data_1OPL
#
_model_server_result.job_id            UszUi9spS4wq8SFUfjcAKg 
_model_server_result.datetime_utc      '2024-11-23 03:40:06' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1opl 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":539}' 
#
_entry.id    1OPL 
#
_exptl.entry_id    1OPL 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              427.283 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            6-(2,6-DICHLOROPHENYL)-2-{[3-(HYDROXYMETHYL)PHENYL]AMINO}-8-METHYLPYRIDO[2,3-D]PYRIMIDIN-7(8H)-ONE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1OPL 
_cell.length_a            77.017 
_cell.length_b            273.384 
_cell.length_c            124.384 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1OPL 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
PISA dimeric 2 software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D 1 1 
B,E 2 1 
A,C,D 3 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 3_655 -x+1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 77.017 0 62.192 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
#
_chem_comp.formula           'C21 H16 Cl2 N4 O2' 
_chem_comp.formula_weight    427.283 
_chem_comp.id                P16 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              6-(2,6-DICHLOROPHENYL)-2-{[3-(HYDROXYMETHYL)PHENYL]AMINO}-8-METHYLPYRIDO[2,3-D]PYRIMIDIN-7(8H)-ONE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     PD166326 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1 C2 P16 sing 278 n n 
O1 HO1 P16 sing 279 n n 
C2 C3 P16 sing 280 n n 
C2 H21 P16 sing 281 n n 
C2 H22 P16 sing 282 n n 
C3 C4 P16 doub 283 n y 
C3 C8 P16 sing 284 n y 
C4 C5 P16 sing 285 n y 
C4 H4 P16 sing 286 n n 
C5 C6 P16 doub 287 n y 
C5 H5 P16 sing 288 n n 
C6 C7 P16 sing 289 n y 
C6 H6 P16 sing 290 n n 
C7 N9 P16 sing 291 n n 
C7 C8 P16 doub 292 n y 
N9 C10 P16 sing 293 n n 
N9 HN9 P16 sing 294 n n 
C10 N11 P16 doub 295 n y 
C10 N15 P16 sing 296 n y 
N11 C12 P16 sing 297 n y 
C12 C13 P16 doub 298 n y 
C12 H12 P16 sing 299 n n 
C13 C16 P16 sing 300 n y 
C13 C14 P16 sing 301 n y 
C16 C17 P16 doub 302 n y 
C16 H16 P16 sing 303 n n 
C17 C18 P16 sing 304 n y 
C17 C22 P16 sing 305 n y 
C18 O21 P16 doub 306 n n 
C18 N19 P16 sing 307 n y 
N19 C14 P16 sing 308 n y 
N19 C20 P16 sing 309 n n 
C14 N15 P16 doub 310 n y 
C20 H201 P16 sing 311 n n 
C20 H202 P16 sing 312 n n 
C20 H203 P16 sing 313 n n 
C22 C27 P16 doub 314 n y 
C22 C23 P16 sing 315 n y 
C27 CL28 P16 sing 316 n n 
C27 C26 P16 sing 317 n y 
C26 C25 P16 doub 318 n y 
C26 H26 P16 sing 319 n n 
C25 C24 P16 sing 320 n y 
C25 H25 P16 sing 321 n n 
C24 C23 P16 doub 322 n y 
C24 H24 P16 sing 323 n n 
C23 CL29 P16 sing 324 n n 
C8 H8 P16 sing 325 n n 
#
_atom_sites.entry_id                     1OPL 
_atom_sites.fract_transf_matrix[1][1]    0.012984 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.003658 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00804 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 MYR A 1 538 1 MYR MYR . 
D 3 P16 A 1 539 1 P16 P16 . 
E 3 P16 B 1 538 2 P16 P16 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O1 P16 . . . D 3 23.466 47.155 43.691 1 91.01 ? O1 P16 539 A 1 
HETATM 2 C C2 P16 . . . D 3 24.565 47.565 44.454 1 87.43 ? C2 P16 539 A 1 
HETATM 3 C C3 P16 . . . D 3 24.185 47.982 45.866 1 85.96 ? C3 P16 539 A 1 
HETATM 4 C C4 P16 . . . D 3 24.406 47.088 46.972 1 85.9 ? C4 P16 539 A 1 
HETATM 5 C C5 P16 . . . D 3 24.048 47.473 48.28 1 86 ? C5 P16 539 A 1 
HETATM 6 C C6 P16 . . . D 3 23.46 48.751 48.527 1 85.2 ? C6 P16 539 A 1 
HETATM 7 C C7 P16 . . . D 3 23.236 49.65 47.432 1 84.99 ? C7 P16 539 A 1 
HETATM 8 N N9 P16 . . . D 3 22.635 50.929 47.553 1 84.46 ? N9 P16 539 A 1 
HETATM 9 C C10 P16 . . . D 3 21.851 51.396 48.574 1 83.07 ? C10 P16 539 A 1 
HETATM 10 N N11 P16 . . . D 3 21.355 52.675 48.389 1 82.4 ? N11 P16 539 A 1 
HETATM 11 C C12 P16 . . . D 3 20.555 53.166 49.351 1 83.2 ? C12 P16 539 A 1 
HETATM 12 C C13 P16 . . . D 3 20.197 52.428 50.515 1 82.71 ? C13 P16 539 A 1 
HETATM 13 C C16 P16 . . . D 3 19.341 52.937 51.546 1 82.39 ? C16 P16 539 A 1 
HETATM 14 C C17 P16 . . . D 3 19.042 52.179 52.64 1 83.05 ? C17 P16 539 A 1 
HETATM 15 C C18 P16 . . . D 3 19.636 50.801 52.81 1 83.1 ? C18 P16 539 A 1 
HETATM 16 O O21 P16 . . . D 3 19.431 50.047 53.761 1 84.84 ? O21 P16 539 A 1 
HETATM 17 N N19 P16 . . . D 3 20.486 50.325 51.75 1 83.56 ? N19 P16 539 A 1 
HETATM 18 C C14 P16 . . . D 3 20.786 51.113 50.637 1 83.43 ? C14 P16 539 A 1 
HETATM 19 N N15 P16 . . . D 3 21.579 50.615 49.655 1 83.41 ? N15 P16 539 A 1 
HETATM 20 C C20 P16 . . . D 3 21.103 48.98 51.847 1 84.22 ? C20 P16 539 A 1 
HETATM 21 C C22 P16 . . . D 3 18.148 52.658 53.715 1 86.17 ? C22 P16 539 A 1 
HETATM 22 C C27 P16 . . . D 3 18.654 53.227 54.917 1 88.24 ? C27 P16 539 A 1 
HETATM 23 CL CL28 P16 . . . D 3 20.378 53.429 55.13 1 97.44 ? CL28 P16 539 A 1 
HETATM 24 C C26 P16 . . . D 3 17.766 53.667 55.954 1 86.89 ? C26 P16 539 A 1 
HETATM 25 C C25 P16 . . . D 3 16.358 53.513 55.799 1 85.09 ? C25 P16 539 A 1 
HETATM 26 C C24 P16 . . . D 3 15.819 52.951 54.605 1 85.19 ? C24 P16 539 A 1 
HETATM 27 C C23 P16 . . . D 3 16.723 52.518 53.586 1 85.54 ? C23 P16 539 A 1 
HETATM 28 CL CL29 P16 . . . D 3 16.052 51.837 52.132 1 89.44 ? CL29 P16 539 A 1 
HETATM 29 C C8 P16 . . . D 3 23.604 49.251 46.104 1 84.82 ? C8 P16 539 A 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           25 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           218 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           29 
#