data_1OPK
#
_model_server_result.job_id            KqntK7nrCUwUlnDf306zfQ 
_model_server_result.datetime_utc      '2024-11-23 04:00:20' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1opk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":3}' 
#
_entry.id    1OPK 
#
_exptl.entry_id    1OPK 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1OPK 
_cell.length_a            118.328 
_cell.length_b            123.943 
_cell.length_c            74.798 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1OPK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     1OPK 
_atom_sites.fract_transf_matrix[1][1]    0.008451 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008068 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013369 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MYR A 1 1 1 MYR MYR . 
C 3 P16 A 1 2 2 P16 P16 . 
D 4 GOL A 1 3 3 GOL GOL . 
E 5 HOH A 1 535 4 HOH HOH . 
E 5 HOH A 2 536 5 HOH HOH . 
E 5 HOH A 3 537 6 HOH HOH . 
E 5 HOH A 4 538 7 HOH HOH . 
E 5 HOH A 5 539 8 HOH HOH . 
E 5 HOH A 6 540 9 HOH HOH . 
E 5 HOH A 7 541 10 HOH HOH . 
E 5 HOH A 8 542 11 HOH HOH . 
E 5 HOH A 9 543 12 HOH HOH . 
E 5 HOH A 10 544 13 HOH HOH . 
E 5 HOH A 11 545 14 HOH HOH . 
E 5 HOH A 12 546 15 HOH HOH . 
E 5 HOH A 13 547 16 HOH HOH . 
E 5 HOH A 14 548 17 HOH HOH . 
E 5 HOH A 15 549 18 HOH HOH . 
E 5 HOH A 16 550 19 HOH HOH . 
E 5 HOH A 17 551 20 HOH HOH . 
E 5 HOH A 18 552 21 HOH HOH . 
E 5 HOH A 19 553 22 HOH HOH . 
E 5 HOH A 20 554 23 HOH HOH . 
E 5 HOH A 21 555 24 HOH HOH . 
E 5 HOH A 22 556 25 HOH HOH . 
E 5 HOH A 23 557 26 HOH HOH . 
E 5 HOH A 24 558 27 HOH HOH . 
E 5 HOH A 25 559 28 HOH HOH . 
E 5 HOH A 26 560 29 HOH HOH . 
E 5 HOH A 27 561 30 HOH HOH . 
E 5 HOH A 28 562 31 HOH HOH . 
E 5 HOH A 29 563 32 HOH HOH . 
E 5 HOH A 30 564 33 HOH HOH . 
E 5 HOH A 31 565 34 HOH HOH . 
E 5 HOH A 32 566 35 HOH HOH . 
E 5 HOH A 33 567 36 HOH HOH . 
E 5 HOH A 34 568 37 HOH HOH . 
E 5 HOH A 35 569 38 HOH HOH . 
E 5 HOH A 36 570 39 HOH HOH . 
E 5 HOH A 37 571 40 HOH HOH . 
E 5 HOH A 38 572 41 HOH HOH . 
E 5 HOH A 39 573 42 HOH HOH . 
E 5 HOH A 40 574 43 HOH HOH . 
E 5 HOH A 41 575 44 HOH HOH . 
E 5 HOH A 42 576 45 HOH HOH . 
E 5 HOH A 43 577 46 HOH HOH . 
E 5 HOH A 44 578 47 HOH HOH . 
E 5 HOH A 45 579 48 HOH HOH . 
E 5 HOH A 46 580 49 HOH HOH . 
E 5 HOH A 47 581 50 HOH HOH . 
E 5 HOH A 48 582 51 HOH HOH . 
E 5 HOH A 49 583 52 HOH HOH . 
E 5 HOH A 50 584 53 HOH HOH . 
E 5 HOH A 51 585 54 HOH HOH . 
E 5 HOH A 52 586 55 HOH HOH . 
E 5 HOH A 53 587 56 HOH HOH . 
E 5 HOH A 54 588 57 HOH HOH . 
E 5 HOH A 55 589 58 HOH HOH . 
E 5 HOH A 56 590 59 HOH HOH . 
E 5 HOH A 57 591 60 HOH HOH . 
E 5 HOH A 58 592 61 HOH HOH . 
E 5 HOH A 59 593 62 HOH HOH . 
E 5 HOH A 60 594 63 HOH HOH . 
E 5 HOH A 61 595 64 HOH HOH . 
E 5 HOH A 62 596 65 HOH HOH . 
