data_1OPX # _model_server_result.job_id CtJ8umCK84E8_PMQk6m9Rg _model_server_result.datetime_utc '2025-03-05 01:17:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1opx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":4000}' # _entry.id 1OPX # _exptl.entry_id 1OPX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1OPX _cell.length_a 111.28 _cell.length_b 111.28 _cell.length_c 230.24 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1OPX _symmetry.cell_setting ? _symmetry.Int_Tables_number 182 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 63 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA,PQS hexameric 6 author_and_software_defined_assembly 1 PISA dodecameric 12 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G 1 1,2,3 A,B,C,D,E,F,G 2 1,2,3,4,5,6 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -y+1,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 55.64 96.371307 0 3 'crystal symmetry operation' 3_565 -x+y,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -55.64 96.371307 0 4 'crystal symmetry operation' 10_665 -y+1,-x+1,-z+1/2 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 55.64 96.371307 115.12 5 'crystal symmetry operation' 11_555 -x+y,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 0 0 115.12 6 'crystal symmetry operation' 12_565 x,x-y+1,-z+1/2 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 -55.64 96.371307 115.12 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LYS 41 A LYS 41 1_555 A N MSE 42 A MSE 42 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale2 A C MSE 42 A MSE 42 1_555 A N GLU 43 A GLU 43 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale3 A C LEU 81 A LEU 81 1_555 A N MSE 82 A MSE 82 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale4 A C MSE 82 A MSE 82 1_555 A N HIS 83 A HIS 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale5 A C ILE 191 A ILE 191 1_555 A N MSE 192 A MSE 192 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale6 A C MSE 192 A MSE 192 1_555 A N GLU 193 A GLU 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale7 A C ARG 238 A ARG 238 1_555 A N MSE 239 A MSE 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale8 A C MSE 239 A MSE 239 1_555 A N ARG 240 A ARG 240 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale9 A C ASN 286 A ASN 286 1_555 A N MSE 287 A MSE 287 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale10 A C MSE 287 A MSE 287 1_555 A N SER 288 A SER 288 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale11 A C ASP 311 A ASP 311 1_555 A N MSE 312 A MSE 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale12 A C MSE 312 A MSE 312 1_555 A N ILE 313 A ILE 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale13 B C LYS 41 B LYS 1041 1_555 B N MSE 42 B MSE 1042 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale14 B C MSE 42 B MSE 1042 1_555 B N GLU 43 B GLU 1043 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale15 B C LEU 81 B LEU 1081 1_555 B N MSE 82 B MSE 1082 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale16 B C MSE 82 B MSE 1082 1_555 B N HIS 83 B HIS 1083 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale17 B C ILE 191 B ILE 1191 1_555 B N MSE 192 B MSE 1192 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale18 B C MSE 192 B MSE 1192 1_555 B N GLU 193 B GLU 1193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale19 B C ARG 238 B ARG 1238 1_555 B N MSE 239 B MSE 1239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale20 B C MSE 239 B MSE 1239 1_555 B N ARG 240 B ARG 1240 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale21 B C ASN 286 B ASN 1286 1_555 B N MSE 287 B MSE 1287 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale22 B C MSE 287 B MSE 1287 1_555 B N SER 288 B SER 1288 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale23 B C ASP 311 B ASP 1311 1_555 B N MSE 312 B MSE 1312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale24 B C MSE 312 B MSE 1312 1_555 B N ILE 313 B ILE 1313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 374 n n S O2 SO4 doub 375 n n S O3 SO4 sing 376 n n S O4 SO4 sing 377 n n # _atom_sites.entry_id 1OPX _atom_sites.fract_transf_matrix[1][1] 0.008986 _atom_sites.fract_transf_matrix[1][2] 0.005188 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010377 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004343 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 4000 4000 SO4 SO4 . D 2 SO4 B 1 5000 5000 SO4 SO4 . E 3 2PE B 1 2000 2000 2PE PEG . F 4 HOH A 1 3001 3001 HOH HOH . F 4 HOH A 2 3002 3002 HOH HOH . F 4 HOH A 3 3003 3003 HOH HOH . F 4 HOH A 4 3004 3004 HOH HOH . F 4 HOH A 5 3005 3005 HOH HOH . F 4 HOH A 6 3006 3006 HOH HOH . F 4 HOH A 7 3010 3010 HOH HOH . F 4 HOH A 8 3012 3012 HOH HOH . F 4 HOH A 9 3013 3013 HOH HOH . F 4 HOH A 10 3014 3014 HOH HOH . F 4 HOH A 11 3015 3015 HOH HOH . F 4 HOH A 12 3016 3016 HOH HOH . F 4 HOH A 13 3017 3017 HOH HOH . F 4 HOH A 14 3018 3018 HOH HOH . F 4 HOH A 15 3019 3019 HOH HOH . F 4 HOH A 16 3020 3020 HOH HOH . F 4 HOH A 17 3021 3021 HOH HOH . F 4 HOH A 18 3022 3022 HOH HOH . F 4 HOH A 19 3023 3023 HOH HOH . G 4 HOH B 1 3007 3007 HOH HOH . G 4 HOH B 2 3008 3008 HOH HOH . G 4 HOH B 3 3009 3009 HOH HOH . G 4 HOH B 4 3011 3011 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . C 2 -35.865 56.025 21.93 1 25.18 ? S SO4 4000 A 1 HETATM 2 O O1 SO4 . . . C 2 -35.439 57.289 22.855 1 22.14 ? O1 SO4 4000 A 1 HETATM 3 O O2 SO4 . . . C 2 -35.648 56.471 20.562 1 25.73 ? O2 SO4 4000 A 1 HETATM 4 O O3 SO4 . . . C 2 -35.153 54.967 22.246 1 27.01 ? O3 SO4 4000 A 1 HETATM 5 O O4 SO4 . . . C 2 -37.289 55.911 22.174 1 23.52 ? O4 SO4 4000 A 1 # _model_server_stats.io_time_ms 78 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 5 #