data_1OON # _model_server_result.job_id yQJl_EGfBuVNBKDq7Be0Ow _model_server_result.datetime_utc '2024-11-16 04:54:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1oon # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":361}' # _entry.id 1OON # _exptl.entry_id 1OON _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1OON _cell.length_a 57.34 _cell.length_b 57.34 _cell.length_c 264.75 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1OON _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 124 n n N1 C10 FMN doub 125 n n C2 O2 FMN doub 126 n n C2 N3 FMN sing 127 n n N3 C4 FMN sing 128 n n N3 HN3 FMN sing 129 n n C4 O4 FMN doub 130 n n C4 C4A FMN sing 131 n n C4A N5 FMN doub 132 n n C4A C10 FMN sing 133 n n N5 C5A FMN sing 134 n n C5A C6 FMN doub 135 n y C5A C9A FMN sing 136 n y C6 C7 FMN sing 137 n y C6 H6 FMN sing 138 n n C7 C7M FMN sing 139 n n C7 C8 FMN doub 140 n y C7M HM71 FMN sing 141 n n C7M HM72 FMN sing 142 n n C7M HM73 FMN sing 143 n n C8 C8M FMN sing 144 n n C8 C9 FMN sing 145 n y C8M HM81 FMN sing 146 n n C8M HM82 FMN sing 147 n n C8M HM83 FMN sing 148 n n C9 C9A FMN doub 149 n y C9 H9 FMN sing 150 n n C9A N10 FMN sing 151 n n N10 C10 FMN sing 152 n n N10 C1' FMN sing 153 n n C1' C2' FMN sing 154 n n C1' "H1'1" FMN sing 155 n n C1' "H1'2" FMN sing 156 n n C2' O2' FMN sing 157 n n C2' C3' FMN sing 158 n n C2' H2' FMN sing 159 n n O2' HO2' FMN sing 160 n n C3' O3' FMN sing 161 n n C3' C4' FMN sing 162 n n C3' H3' FMN sing 163 n n O3' HO3' FMN sing 164 n n C4' O4' FMN sing 165 n n C4' C5' FMN sing 166 n n C4' H4' FMN sing 167 n n O4' HO4' FMN sing 168 n n C5' O5' FMN sing 169 n n C5' "H5'1" FMN sing 170 n n C5' "H5'2" FMN sing 171 n n O5' P FMN sing 172 n n P O1P FMN doub 173 n n P O2P FMN sing 174 n n P O3P FMN sing 175 n n O2P HOP2 FMN sing 176 n n O3P HOP3 FMN sing 177 n n # _atom_sites.entry_id 1OON _atom_sites.fract_transf_matrix[1][1] 0.01744 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01744 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003777 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FMN A 1 360 218 FMN FMN . D 3 BEL A 1 362 219 BEL BEN . E 2 FMN B 1 361 218 FMN FMN . F 4 HOH A 1 363 1 HOH TIP . F 4 HOH A 2 364 2 HOH TIP . F 4 HOH A 3 365 7 HOH TIP . F 4 HOH A 4 366 8 HOH TIP . F 4 HOH A 5 367 11 HOH TIP . F 4 HOH A 6 368 13 HOH TIP . F 4 HOH A 7 369 14 HOH TIP . F 4 