E 5 HOH A 63 597 66 HOH HOH . 
E 5 HOH A 64 598 67 HOH HOH . 
E 5 HOH A 65 599 68 HOH HOH . 
E 5 HOH A 66 600 69 HOH HOH . 
E 5 HOH A 67 601 70 HOH HOH . 
E 5 HOH A 68 602 71 HOH HOH . 
E 5 HOH A 69 603 72 HOH HOH . 
E 5 HOH A 70 604 73 HOH HOH . 
E 5 HOH A 71 605 74 HOH HOH . 
E 5 HOH A 72 606 75 HOH HOH . 
E 5 HOH A 73 607 76 HOH HOH . 
E 5 HOH A 74 608 77 HOH HOH . 
E 5 HOH A 75 609 78 HOH HOH . 
E 5 HOH A 76 610 79 HOH HOH . 
E 5 HOH A 77 611 80 HOH HOH . 
E 5 HOH A 78 612 81 HOH HOH . 
E 5 HOH A 79 613 82 HOH HOH . 
E 5 HOH A 80 614 83 HOH HOH . 
E 5 HOH A 81 615 84 HOH HOH . 
E 5 HOH A 82 616 85 HOH HOH . 
E 5 HOH A 83 617 86 HOH HOH . 
E 5 HOH A 84 618 87 HOH HOH . 
E 5 HOH A 85 619 88 HOH HOH . 
E 5 HOH A 86 620 89 HOH HOH . 
E 5 HOH A 87 621 90 HOH HOH . 
E 5 HOH A 88 622 91 HOH HOH . 
E 5 HOH A 89 623 92 HOH HOH . 
E 5 HOH A 90 624 93 HOH HOH . 
E 5 HOH A 91 625 94 HOH HOH . 
E 5 HOH A 92 626 95 HOH HOH . 
E 5 HOH A 93 627 96 HOH HOH . 
E 5 HOH A 94 628 97 HOH HOH . 
E 5 HOH A 95 629 98 HOH HOH . 
E 5 HOH A 96 630 99 HOH HOH . 
E 5 HOH A 97 631 100 HOH HOH . 
E 5 HOH A 98 632 101 HOH HOH . 
E 5 HOH A 99 633 102 HOH HOH . 
E 5 HOH A 100 634 103 HOH HOH . 
E 5 HOH A 101 635 104 HOH HOH . 
E 5 HOH A 102 636 105 HOH HOH . 
E 5 HOH A 103 637 106 HOH HOH . 
E 5 HOH A 104 638 107 HOH HOH . 
E 5 HOH A 105 639 108 HOH HOH . 
E 5 HOH A 106 640 109 HOH HOH . 
E 5 HOH A 107 641 110 HOH HOH . 
E 5 HOH A 108 642 111 HOH HOH . 
E 5 HOH A 109 643 112 HOH HOH . 
E 5 HOH A 110 644 113 HOH HOH . 
E 5 HOH A 111 645 114 HOH HOH . 
E 5 HOH A 112 646 115 HOH HOH . 
E 5 HOH A 113 647 116 HOH HOH . 
E 5 HOH A 114 648 117 HOH HOH . 
E 5 HOH A 115 649 118 HOH HOH . 
E 5 HOH A 116 650 119 HOH HOH . 
E 5 HOH A 117 651 120 HOH HOH . 
E 5 HOH A 118 652 121 HOH HOH . 
E 5 HOH A 119 653 122 HOH HOH . 
E 5 HOH A 120 654 123 HOH HOH . 
E 5 HOH A 121 655 124 HOH HOH . 
E 5 HOH A 122 656 125 HOH HOH . 
E 5 HOH A 123 657 126 HOH HOH . 
E 5 HOH A 124 658 127 HOH HOH . 
E 5 HOH A 125 659 128 HOH HOH . 
E 5 HOH A 126 660 129 HOH HOH . 
E 5 HOH A 127 661 130 HOH HOH . 
E 5 HOH A 128 662 131 HOH HOH . 
E 5 HOH A 129 663 132 HOH HOH . 
E 5 HOH A 130 664 133 HOH HOH . 
E 5 HOH A 131 665 134 HOH HOH . 
E 5 HOH A 132 666 135 HOH HOH . 
E 5 HOH A 133 667 136 HOH HOH . 
E 5 HOH A 134 668 137 HOH HOH . 
E 5 HOH A 135 669 138 HOH HOH . 
E 5 HOH A 136 670 139 HOH HOH . 
