data_1OPX # _model_server_result.job_id -EUHLEpulrHBVV3UCDqmYA _model_server_result.datetime_utc '2025-03-05 01:49:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1opx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":2000}' # _entry.id 1OPX # _exptl.entry_id 1OPX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 414.488 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NONAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1OPX _cell.length_a 111.28 _cell.length_b 111.28 _cell.length_c 230.24 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1OPX _symmetry.cell_setting ? _symmetry.Int_Tables_number 182 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 63 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA,PQS hexameric 6 author_and_software_defined_assembly 1 PISA dodecameric 12 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G 1 1,2,3 A,B,C,D,E,F,G 2 1,2,3,4,5,6 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -y+1,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 55.64 96.371307 0 3 'crystal symmetry operation' 3_565 -x+y,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -55.64 96.371307 0 4 'crystal symmetry operation' 10_665 -y+1,-x+1,-z+1/2 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 55.64 96.371307 115.12 5 'crystal symmetry operation' 11_555 -x+y,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 0 0 115.12 6 'crystal symmetry operation' 12_565 x,x-y+1,-z+1/2 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 -55.64 96.371307 115.12 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LYS 41 A LYS 41 1_555 A N MSE 42 A MSE 42 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale2 A C MSE 42 A MSE 42 1_555 A N GLU 43 A GLU 43 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale3 A C LEU 81 A LEU 81 1_555 A N MSE 82 A MSE 82 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale4 A C MSE 82 A MSE 82 1_555 A N HIS 83 A HIS 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale5 A C ILE 191 A ILE 191 1_555 A N MSE 192 A MSE 192 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale6 A C MSE 192 A MSE 192 1_555 A N GLU 193 A GLU 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale7 A C ARG 238 A ARG 238 1_555 A N MSE 239 A MSE 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale8 A C MSE 239 A MSE 239 1_555 A N ARG 240 A ARG 240 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale9 A C ASN 286 A ASN 286 1_555 A N MSE 287 A MSE 287 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale10 A C MSE 287 A MSE 287 1_555 A N SER 288 A SER 288 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale11 A C ASP 311 A ASP 311 1_555 A N MSE 312 A MSE 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale12 A C MSE 312 A MSE 312 1_555 A N ILE 313 A ILE 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale13 B C LYS 41 B LYS 1041 1_555 B N MSE 42 B MSE 1042 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale14 B C MSE 42 B MSE 1042 1_555 B N GLU 43 B GLU 1043 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale15 B C LEU 81 B LEU 1081 1_555 B