data_1OPL # _model_server_result.job_id L1BUl8Tbtx838b6wz1vg_Q _model_server_result.datetime_utc '2024-11-23 03:22:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1opl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":538}' # _entry.id 1OPL # _exptl.entry_id 1OPL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.283 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6-(2,6-DICHLOROPHENYL)-2-{[3-(HYDROXYMETHYL)PHENYL]AMINO}-8-METHYLPYRIDO[2,3-D]PYRIMIDIN-7(8H)-ONE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1OPL _cell.length_a 77.017 _cell.length_b 273.384 _cell.length_c 124.384 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1OPL _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D 1 1 B,E 2 1 A,C,D 3 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_655 -x+1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 77.017 0 62.192 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N # _chem_comp.formula 'C21 H16 Cl2 N4 O2' _chem_comp.formula_weight 427.283 _chem_comp.id P16 _chem_comp.mon_nstd_flag . _chem_comp.name 6-(2,6-DICHLOROPHENYL)-2-{[3-(HYDROXYMETHYL)PHENYL]AMINO}-8-METHYLPYRIDO[2,3-D]PYRIMIDIN-7(8H)-ONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms PD166326 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C2 P16 sing 278 n n O1 HO1 P16 sing 279 n n C2 C3 P16 sing 280 n n C2 H21 P16 sing 281 n n C2 H22 P16 sing 282 n n C3 C4 P16 doub 283 n y C3 C8 P16 sing 284 n y C4 C5 P16 sing 285 n y C4 H4 P16 sing 286 n n C5 C6 P16 doub 287 n y C5 H5 P16 sing 288 n n C6 C7 P16 sing 289 n y C6 H6 P16 sing 290 n n C7 N9 P16 sing 291 n n C7 C8 P16 doub 292 n y N9 C10 P16 sing 293 n n N9 HN9 P16 sing 294 n n C10 N11 P16 doub 295 n y C10 N15 P16 sing 296 n y N11 C12 P16 sing 297 n y C12 C13 P16 doub 298 n y C12 H12 P16 sing 299 n n C13 C16 P16 sing 300 n y C13 C14 P16 sing 301 n y C16 C17 P16 doub 302 n y C16 H16 P16 sing 303 n n C17 C18 P16 sing 304 n y C17 C22 P16 sing 305 n y C18 O21 P16 doub 306 n n C18 N19 P16 sing 307 n y N19 C14 P16 sing 308 n y N19 C20 P16 sing 309 n n C14 N15 P16 doub 310 n y C20 H201 P16 sing 311 n n C20 H202 P16 sing 312 n n C20 H203 P16 sing 313 n n C22 C27 P16 doub 314 n y C22 C23 P16 sing 315 n y C27 CL28 P16 sing 316 n n C27 C26 P16 sing 317 n y C26 C25 P16 doub 318 n y C26 H26 P16 sing 319 n n C25 C24 P16 sing 320 n y C25 H25 P16 sing 321 n n C24 C23 P16 doub 322 n y C24 H24 P16 sing 323 n n C23 CL29 P16 sing 324 n n C8 H8 P16 sing 325 n n # _atom_sites.entry_id 1OPL _atom_sites.fract_transf_matrix[1][1] 0.012984 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.003658 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00804 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MYR A 1 538 1 MYR MYR . D 3 P16 A 1 539 1 P16 P16 . E 3 P16 B 1 538 2 P16 P16 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 P16 . . . E 3 60.939 13.032 53.767 1 152.41 ? O1 P16 538 B 1 HETATM 2 C C2 P16 . . . E 3 60.244 13.45 54.908 1 152.41 ? C2 P16 538 B 1 HETATM 3 C C3 P16 . . . E 3 61.133 14.147 55.923 1 152.41 ? C3 P16 538 B 1 HETATM 4 C C4 P16 . . . E 3 61.131 15.583 56.028 1 152.41 ? C4 P16 538 B 1 HETATM 5 C C5 P16 . . . E 3 61.961 16.229 56.965 1 152.41 ? C5 P16 538 B 1 HETATM 6 C C6 P16 . . . E 3 62.815 15.473 57.822 1 152.41 ? C6 P16 538 B 1 HETATM 7 C C7 P16 . . . E 3 62.825 14.042 57.729 1 152.41 ? C7 P16 538 B 1 HETATM 8 N N9 P16 . . . E 3 63.651 13.19 58.507 1 152.41 ? N9 P16 538 B 1 HETATM 9 C C10 P16 . . . E 3 64.798 13.519 59.181 1 152.41 ? C10 P16 538 B 1 HETATM 10 N N11 P16 . . . E 3 65.426 12.459 59.812 1 152.41 ? N11 P16 538 B 1 HETATM 11 C C12 P16 . . . E 3 66.571 12.726 60.463 1 152.41 ? C12 P16 538 B 1 HETATM 12 C C13 P16 . . . E 3 67.153 14.024 60.51 1 152.41 ? C13 P16 538 B 1 HETATM 13 C C16 P16 . . . E 3 68.376 14.323 61.196 1 152.41 ? C16 P16 538 B 1 HETATM 14 C C17 P16 . . . E 3 68.876 15.592 61.207 1 152.41 ? C17 P16 538 B 1 HETATM 15 C C18 P16 . . . E 3 68.136 16.719 60.529 1 152.41 ? C18 P16 538 B 1 HETATM 16 O O21 P16 . . . E 3 68.503 17.894 60.489 1 152.41 ? O21 P16 538 B 1 HETATM 17 N N19 P16 . . . E 3 66.914 16.377 59.848 1 152.41 ? N19 P16 538 B 1 HETATM 18 C C14 P16 . . . E 3 66.412 15.074 59.848 1 152.41 ? C14 P16 538 B 1 HETATM 19 N N15 P16 . . . E 3 65.265 14.797 59.179 1 152.41 ? N15 P16 538 B 1 HETATM 20 C C20 P16 . . . E 3 66.134 17.432 59.16 1 152.41 ? C20 P16 538 B 1 HETATM 21 C C22 P16 . . . E 3 70.144 15.938 61.882 1 152.41 ? C22 P16 538 B 1 HETATM 22 C C27 P16 . . . E 3 70.172 16.492 63.193 1 152.41 ? C27 P16 538 B 1 HETATM 23 CL CL28 P16 . . . E 3 68.678 16.73 64.072 1 152.41 ? CL28 P16 538 B 1 HETATM 24 C C26 P16 . . . E 3 71.414 16.836 63.821 1 152.41 ? C26 P16 538 B 1 HETATM 25 C C25 P16 . . . E 3 72.642 16.648 63.123 1 152.41 ? C25 P16 538 B 1 HETATM 26 C C24 P16 . . . E 3 72.648 16.091 61.811 1 152.41 ? C24 P16 538 B 1 HETATM 27 C C23 P16 . . . E 3 71.398 15.756 61.205 1 152.41 ? C23 P16 538 B 1 HETATM 28 CL CL29 P16 . . . E 3 71.423 15.073 59.605 1 152.41 ? CL29 P16 538 B 1 HETATM 29 C C8 P16 . . . E 3 61.977 13.39 56.771 1 152.41 ? C8 P16 538 B 1 # _model_server_stats.io_time_ms 26 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 29 #