E 5 HOH A 137 671 140 HOH HOH . 
E 5 HOH A 138 672 141 HOH HOH . 
E 5 HOH A 139 673 142 HOH HOH . 
E 5 HOH A 140 674 143 HOH HOH . 
E 5 HOH A 141 675 144 HOH HOH . 
E 5 HOH A 142 676 145 HOH HOH . 
E 5 HOH A 143 677 146 HOH HOH . 
E 5 HOH A 144 678 147 HOH HOH . 
E 5 HOH A 145 679 148 HOH HOH . 
E 5 HOH A 146 680 149 HOH HOH . 
E 5 HOH A 147 681 150 HOH HOH . 
E 5 HOH A 148 682 151 HOH HOH . 
E 5 HOH A 149 683 152 HOH HOH . 
E 5 HOH A 150 684 153 HOH HOH . 
E 5 HOH A 151 685 154 HOH HOH . 
E 5 HOH A 152 686 155 HOH HOH . 
E 5 HOH A 153 687 156 HOH HOH . 
E 5 HOH A 154 688 157 HOH HOH . 
E 5 HOH A 155 689 158 HOH HOH . 
E 5 HOH A 156 690 159 HOH HOH . 
E 5 HOH A 157 691 160 HOH HOH . 
E 5 HOH A 158 692 161 HOH HOH . 
E 5 HOH A 159 693 162 HOH HOH . 
E 5 HOH A 160 694 163 HOH HOH . 
E 5 HOH A 161 695 164 HOH HOH . 
E 5 HOH A 162 696 165 HOH HOH . 
E 5 HOH A 163 697 166 HOH HOH . 
E 5 HOH A 164 698 167 HOH HOH . 
E 5 HOH A 165 699 168 HOH HOH . 
E 5 HOH A 166 700 169 HOH HOH . 
E 5 HOH A 167 701 170 HOH HOH . 
E 5 HOH A 168 702 171 HOH HOH . 
E 5 HOH A 169 703 172 HOH HOH . 
E 5 HOH A 170 704 173 HOH HOH . 
E 5 HOH A 171 705 174 HOH HOH . 
E 5 HOH A 172 706 175 HOH HOH . 
E 5 HOH A 173 707 176 HOH HOH . 
E 5 HOH A 174 708 177 HOH HOH . 
E 5 HOH A 175 709 178 HOH HOH . 
E 5 HOH A 176 710 179 HOH HOH . 
E 5 HOH A 177 711 180 HOH HOH . 
E 5 HOH A 178 712 181 HOH HOH . 
E 5 HOH A 179 713 182 HOH HOH . 
E 5 HOH A 180 714 183 HOH HOH . 
E 5 HOH A 181 715 184 HOH HOH . 
E 5 HOH A 182 716 185 HOH HOH . 
E 5 HOH A 183 717 186 HOH HOH . 
E 5 HOH A 184 718 187 HOH HOH . 
E 5 HOH A 185 719 188 HOH HOH . 
E 5 HOH A 186 720 189 HOH HOH . 
E 5 HOH A 187 721 190 HOH HOH . 
E 5 HOH A 188 722 191 HOH HOH . 
E 5 HOH A 189 723 192 HOH HOH . 
E 5 HOH A 190 724 193 HOH HOH . 
E 5 HOH A 191 725 194 HOH HOH . 
E 5 HOH A 192 726 195 HOH HOH . 
E 5 HOH A 193 727 196 HOH HOH . 
E 5 HOH A 194 728 197 HOH HOH . 
E 5 HOH A 195 729 198 HOH HOH . 
E 5 HOH A 196 730 199 HOH HOH . 
E 5 HOH A 197 731 200 HOH HOH . 
E 5 HOH A 198 732 201 HOH HOH . 
E 5 HOH A 199 733 202 HOH HOH . 
E 5 HOH A 200 734 203 HOH HOH . 
E 5 HOH A 201 735 204 HOH HOH . 
E 5 HOH A 202 736 205 HOH HOH . 
E 5 HOH A 203 737 206 HOH HOH . 
E 5 HOH A 204 738 207 HOH HOH . 
E 5 HOH A 205 739 208 HOH HOH . 
E 5 HOH A 206 740 209 HOH HOH . 
E 5 HOH A 207 741 210 HOH HOH . 
E 5 HOH A 208 742 211 HOH HOH . 
E 5 HOH A 209 743 212 HOH HOH . 