HOH A 8 370 15 HOH TIP . F 4 HOH A 9 371 16 HOH TIP . F 4 HOH A 10 372 17 HOH TIP . F 4 HOH A 11 373 19 HOH TIP . F 4 HOH A 12 374 21 HOH TIP . F 4 HOH A 13 375 23 HOH TIP . F 4 HOH A 14 376 24 HOH TIP . F 4 HOH A 15 377 26 HOH TIP . F 4 HOH A 16 378 28 HOH TIP . F 4 HOH A 17 379 30 HOH TIP . F 4 HOH A 18 380 31 HOH TIP . F 4 HOH A 19 381 33 HOH TIP . F 4 HOH A 20 382 35 HOH TIP . F 4 HOH A 21 383 38 HOH TIP . F 4 HOH A 22 384 39 HOH TIP . F 4 HOH A 23 385 43 HOH TIP . F 4 HOH A 24 386 44 HOH TIP . F 4 HOH A 25 387 46 HOH TIP . F 4 HOH A 26 388 47 HOH TIP . F 4 HOH A 27 389 48 HOH TIP . F 4 HOH A 28 390 49 HOH TIP . F 4 HOH A 29 391 50 HOH TIP . F 4 HOH A 30 392 51 HOH TIP . F 4 HOH A 31 393 52 HOH TIP . F 4 HOH A 32 394 53 HOH TIP . F 4 HOH A 33 395 58 HOH TIP . F 4 HOH A 34 396 60 HOH TIP . F 4 HOH A 35 397 61 HOH TIP . F 4 HOH A 36 398 62 HOH TIP . F 4 HOH A 37 399 64 HOH TIP . F 4 HOH A 38 400 65 HOH TIP . F 4 HOH A 39 401 67 HOH TIP . F 4 HOH A 40 402 71 HOH TIP . F 4 HOH A 41 403 74 HOH TIP . F 4 HOH A 42 404 79 HOH TIP . F 4 HOH A 43 405 80 HOH TIP . F 4 HOH A 44 406 85 HOH TIP . F 4 HOH A 45 407 86 HOH TIP . F 4 HOH A 46 408 87 HOH TIP . F 4 HOH A 47 409 88 HOH TIP . F 4 HOH A 48 410 94 HOH TIP . F 4 HOH A 49 411 97 HOH TIP . F 4 HOH A 50 412 102 HOH TIP . F 4 HOH A 51 413 104 HOH TIP . F 4 HOH A 52 414 108 HOH TIP . F 4 HOH A 53 415 113 HOH TIP . F 4 HOH A 54 416 114 HOH TIP . F 4 HOH A 55 417 123 HOH TIP . F 4 HOH A 56 418 124 HOH TIP . F 4 HOH A 57 419 131 HOH TIP . F 4 HOH A 58 420 132 HOH TIP . F 4 HOH A 59 421 133 HOH TIP . F 4 HOH A 60 422 136 HOH TIP . F 4 HOH A 61 423 138 HOH TIP . F 4 HOH A 62 424 139 HOH TIP . F 4 HOH A 63 425 147 HOH TIP . F 4 HOH A 64 426 148 HOH TIP . F 4 HOH A 65 427 153 HOH TIP . F 4 HOH A 66 428 154 HOH TIP . F 4 HOH A 67 429 155 HOH TIP . F 4 HOH A 68 430 156 HOH TIP . F 4 HOH A 69 431 158 HOH TIP . F 4 HOH A 70 432 159 HOH TIP . F 4 HOH A 71 433 165 HOH TIP . F 4 HOH A 72 434 177 HOH TIP . F 4 HOH A 73 435 178 HOH TIP . F 4 HOH A 74 436 180 HOH TIP . F 4 HOH A 75 437 192 HOH TIP . F 4 HOH A 76 438 207 HOH TIP . F 4 HOH A 77 439 209 HOH TIP . F 4 HOH A 78 440 210 HOH TIP . F 4 HOH A 79 441 211 HOH TIP . F 4 HOH A 80 442 213 HOH TIP . F 4 HOH A 81 443 231 HOH TIP . F 4 HOH A 82 444 236 HOH TIP . F 4 HOH A 83 445 254 HOH TIP . F 4 HOH A 84 446 256 HOH TIP . F 4 HOH A 85 447 257 HOH