N MSE 82 B MSE 1082 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale16 B C MSE 82 B MSE 1082 1_555 B N HIS 83 B HIS 1083 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale17 B C ILE 191 B ILE 1191 1_555 B N MSE 192 B MSE 1192 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale18 B C MSE 192 B MSE 1192 1_555 B N GLU 193 B GLU 1193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale19 B C ARG 238 B ARG 1238 1_555 B N MSE 239 B MSE 1239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale20 B C MSE 239 B MSE 1239 1_555 B N ARG 240 B ARG 1240 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale21 B C ASN 286 B ASN 1286 1_555 B N MSE 287 B MSE 1287 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale22 B C MSE 287 B MSE 1287 1_555 B N SER 288 B SER 1288 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale23 B C ASP 311 B ASP 1311 1_555 B N MSE 312 B MSE 1312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale24 B C MSE 312 B MSE 1312 1_555 B N ILE 313 B ILE 1313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? # _chem_comp.formula 'C18 H38 O10' _chem_comp.formula_weight 414.488 _chem_comp.id 2PE _chem_comp.mon_nstd_flag . _chem_comp.name 'NONAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C2 2PE sing 1 n n O1 HO1 2PE sing 2 n n C2 C3 2PE sing 3 n n C2 H21 2PE sing 4 n n C2 H22 2PE sing 5 n n C3 O4 2PE sing 6 n n C3 H31 2PE sing 7 n n C3 H32 2PE sing 8 n n O4 C5 2PE sing 9 n n C5 C6 2PE sing 10 n n C5 H51 2PE sing 11 n n C5 H52 2PE sing 12 n n C6 O7 2PE sing 13 n n C6 H61 2PE sing 14 n n C6 H62 2PE sing 15 n n O7 C8 2PE sing 16 n n C8 C9 2PE sing 17 n n C8 H81 2PE sing 18 n n C8 H82 2PE sing 19 n n C9 O10 2PE sing 20 n n C9 H91 2PE sing 21 n n C9 H92 2PE sing 22 n n O10 C11 2PE sing 23 n n C11 C12 2PE sing 24 n n C11 H111 2PE sing 25 n n C11 H112 2PE sing 26 n n C12 O13 2PE sing 27 n n C12 H121 2PE sing 28 n n C12 H122 2PE sing 29 n n O13 C14 2PE sing 30 n n C14 C15 2PE sing 31 n n C14 H141 2PE sing 32 n n C14 H142 2PE sing 33 n n C15 O16 2PE sing 34 n n C15 H151 2PE sing 35 n n C15 H152 2PE sing 36 n n O16 C17 2PE sing 37 n n C17 C18 2PE sing 38 n n C17 H171 2PE sing 39 n n C17 H172 2PE sing 40 n n C18 O19 2PE sing 41 n n C18 H181 2PE sing 42 n n C18 H182 2PE sing 43 n n O19 C20 2PE sing 44 n n C20 C21 2PE sing 45 n n C20 H201 2PE sing 46 n n C20 H202 2PE sing 47 n n C21 O22 2PE sing 48 n n C21 H211 2PE sing 49 n n C21 H212 2PE sing 50 n n O22 C23 2PE sing 51 n n C23 C24 2PE sing 52 n n C23 H231 2PE sing 53 n n C23 H232 2PE sing 54 n n C24 O25 2PE sing 55 n n C24 H241 2PE sing 56 n n C24 H242 2PE sing 57 n n O25 C26 2PE sing 58 n n C26 C27 2PE sing 59 n n C26 H261 2PE sing 60 n n C26 H262 2PE sing 61 n n C27 O28 2PE sing 62 n n C27 H271 2PE sing 63 n n C27 H272 2PE sing 64 n n O28 HO2 2PE sing 65 n n # _atom_sites.entry_id 1OPX _atom_sites.fract_transf_matrix[1][1] 0.008986 _atom_sites.fract_transf_matrix[1][2] 0.005188 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010377 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004343 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 