E 5 HOH A 210 744 213 HOH HOH . 
E 5 HOH A 211 745 214 HOH HOH . 
E 5 HOH A 212 746 215 HOH HOH . 
E 5 HOH A 213 747 216 HOH HOH . 
E 5 HOH A 214 748 217 HOH HOH . 
E 5 HOH A 215 749 218 HOH HOH . 
E 5 HOH A 216 750 219 HOH HOH . 
E 5 HOH A 217 751 220 HOH HOH . 
E 5 HOH A 218 752 221 HOH HOH . 
E 5 HOH A 219 753 222 HOH HOH . 
E 5 HOH A 220 754 223 HOH HOH . 
E 5 HOH A 221 755 224 HOH HOH . 
E 5 HOH A 222 756 225 HOH HOH . 
E 5 HOH A 223 757 226 HOH HOH . 
E 5 HOH A 224 758 227 HOH HOH . 
E 5 HOH A 225 759 228 HOH HOH . 
E 5 HOH A 226 760 229 HOH HOH . 
E 5 HOH A 227 761 230 HOH HOH . 
E 5 HOH A 228 762 231 HOH HOH . 
E 5 HOH A 229 763 232 HOH HOH . 
E 5 HOH A 230 764 233 HOH HOH . 
E 5 HOH A 231 765 234 HOH HOH . 
E 5 HOH A 232 766 235 HOH HOH . 
E 5 HOH A 233 767 236 HOH HOH . 
E 5 HOH A 234 768 237 HOH HOH . 
E 5 HOH A 235 769 238 HOH HOH . 
E 5 HOH A 236 770 239 HOH HOH . 
E 5 HOH A 237 771 240 HOH HOH . 
E 5 HOH A 238 772 241 HOH HOH . 
E 5 HOH A 239 773 242 HOH HOH . 
E 5 HOH A 240 774 243 HOH HOH . 
E 5 HOH A 241 775 244 HOH HOH . 
E 5 HOH A 242 776 245 HOH HOH . 
E 5 HOH A 243 777 246 HOH HOH . 
E 5 HOH A 244 778 247 HOH HOH . 
E 5 HOH A 245 779 248 HOH HOH . 
E 5 HOH A 246 780 249 HOH HOH . 
E 5 HOH A 247 781 250 HOH HOH . 
E 5 HOH A 248 782 251 HOH HOH . 
E 5 HOH A 249 783 252 HOH HOH . 
E 5 HOH A 250 784 253 HOH HOH . 
E 5 HOH A 251 785 254 HOH HOH . 
E 5 HOH A 252 786 255 HOH HOH . 
E 5 HOH A 253 787 256 HOH HOH . 
E 5 HOH A 254 788 257 HOH HOH . 
E 5 HOH A 255 789 258 HOH HOH . 
E 5 HOH A 256 790 259 HOH HOH . 
E 5 HOH A 257 791 260 HOH HOH . 
E 5 HOH A 258 792 261 HOH HOH . 
E 5 HOH A 259 793 262 HOH HOH . 
E 5 HOH A 260 794 263 HOH HOH . 
E 5 HOH A 261 795 264 HOH HOH . 
E 5 HOH A 262 796 265 HOH HOH . 
E 5 HOH A 263 797 266 HOH HOH . 
E 5 HOH A 264 798 267 HOH HOH . 
E 5 HOH A 265 799 268 HOH HOH . 
E 5 HOH A 266 800 269 HOH HOH . 
E 5 HOH A 267 801 270 HOH HOH . 
E 5 HOH A 268 802 271 HOH HOH . 
E 5 HOH A 269 803 272 HOH HOH . 
E 5 HOH A 270 804 273 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 4 40.586 8.325 4.759 1 48.8 ? C1 GOL 3 A 1 
HETATM 2 O O1 GOL . . . D 4 39.801 7.743 5.809 1 51.43 ? O1 GOL 3 A 1 
HETATM 3 C C2 GOL . . . D 4 41.799 9.117 5.304 1 46.77 ? C2 GOL 3 A 1 
HETATM 4 O O2 GOL . . . D 4 42.946 8.888 4.468 1 48.57 ? O2 GOL 3 A 1 
HETATM 5 C C3 GOL . . . D 4 41.52 10.617 5.332 1 44.94 ? C3 GOL 3 A 1 
HETATM 6 O O3 GOL . . . D 4 40.406 10.932 6.138 1 38.18 ? O3 GOL 3 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           267 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#