TIP . F 4 HOH A 86 448 258 HOH TIP . F 4 HOH A 87 449 259 HOH TIP . F 4 HOH A 88 450 260 HOH TIP . F 4 HOH A 89 451 264 HOH TIP . F 4 HOH A 90 452 267 HOH TIP . F 4 HOH A 91 453 268 HOH TIP . F 4 HOH A 92 454 271 HOH TIP . F 4 HOH A 93 455 272 HOH TIP . F 4 HOH A 94 456 274 HOH TIP . F 4 HOH A 95 457 275 HOH TIP . F 4 HOH A 96 458 276 HOH TIP . F 4 HOH A 97 459 277 HOH TIP . F 4 HOH A 98 460 280 HOH TIP . F 4 HOH A 99 461 281 HOH TIP . F 4 HOH A 100 462 284 HOH TIP . F 4 HOH A 101 463 285 HOH TIP . F 4 HOH A 102 464 292 HOH TIP . F 4 HOH A 103 465 294 HOH TIP . F 4 HOH A 104 466 295 HOH TIP . F 4 HOH A 105 467 296 HOH TIP . F 4 HOH A 106 468 298 HOH TIP . F 4 HOH A 107 469 304 HOH TIP . F 4 HOH A 108 470 306 HOH TIP . F 4 HOH A 109 471 308 HOH TIP . F 4 HOH A 110 472 311 HOH TIP . F 4 HOH A 111 473 314 HOH TIP . F 4 HOH A 112 474 316 HOH TIP . F 4 HOH A 113 475 317 HOH TIP . F 4 HOH A 114 476 319 HOH TIP . F 4 HOH A 115 477 320 HOH TIP . F 4 HOH A 116 478 321 HOH TIP . F 4 HOH A 117 479 324 HOH TIP . F 4 HOH A 118 480 326 HOH TIP . F 4 HOH A 119 481 328 HOH TIP . F 4 HOH A 120 482 329 HOH TIP . F 4 HOH A 121 483 331 HOH TIP . F 4 HOH A 122 484 332 HOH TIP . F 4 HOH A 123 485 335 HOH TIP . F 4 HOH A 124 486 337 HOH TIP . F 4 HOH A 125 487 339 HOH TIP . F 4 HOH A 126 488 340 HOH TIP . F 4 HOH A 127 489 343 HOH TIP . F 4 HOH A 128 490 344 HOH TIP . F 4 HOH A 129 491 345 HOH TIP . F 4 HOH A 130 492 347 HOH TIP . F 4 HOH A 131 493 348 HOH TIP . F 4 HOH A 132 494 349 HOH TIP . F 4 HOH A 133 495 351 HOH TIP . F 4 HOH A 134 496 352 HOH TIP . F 4 HOH A 135 497 353 HOH TIP . F 4 HOH A 136 498 356 HOH TIP . G 4 HOH B 1 362 3 HOH TIP . G 4 HOH B 2 363 4 HOH TIP . G 4 HOH B 3 364 5 HOH TIP . G 4 HOH B 4 365 6 HOH TIP . G 4 HOH B 5 366 9 HOH TIP . G 4 HOH B 6 367 10 HOH TIP . G 4 HOH B 7 368 12 HOH TIP . G 4 HOH B 8 369 18 HOH TIP . G 4 HOH B 9 370 20 HOH TIP . G 4 HOH B 10 371 22 HOH TIP . G 4 HOH B 11 372 25 HOH TIP . G 4 HOH B 12 373 27 HOH TIP . G 4 HOH B 13 374 29 HOH TIP . G 4 HOH B 14 375 32 HOH TIP . G 4 HOH B 15 376 34 HOH TIP . G 4 HOH B 16 377 36 HOH TIP . G 4 HOH B 17 378 37 HOH TIP . G 4 HOH B 18 379 41 HOH TIP . G 4 HOH B 19 380 42 HOH TIP . G 4 HOH B 20 381 45 HOH TIP . G 4 HOH B 21 382 54 HOH TIP . G 4 HOH B 22 383 56 HOH TIP . G 4 HOH B 23 384 57 HOH TIP . G 4 HOH B 24 385 59 HOH TIP . G 4 HOH B 25 386 66 HOH TIP . G 4 HOH