data_1OPK # _model_server_result.job_id 96f8OZKHTfIKXXNorV_pBg _model_server_result.datetime_utc '2024-11-23 03:35:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1opk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1}' # _entry.id 1OPK # _exptl.entry_id 1OPK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 228.371 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MYRISTIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1OPK _cell.length_a 118.328 _cell.length_b 123.943 _cell.length_c 74.798 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1OPK _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C14 H28 O2' _chem_comp.formula_weight 228.371 _chem_comp.id MYR _chem_comp.mon_nstd_flag . _chem_comp.name 'MYRISTIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 MYR doub 250 n n C1 O2 MYR sing 251 n n C1 C2 MYR sing 252 n n O2 HO2 MYR sing 253 n n C2 C3 MYR sing 254 n n C2 H21 MYR sing 255 n n C2 H22 MYR sing 256 n n C3 C4 MYR sing 257 n n C3 H31 MYR sing 258 n n C3 H32 MYR sing 259 n n C4 C5 MYR sing 260 n n C4 H41 MYR sing 261 n n C4 H42 MYR sing 262 n n C5 C6 MYR sing 263 n n C5 H51 MYR sing 264 n n C5 H52 MYR sing 265 n n C6 C7 MYR sing 266 n n C6 H61 MYR sing 267 n n C6 H62 MYR sing 268 n n C7 C8 MYR sing 269 n n C7 H71 MYR sing 270 n n C7 H72 MYR sing 271 n n C8 C9 MYR sing 272 n n C8 H81 MYR sing 273 n n C8 H82 MYR sing 274 n n C9 C10 MYR sing 275 n n C9 H91 MYR sing 276 n n C9 H92 MYR sing 277 n n C10 C11 MYR sing 278 n n C10 H101 MYR sing 279 n n C10 H102 MYR sing 280 n n C11 C12 MYR sing 281 n n C11 H111 MYR sing 282 n n C11 H112 MYR sing 283 n n C12 C13 MYR sing 284 n n C12 H121 MYR sing 285 n n C12 H122 MYR sing 286 n n C13 C14 MYR sing 287 n n C13 H131 MYR sing 288 n n C13 H132 MYR sing 289 n n C14 H141 MYR sing 290 n n C14 H142 MYR sing 291 n n C14 H143 MYR sing 292 n n # _atom_sites.entry_id 1OPK _atom_sites.fract_transf_matrix[1][1] 0.008451 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008068 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013369 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MYR A 1 1 1 MYR MYR . C 3 P16 A 1 2 2 P16 P16 . D 4 GOL A 1 3 3 GOL GOL . E 5 HOH A 1 535 4 HOH HOH . E 5 HOH A 2 536 5 HOH HOH . E 5 HOH A 3 537 6 HOH HOH . E 5 HOH A 4 538 7 HOH HOH . E 5 HOH A 5 539 8 HOH HOH . E 5 HOH A 6 540 9 HOH HOH . E 5 HOH A 7 541 10 HOH HOH . E 5 HOH A 8 542 11 HOH HOH . E 