4000 4000 SO4 SO4 . D 2 SO4 B 1 5000 5000 SO4 SO4 . E 3 2PE B 1 2000 2000 2PE PEG . F 4 HOH A 1 3001 3001 HOH HOH . F 4 HOH A 2 3002 3002 HOH HOH . F 4 HOH A 3 3003 3003 HOH HOH . F 4 HOH A 4 3004 3004 HOH HOH . F 4 HOH A 5 3005 3005 HOH HOH . F 4 HOH A 6 3006 3006 HOH HOH . F 4 HOH A 7 3010 3010 HOH HOH . F 4 HOH A 8 3012 3012 HOH HOH . F 4 HOH A 9 3013 3013 HOH HOH . F 4 HOH A 10 3014 3014 HOH HOH . F 4 HOH A 11 3015 3015 HOH HOH . F 4 HOH A 12 3016 3016 HOH HOH . F 4 HOH A 13 3017 3017 HOH HOH . F 4 HOH A 14 3018 3018 HOH HOH . F 4 HOH A 15 3019 3019 HOH HOH . F 4 HOH A 16 3020 3020 HOH HOH . F 4 HOH A 17 3021 3021 HOH HOH . F 4 HOH A 18 3022 3022 HOH HOH . F 4 HOH A 19 3023 3023 HOH HOH . G 4 HOH B 1 3007 3007 HOH HOH . G 4 HOH B 2 3008 3008 HOH HOH . G 4 HOH B 3 3009 3009 HOH HOH . G 4 HOH B 4 3011 3011 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 2PE . . . E 3 -37.774 24.314 33.788 1 39.68 ? O1 2PE 2000 B 1 HETATM 2 C C2 2PE . . . E 3 -36.56 23.62 33.844 1 41.27 ? C2 2PE 2000 B 1 HETATM 3 C C3 2PE . . . E 3 -36.282 23.361 32.376 1 40.7 ? C3 2PE 2000 B 1 HETATM 4 O O4 2PE . . . E 3 -35.125 22.508 32.27 1 42.5 ? O4 2PE 2000 B 1 HETATM 5 C C5 2PE . . . E 3 -35.375 21.185 32.912 1 42.86 ? C5 2PE 2000 B 1 HETATM 6 C C6 2PE . . . E 3 -34.233 20.227 32.84 1 43.07 ? C6 2PE 2000 B 1 HETATM 7 O O7 2PE . . . E 3 -34.009 19.8 34.187 1 43.2 ? O7 2PE 2000 B 1 HETATM 8 C C8 2PE . . . E 3 -32.921 18.849 34.343 1 41.93 ? C8 2PE 2000 B 1 HETATM 9 C C9 2PE . . . E 3 -32.718 18.539 35.8 1 39.14 ? C9 2PE 2000 B 1 HETATM 10 O O10 2PE . . . E 3 -31.405 17.948 36.138 1 37.95 ? O10 2PE 2000 B 1 HETATM 11 C C11 2PE . . . E 3 -30.363 18.623 36.899 1 38.19 ? C11 2PE 2000 B 1 HETATM 12 C C12 2PE . . . E 3 -28.966 18.007 37.185 1 40.51 ? C12 2PE 2000 B 1 HETATM 13 O O13 2PE . . . E 3 -28.888 16.668 36.684 1 40.75 ? O13 2PE 2000 B 1 HETATM 14 C C14 2PE . . . E 3 -27.641 16.335 36.015 1 40.81 ? C14 2PE 2000 B 1 HETATM 15 C C15 2PE . . . E 3 -27.309 14.933 36.545 1 40.67 ? C15 2PE 2000 B 1 HETATM 16 O O16 2PE . . . E 3 -25.899 14.862 36.323 1 40.15 ? O16 2PE 2000 B 1 HETATM 17 C C17 2PE . . . E 3 -25.189 13.678 36.791 1 37.29 ? C17 2PE 2000 B 1 HETATM 18 C C18 2PE . . . E 3 -23.654 13.885 36.655 1 34.24 ? C18 2PE 2000 B 1 HETATM 19 O O19 2PE . . . E 3 -23.394 13.924 35.213 1 35.7 ? O19 2PE 2000 B 1 HETATM 20 C C20 2PE . . . E 3 -22.174 13.16 34.982 1 37.27 ? C20 2PE 2000 B 1 HETATM 21 C C21 2PE . . . E 3 -21.817 13.1 33.506 1 38.49 ? C21 2PE 2000 B 1 HETATM 22 O O22 2PE . . . E 3 -21.372 11.687 33.273 1 39.7 ? O22 2PE 2000 B 1 HETATM 23 C C23 2PE . . . E 3 -20.949 11.428 31.853 1 38.93 ? C23 2PE 2000 B 1 HETATM 24 C C24 2PE . . . E 3 -20.601 9.959 31.809 1 39.96 ? C24 2PE 2000 B 1 HETATM 25 O O25 2PE . . . E 3 -19.646 9.559 32.862 1 42.09 ? O25 2PE 2000 B 1 HETATM 26 C C26 2PE . . . E 3 -19.224 8.234 32.815 1 43.71 ? C26 2PE 2000 B 1 HETATM 27 C C27 2PE . . . E 3 -18.288 8.163 34.022 1 44.94 ? C27 2PE 2000 B 1 HETATM 28 O O28 2PE . . . E 3 -16.966 7.971 33.524 1 44.16 ? O28 2PE 2000 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 28 #