH B 73 293 176 HOH TIP . H 4 HOH B 74 294 177 HOH TIP . H 4 HOH B 75 295 180 HOH TIP . H 4 HOH B 76 296 181 HOH TIP . H 4 HOH B 77 297 184 HOH TIP . H 4 HOH B 78 298 186 HOH TIP . H 4 HOH B 79 299 188 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 SN2 . . . D 3 -10.222 -13.907 49.741 1 23.43 ? C1 SN2 219 A 1 HETATM 2 C C2 SN2 . . . D 3 -9.878 -14.299 50.979 1 23.43 ? C2 SN2 219 A 1 HETATM 3 C C3 SN2 . . . D 3 -8.665 -15.128 51.242 1 23.43 ? C3 SN2 219 A 1 HETATM 4 C C4 SN2 . . . D 3 -7.851 -15.49 50.208 1 23.43 ? C4 SN2 219 A 1 HETATM 5 C C5 SN2 . . . D 3 -8.269 -15.082 48.832 1 23.43 ? C5 SN2 219 A 1 HETATM 6 C C6 SN2 . . . D 3 -9.381 -14.354 48.591 1 23.43 ? C6 SN2 219 A 1 HETATM 7 C C7 SN2 . . . D 3 -11.212 -11.737 49.985 1 23.43 ? C7 SN2 219 A 1 HETATM 8 C C8 SN2 . . . D 3 -12.604 -13.921 49.784 1 23.43 ? C8 SN2 219 A 1 HETATM 9 C C9 SN2 . . . D 3 -12.237 -11.29 51.072 1 23.43 ? C9 SN2 219 A 1 HETATM 10 C C10 SN2 . . . D 3 -13.015 -14.743 48.524 1 23.43 ? C10 SN2 219 A 1 HETATM 11 C C13 SN2 . . . D 3 -8.589 -15.635 52.64 1 23.43 ? C13 SN2 219 A 1 HETATM 12 O O1 SN2 . . . D 3 -6.482 -16.607 51.162 1 23.43 ? O1 SN2 219 A 1 HETATM 13 O O2 SN2 . . . D 3 -9.604 -13.058 47.148 1 23.43 ? O2 SN2 219 A 1 HETATM 14 O O3 SN2 . . . D 3 -5.857 -15.76 49.566 1 23.43 ? O3 SN2 219 A 1 HETATM 15 O O4 SN2 . . . D 3 -9.242 -15.021 53.488 1 23.43 ? O4 SN2 219 A 1 HETATM 16 O O5 SN2 . . . D 3 -10.014 -14.881 46.646 1 23.43 ? O5 SN2 219 A 1 HETATM 17 N N1 SN2 . . . D 3 -6.757 -15.972 50.309 1 23.43 ? N1 SN2 219 A 1 HETATM 18 N N2 SN2 . . . D 3 -9.689 -14.105 47.474 1 23.43 ? N2 SN2 219 A 1 HETATM 19 N N3 SN2 . . . D 3 -11.336 -13.163 49.555 1 23.43 ? N3 SN2 219 A 1 HETATM 20 N N4 SN2 . . . D 3 -8.484 -17 52.749 1 23.43 ? N4 SN2 219 A 1 HETATM 21 CL CL1 SN2 . . . D 3 -11.938 -16.131 48.26 1 23.43 ? CL1 SN2 219 A 1 HETATM 22 CL CL2 SN2 . . . D 3 -12.165 -11.954 52.718 1 23.43 ? CL2 SN2 219 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 248 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 22 #