5 HOH A 9 543 12 HOH HOH . E 5 HOH A 10 544 13 HOH HOH . E 5 HOH A 11 545 14 HOH HOH . E 5 HOH A 12 546 15 HOH HOH . E 5 HOH A 13 547 16 HOH HOH . E 5 HOH A 14 548 17 HOH HOH . E 5 HOH A 15 549 18 HOH HOH . E 5 HOH A 16 550 19 HOH HOH . E 5 HOH A 17 551 20 HOH HOH . E 5 HOH A 18 552 21 HOH HOH . E 5 HOH A 19 553 22 HOH HOH . E 5 HOH A 20 554 23 HOH HOH . E 5 HOH A 21 555 24 HOH HOH . E 5 HOH A 22 556 25 HOH HOH . E 5 HOH A 23 557 26 HOH HOH . E 5 HOH A 24 558 27 HOH HOH . E 5 HOH A 25 559 28 HOH HOH . E 5 HOH A 26 560 29 HOH HOH . E 5 HOH A 27 561 30 HOH HOH . E 5 HOH A 28 562 31 HOH HOH . E 5 HOH A 29 563 32 HOH HOH . E 5 HOH A 30 564 33 HOH HOH . E 5 HOH A 31 565 34 HOH HOH . E 5 HOH A 32 566 35 HOH HOH . E 5 HOH A 33 567 36 HOH HOH . E 5 HOH A 34 568 37 HOH HOH . E 5 HOH A 35 569 38 HOH HOH . E 5 HOH A 36 570 39 HOH HOH . E 5 HOH A 37 571 40 HOH HOH . E 5 HOH A 38 572 41 HOH HOH . E 5 HOH A 39 573 42 HOH HOH . E 5 HOH A 40 574 43 HOH HOH . E 5 HOH A 41 575 44 HOH HOH . E 5 HOH A 42 576 45 HOH HOH . E 5 HOH A 43 577 46 HOH HOH . E 5 HOH A 44 578 47 HOH HOH . E 5 HOH A 45 579 48 HOH HOH . E 5 HOH A 46 580 49 HOH HOH . E 5 HOH A 47 581 50 HOH HOH . E 5 HOH A 48 582 51 HOH HOH . E 5 HOH A 49 583 52 HOH HOH . E 5 HOH A 50 584 53 HOH HOH . E 5 HOH A 51 585 54 HOH HOH . E 5 HOH A 52 586 55 HOH HOH . E 5 HOH A 53 587 56 HOH HOH . E 5 HOH A 54 588 57 HOH HOH . E 5 HOH A 55 589 58 HOH HOH . E 5 HOH A 56 590 59 HOH HOH . E 5 HOH A 57 591 60 HOH HOH . E 5 HOH A 58 592 61 HOH HOH . E 5 HOH A 59 593 62 HOH HOH . E 5 HOH A 60 594 63 HOH HOH . E 5 HOH A 61 595 64 HOH HOH . E 5 HOH A 62 596 65 HOH HOH . E 5 HOH A 63 597 66 HOH HOH . E 5 HOH A 64 598 67 HOH HOH . E 5 HOH A 65 599 68 HOH HOH . E 5 HOH A 66 600 69 HOH HOH . E 5 HOH A 67 601 70 HOH HOH . E 5 HOH A 68 602 71 HOH HOH . E 5 HOH A 69 603 72 HOH HOH . E 5 HOH A 70 604 73 HOH HOH . E 5 HOH A 71 605 74 HOH HOH . E 5 HOH A 72 606 75 HOH HOH . E 5 HOH A 73 607 76 HOH HOH . E 5 HOH A 74 608 77 HOH HOH . E 5 HOH A 75 609 78 HOH HOH . E 5 HOH A 76 610 79 HOH HOH . E 5 HOH A 77 611 80 HOH HOH . E 5 HOH A 78 612 81 HOH HOH . E 5 HOH A 79 613 82 HOH HOH . E 5 HOH A 80 614 83 HOH HOH . E 5 HOH A 81 615 84 HOH HOH . E 5 HOH A 82 616 85 HOH HOH . E 5 HOH A 83 617 86 HOH HOH . E 5 HOH A 84 618 87 HOH HOH . E 5 HOH A 85 619 88 HOH HOH . E 5 HOH A 86 620 89 HOH HOH . E 5 HOH A 87 621 90 HOH HOH . E 5 HOH A 88 622 91 