B 26 387 68 HOH TIP . G 4 HOH B 27 388 70 HOH TIP . G 4 HOH B 28 389 72 HOH TIP . G 4 HOH B 29 390 75 HOH TIP . G 4 HOH B 30 391 91 HOH TIP . G 4 HOH B 31 392 96 HOH TIP . G 4 HOH B 32 393 98 HOH TIP . G 4 HOH B 33 394 109 HOH TIP . G 4 HOH B 34 395 122 HOH TIP . G 4 HOH B 35 396 126 HOH TIP . G 4 HOH B 36 397 141 HOH TIP . G 4 HOH B 37 398 149 HOH TIP . G 4 HOH B 38 399 150 HOH TIP . G 4 HOH B 39 400 151 HOH TIP . G 4 HOH B 40 401 160 HOH TIP . G 4 HOH B 41 402 166 HOH TIP . G 4 HOH B 42 403 167 HOH TIP . G 4 HOH B 43 404 212 HOH TIP . G 4 HOH B 44 405 214 HOH TIP . G 4 HOH B 45 406 216 HOH TIP . G 4 HOH B 46 407 218 HOH TIP . G 4 HOH B 47 408 220 HOH TIP . G 4 HOH B 48 409 224 HOH TIP . G 4 HOH B 49 410 234 HOH TIP . G 4 HOH B 50 411 235 HOH TIP . G 4 HOH B 51 412 240 HOH TIP . G 4 HOH B 52 413 248 HOH TIP . G 4 HOH B 53 414 255 HOH TIP . G 4 HOH B 54 415 261 HOH TIP . G 4 HOH B 55 416 262 HOH TIP . G 4 HOH B 56 417 263 HOH TIP . G 4 HOH B 57 418 269 HOH TIP . G 4 HOH B 58 419 270 HOH TIP . G 4 HOH B 59 420 273 HOH TIP . G 4 HOH B 60 421 278 HOH TIP . G 4 HOH B 61 422 279 HOH TIP . G 4 HOH B 62 423 282 HOH TIP . G 4 HOH B 63 424 283 HOH TIP . G 4 HOH B 64 425 286 HOH TIP . G 4 HOH B 65 426 287 HOH TIP . G 4 HOH B 66 427 288 HOH TIP . G 4 HOH B 67 428 289 HOH TIP . G 4 HOH B 68 429 290 HOH TIP . G 4 HOH B 69 430 291 HOH TIP . G 4 HOH B 70 431 293 HOH TIP . G 4 HOH B 71 432 297 HOH TIP . G 4 HOH B 72 433 299 HOH TIP . G 4 HOH B 73 434 300 HOH TIP . G 4 HOH B 74 435 301 HOH TIP . G 4 HOH B 75 436 302 HOH TIP . G 4 HOH B 76 437 303 HOH TIP . G 4 HOH B 77 438 305 HOH TIP . G 4 HOH B 78 439 307 HOH TIP . G 4 HOH B 79 440 309 HOH TIP . G 4 HOH B 80 441 312 HOH TIP . G 4 HOH B 81 442 313 HOH TIP . G 4 HOH B 82 443 315 HOH TIP . G 4 HOH B 83 444 318 HOH TIP . G 4 HOH B 84 445 322 HOH TIP . G 4 HOH B 85 446 323 HOH TIP . G 4 HOH B 86 447 325 HOH TIP . G 4 HOH B 87 448 327 HOH TIP . G 4 HOH B 88 449 330 HOH TIP . G 4 HOH B 89 450 334 HOH TIP . G 4 HOH B 90 451 336 HOH TIP . G 4 HOH B 91 452 338 HOH TIP . G 4 HOH B 92 453 341 HOH TIP . G 4 HOH B 93 454 346 HOH TIP . G 4 HOH B 94 455 354 HOH TIP . G 4 HOH B 95 456 355 HOH TIP . G 4 HOH B 96 457 358 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . E 2 -6.895 -18.068 46.957 1 40.87 ? N1 FMN 361 B 1 HETATM 2 C C2 FMN . . . E 2 -8.22 -18.142 47.275 1 41.6 ? C2 FMN 361 B 1 HETATM 3 O