HOH HOH . E 5 HOH A 89 623 92 HOH HOH . E 5 HOH A 90 624 93 HOH HOH . E 5 HOH A 91 625 94 HOH HOH . E 5 HOH A 92 626 95 HOH HOH . E 5 HOH A 93 627 96 HOH HOH . E 5 HOH A 94 628 97 HOH HOH . E 5 HOH A 95 629 98 HOH HOH . E 5 HOH A 96 630 99 HOH HOH . E 5 HOH A 97 631 100 HOH HOH . E 5 HOH A 98 632 101 HOH HOH . E 5 HOH A 99 633 102 HOH HOH . E 5 HOH A 100 634 103 HOH HOH . E 5 HOH A 101 635 104 HOH HOH . E 5 HOH A 102 636 105 HOH HOH . E 5 HOH A 103 637 106 HOH HOH . E 5 HOH A 104 638 107 HOH HOH . E 5 HOH A 105 639 108 HOH HOH . E 5 HOH A 106 640 109 HOH HOH . E 5 HOH A 107 641 110 HOH HOH . E 5 HOH A 108 642 111 HOH HOH . E 5 HOH A 109 643 112 HOH HOH . E 5 HOH A 110 644 113 HOH HOH . E 5 HOH A 111 645 114 HOH HOH . E 5 HOH A 112 646 115 HOH HOH . E 5 HOH A 113 647 116 HOH HOH . E 5 HOH A 114 648 117 HOH HOH . E 5 HOH A 115 649 118 HOH HOH . E 5 HOH A 116 650 119 HOH HOH . E 5 HOH A 117 651 120 HOH HOH . E 5 HOH A 118 652 121 HOH HOH . E 5 HOH A 119 653 122 HOH HOH . E 5 HOH A 120 654 123 HOH HOH . E 5 HOH A 121 655 124 HOH HOH . E 5 HOH A 122 656 125 HOH HOH . E 5 HOH A 123 657 126 HOH HOH . E 5 HOH A 124 658 127 HOH HOH . E 5 HOH A 125 659 128 HOH HOH . E 5 HOH A 126 660 129 HOH HOH . E 5 HOH A 127 661 130 HOH HOH . E 5 HOH A 128 662 131 HOH HOH . E 5 HOH A 129 663 132 HOH HOH . E 5 HOH A 130 664 133 HOH HOH . E 5 HOH A 131 665 134 HOH HOH . E 5 HOH A 132 666 135 HOH HOH . E 5 HOH A 133 667 136 HOH HOH . E 5 HOH A 134 668 137 HOH HOH . E 5 HOH A 135 669 138 HOH HOH . E 5 HOH A 136 670 139 HOH HOH . E 5 HOH A 137 671 140 HOH HOH . E 5 HOH A 138 672 141 HOH HOH . E 5 HOH A 139 673 142 HOH HOH . E 5 HOH A 140 674 143 HOH HOH . E 5 HOH A 141 675 144 HOH HOH . E 5 HOH A 142 676 145 HOH HOH . E 5 HOH A 143 677 146 HOH HOH . E 5 HOH A 144 678 147 HOH HOH . E 5 HOH A 145 679 148 HOH HOH . E 5 HOH A 146 680 149 HOH HOH . E 5 HOH A 147 681 150 HOH HOH . E 5 HOH A 148 682 151 HOH HOH . E 5 HOH A 149 683 152 HOH HOH . E 5 HOH A 150 684 153 HOH HOH . E 5 HOH A 151 685 154 HOH HOH . E 5 HOH A 152 686 155 HOH HOH . E 5 HOH A 153 687 156 HOH HOH . E 5 HOH A 154 688 157 HOH HOH . E 5 HOH A 155 689 158 HOH HOH . E 5 HOH A 156 690 159 HOH HOH . E 5 HOH A 157 691 160 HOH HOH . E 5 HOH A 158 692 161 HOH HOH . E 5 HOH A 159 693 162 HOH HOH . E 5 HOH A 160 694 163 HOH HOH . E 5 HOH A 161 695 164 HOH HOH . E 5 HOH A 162 696 165 HOH HOH . E 5 HOH A 163 697 166 HOH HOH . E 5 HOH A 164 698 167 HOH HOH . E 5 HOH A 165 699 168 HOH HOH . E 5 HOH A 166 700 169 HOH HOH . E 5 HOH A 167 701 170 HOH HOH . E 5 HOH A 168 702 171 HOH HOH . E 5 HOH A 169 703 172 HOH HOH . E 5 HOH A 170 704 173 HOH HOH . E 5 HOH A 171 705 174 HOH HOH . E 5 HOH A 172 706 175 HOH HOH . E 5 HOH A 173 707 176 HOH HOH . E 5 HOH A 174 708 177 HOH HOH . E 5 HOH A 175 709 178 HOH HOH . E 5 HOH A 176 710 179 HOH HOH . E 5 HOH A 177 711 180 HOH HOH . E 5 HOH A 178 712 181 HOH HOH . E 5 HOH A 179 713 182 HOH HOH . E 5 HOH A 180 714 183 HOH HOH . E 5 HOH A 181 715 184 HOH HOH . E 5 HOH A 182 716 185 HOH HOH . E 5 HOH A 183 717 186 HOH HOH . E 5 HOH A 184 718 187 HOH HOH . E 5 HOH A 185 719 188 HOH HOH . E 5 HOH A 186 720 189 HOH HOH . E 5 HOH A 187 721 190 HOH HOH . E 5 HOH A 188 722 191 HOH HOH . E 5 HOH A 189 723 192 HOH HOH . E 5 HOH A 190 724 193 HOH HOH . E 5 HOH A 191 725 194 HOH HOH . E 5 HOH A 192 726 195 HOH HOH . E 5 HOH A 193 727 196 HOH HOH . E 5 HOH A 194 728 197 HOH HOH . E 5 HOH A 195 729 198 HOH HOH . E 5 HOH A 196 730 199 HOH HOH . E 5 HOH A 197 731 200 HOH HOH . E 5 HOH A 198 732 201 HOH HOH . E 5 HOH A 199 733 202 HOH HOH . E 5 HOH A 200 734 203 HOH HOH . E 5 HOH A 201 735 204 HOH HOH . E 5 HOH A 202 736 205 HOH HOH . E 5 HOH A 203 737 206 HOH HOH . E 5 HOH A 204 738 207 HOH HOH . E 5 HOH A 205 739 208 HOH HOH . E 5 HOH A 206 740 209 HOH HOH . E 5 HOH A 207 741 210 HOH HOH . E 5 HOH A 208 742 211 HOH HOH . E 5 HOH A 209 743 212 HOH HOH . E 5 HOH A 210 744 213 HOH HOH . E 5 HOH A 211 745 214 HOH HOH . E 5 HOH A 212 746 215 HOH HOH . E 5 HOH A 213 747 216 HOH HOH . E 5 HOH A 214 748 217 HOH HOH . E 5 HOH A 215 749 218 HOH HOH . E 5 HOH A 216 750 219 HOH HOH . E 5 HOH A 217 751 220 HOH HOH . E 5 HOH A 218 752 221 HOH HOH . E 5 HOH A 219 753 222 HOH HOH . E 5 HOH A 220 754 223 HOH HOH . E 5 HOH A 221 755 224 HOH HOH . E 5 HOH A 222 756 225 HOH HOH . E 5 HOH A 223 757 226 HOH HOH . E 5 HOH A 224 758 227 HOH HOH . E 5 HOH A 225 759 228 HOH HOH . E 5 HOH A 226 760 229 HOH HOH . E 5 HOH A 227 761 230 HOH HOH . E 5 HOH A 228 762 231 HOH HOH . E 5 HOH A 229 763 232 HOH HOH . E 5 HOH A 230 764 233 HOH HOH . E 5 HOH A 231 765 234 HOH HOH . E 5 HOH A 232 766 235 HOH HOH . E 5 HOH A 233 767 236 HOH HOH . E 5 HOH A 234 768 237 HOH HOH . E 5 HOH A 235 769 238 HOH HOH . E 5 HOH A 236 770 239 HOH HOH . E 5 HOH A 237 771 240 HOH HOH . E 5 HOH A 238 