O2 FMN . . . E 2 -9.109 -17.738 46.559 1 42.09 ? O2 FMN 361 B 1 HETATM 4 N N3 FMN . . . E 2 -8.602 -18.731 48.53 1 40.94 ? N3 FMN 361 B 1 HETATM 5 C C4 FMN . . . E 2 -7.752 -19.252 49.445 1 40.43 ? C4 FMN 361 B 1 HETATM 6 O O4 FMN . . . E 2 -8.178 -19.741 50.498 1 40.65 ? O4 FMN 361 B 1 HETATM 7 C C4A FMN . . . E 2 -6.326 -19.228 49.077 1 40.34 ? C4A FMN 361 B 1 HETATM 8 N N5 FMN . . . E 2 -5.409 -19.812 49.852 1 41.64 ? N5 FMN 361 B 1 HETATM 9 C C5A FMN . . . E 2 -4.113 -19.928 49.384 1 40.53 ? C5A FMN 361 B 1 HETATM 10 C C6 FMN . . . E 2 -3.113 -20.697 50.131 1 37.92 ? C6 FMN 361 B 1 HETATM 11 C C7 FMN . . . E 2 -1.849 -20.937 49.684 1 37.31 ? C7 FMN 361 B 1 HETATM 12 C C7M FMN . . . E 2 -0.857 -21.836 50.42 1 35.41 ? C7M FMN 361 B 1 HETATM 13 C C8 FMN . . . E 2 -1.419 -20.336 48.413 1 37.47 ? C8 FMN 361 B 1 HETATM 14 C C8M FMN . . . E 2 -0.083 -20.638 47.812 1 39.13 ? C8M FMN 361 B 1 HETATM 15 C C9 FMN . . . E 2 -2.314 -19.524 47.742 1 39.34 ? C9 FMN 361 B 1 HETATM 16 C C9A FMN . . . E 2 -3.657 -19.334 48.142 1 39.8 ? C9A FMN 361 B 1 HETATM 17 N N10 FMN . . . E 2 -4.647 -18.619 47.399 1 40.27 ? N10 FMN 361 B 1 HETATM 18 C C10 FMN . . . E 2 -5.978 -18.593 47.771 1 40.43 ? C10 FMN 361 B 1 HETATM 19 C C1' FMN . . . E 2 -4.285 -17.953 46.132 1 39.62 ? C1' FMN 361 B 1 HETATM 20 C C2' FMN . . . E 2 -3.451 -16.701 46.37 1 39.39 ? C2' FMN 361 B 1 HETATM 21 O O2' FMN . . . E 2 -4.237 -15.551 46.667 1 40.34 ? O2' FMN 361 B 1 HETATM 22 C C3' FMN . . . E 2 -2.606 -16.424 45.115 1 38.97 ? C3' FMN 361 B 1 HETATM 23 O O3' FMN . . . E 2 -1.688 -17.54 44.918 1 38.5 ? O3' FMN 361 B 1 HETATM 24 C C4' FMN . . . E 2 -1.808 -15.147 45.164 1 39.08 ? C4' FMN 361 B 1 HETATM 25 O O4' FMN . . . E 2 -2.694 -13.999 45.235 1 39.53 ? O4' FMN 361 B 1 HETATM 26 C C5' FMN . . . E 2 -0.915 -14.951 43.979 1 38.38 ? C5' FMN 361 B 1 HETATM 27 O O5' FMN . . . E 2 -1.726 -14.92 42.798 1 38.3 ? O5' FMN 361 B 1 HETATM 28 P P FMN . . . E 2 -1.533 -15.948 41.632 1 37.25 ? P FMN 361 B 1 HETATM 29 O O1P FMN . . . E 2 -2.462 -15.523 40.521 1 39.39 ? O1P FMN 361 B 1 HETATM 30 O O2P FMN . . . E 2 -1.754 -17.333 42.156 1 37.38 ? O2P FMN 361 B 1 HETATM 31 O O3P FMN . . . E 2 -0.054 -15.715 41.195 1 38.28 ? O3P FMN 361 B 1 # _model_server_stats.io_time_ms 57 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 246 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 31 #