772 241 HOH HOH . E 5 HOH A 239 773 242 HOH HOH . E 5 HOH A 240 774 243 HOH HOH . E 5 HOH A 241 775 244 HOH HOH . E 5 HOH A 242 776 245 HOH HOH . E 5 HOH A 243 777 246 HOH HOH . E 5 HOH A 244 778 247 HOH HOH . E 5 HOH A 245 779 248 HOH HOH . E 5 HOH A 246 780 249 HOH HOH . E 5 HOH A 247 781 250 HOH HOH . E 5 HOH A 248 782 251 HOH HOH . E 5 HOH A 249 783 252 HOH HOH . E 5 HOH A 250 784 253 HOH HOH . E 5 HOH A 251 785 254 HOH HOH . E 5 HOH A 252 786 255 HOH HOH . E 5 HOH A 253 787 256 HOH HOH . E 5 HOH A 254 788 257 HOH HOH . E 5 HOH A 255 789 258 HOH HOH . E 5 HOH A 256 790 259 HOH HOH . E 5 HOH A 257 791 260 HOH HOH . E 5 HOH A 258 792 261 HOH HOH . E 5 HOH A 259 793 262 HOH HOH . E 5 HOH A 260 794 263 HOH HOH . E 5 HOH A 261 795 264 HOH HOH . E 5 HOH A 262 796 265 HOH HOH . E 5 HOH A 263 797 266 HOH HOH . E 5 HOH A 264 798 267 HOH HOH . E 5 HOH A 265 799 268 HOH HOH . E 5 HOH A 266 800 269 HOH HOH . E 5 HOH A 267 801 270 HOH HOH . E 5 HOH A 268 802 271 HOH HOH . E 5 HOH A 269 803 272 HOH HOH . E 5 HOH A 270 804 273 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MYR . . . B 2 49.437 16.472 -13.265 1 65.4 ? C1 MYR 1 A 1 HETATM 2 O O1 MYR . . . B 2 49.637 15.954 -14.44 1 67.02 ? O1 MYR 1 A 1 HETATM 3 O O2 MYR . . . B 2 50.162 16.184 -12.334 1 66.7 ? O2 MYR 1 A 1 HETATM 4 C C2 MYR . . . B 2 48.254 17.433 -13.176 1 63.37 ? C2 MYR 1 A 1 HETATM 5 C C3 MYR . . . B 2 47.273 17.07 -12.059 1 60.13 ? C3 MYR 1 A 1 HETATM 6 C C4 MYR . . . B 2 46.052 17.989 -12.03 1 56.62 ? C4 MYR 1 A 1 HETATM 7 C C5 MYR . . . B 2 46.086 19.003 -10.88 1 52.9 ? C5 MYR 1 A 1 HETATM 8 C C6 MYR . . . B 2 44.795 18.997 -10.049 1 49.13 ? C6 MYR 1 A 1 HETATM 9 C C7 MYR . . . B 2 44.538 20.332 -9.374 1 46.07 ? C7 MYR 1 A 1 HETATM 10 C C8 MYR . . . B 2 43.271 20.34 -8.552 1 43.03 ? C8 MYR 1 A 1 HETATM 11 C C9 MYR . . . B 2 42.969 21.702 -7.981 1 41.13 ? C9 MYR 1 A 1 HETATM 12 C C10 MYR . . . B 2 41.707 21.738 -7.16 1 39.85 ? C10 MYR 1 A 1 HETATM 13 C C11 MYR . . . B 2 41.481 23.054 -6.447 1 38.44 ? C11 MYR 1 A 1 HETATM 14 C C12 MYR . . . B 2 40.204 23.043 -5.64 1 38.54 ? C12 MYR 1 A 1 HETATM 15 C C13 MYR . . . B 2 40.424 23.235 -4.152 1 39.63 ? C13 MYR 1 A 1 HETATM 16 C C14 MYR . . . B 2 39.225 23.89 -3.491 1 36.95 ? C14 MYR 1 A 1 # _model_server_stats.io_time_ms 47 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 259 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 16 #