data_1OQL # _model_server_result.job_id rzIfWfyNP3vkP-Qu6djfHg _model_server_result.datetime_utc '2025-04-06 04:31:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1oql # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":267}' # _entry.id 1OQL # _exptl.entry_id 1OQL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 180.156 _entity.id 5 _entity.src_method man _entity.type non-polymer _entity.pdbx_description beta-D-galactopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1OQL _cell.length_a 107.65 _cell.length_b 107.65 _cell.length_c 311.92 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1OQL _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 65 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? tetrameric 4 author_defined_assembly 1 PISA,PQS dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J 1 1,2 A,B,C,D,E,F,G,H,I,J 2 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 12_564 x,x-y+1,-z-1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 -53.825 93.227635 -51.986667 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 F N N ? 5 G N N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 3 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n C NAG 1 C 1 NAG E 290 NAG 3 n C NAG 2 C 2 NAG E 291 NAG 3 n D NAG 1 D 1 NAG F 300 NAG 3 n D NAG 2 D 2 NAG F 301 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 247 A CYS 247 1_555 B SG CYS 5 B CYS 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf2 B SG CYS 64 B CYS 64 1_555 B SG CYS 81 B CYS 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf3 B SG CYS 152 B CYS 152 1_555 B SG CYS 165 B CYS 165 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf4 B SG CYS 191 B CYS 191 1_555 B SG CYS 208 B CYS 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? covale ? covale1 A ND2 ASN 112 A ASN 112 1_555 E C1 NAG . A NAG 270 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.46 ? covale ? covale2 B ND2 ASN 61 B ASN 61 1_555 H C1 NAG . B NAG 280 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? covale ? covale3 B ND2 ASN 96 B ASN 96 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? covale ? covale4 B ND2 ASN 136 B ASN 136 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale5 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.387 ? covale ? covale6 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.384 ? # _chem_comp.formula 'C6 H12 O6' _chem_comp.formula_weight 180.156 _chem_comp.id GAL _chem_comp.mon_nstd_flag . _chem_comp.name beta-D-galactopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms beta-D-galactose;D-galactose;galactose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 GAL sing 83 n n C1 O1 GAL sing 84 n n C1 O5 GAL sing 85 n n C1 H1 GAL sing 86 n n C2 C3 GAL sing 87 n n C2 O2 GAL sing 88 n n C2 H2 GAL sing 89 n n C3 C4 GAL sing 90 n n C3 O3 GAL sing 91 n n C3 H3 GAL sing 92 n n C4 C5 GAL sing 93 n n C4 O4 GAL sing 94 n n C4 H4 GAL sing 95 n n C5 C6 GAL sing 96 n n C5 O5 GAL sing 97 n n C5 H5 GAL sing 98 n n C6 O6 GAL sing 99 n n C6 H61 GAL sing 100 n n C6 H62 GAL sing 101 n n O1 HO1 GAL sing 102 n n O2 HO2 GAL sing 103 n n O3 HO3 GAL sing 104 n n O4 HO4 GAL sing 105 n n O6 HO6 GAL sing 106 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version GAL DGalpb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 GAL b-D-galactopyranose 'COMMON NAME' GMML 1 GAL b-D-Galp 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 GAL Gal 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 1OQL _atom_sites.fract_transf_matrix[1][1] 0.009289 _atom_sites.fract_transf_matrix[1][2] 0.005363 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010726 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003206 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 NAG A 1 270 270 NAG NAG . F 5 GAL B 1 265 265 GAL GAL . G 5 GAL B 1 267 267 GAL GAL . H 4 NAG B 1 280 280 NAG NAG . I 6 HOH A 1 407 407 HOH HOH . I 6 HOH A 2 408 408 HOH HOH . I 6 HOH A 3 429 429 HOH HOH . I 6 HOH A 4 430 430 HOH HOH . I 6 HOH A 5 436 436 HOH HOH . I 6 HOH A 6 438 438 HOH HOH . I 6 HOH A 7 443 443 HOH HOH . I 6 HOH A 8 444 444 HOH HOH . J 6 HOH B 1 400 400 HOH HOH . J 6 HOH B 2 401 401 HOH HOH . J 6 HOH B 3 402 402 HOH HOH . J 6 HOH B 4 403 403 HOH HOH . J 6 HOH B 5 404 404 HOH HOH . J 6 HOH B 6 405 405 HOH HOH . J 6 HOH B 7 406 406 HOH HOH . J 6 HOH B 8 409 409 HOH HOH . J 6 HOH B 9 410 410 HOH HOH . J 6 HOH B 10 411 411 HOH HOH . J 6 HOH B 11 412 412 HOH HOH . J 6 HOH B 12 413 413 HOH HOH . J 6 HOH B 13 414 414 HOH HOH . J 6 HOH B 14 415 415 HOH HOH . J 6 HOH B 15 416 416 HOH HOH . J 6 HOH B 16 417 417 HOH HOH . J 6 HOH B 17 418 418 HOH HOH . J 6 HOH B 18 419 419 HOH HOH . J 6 HOH B 19 420 420 HOH HOH . J 6 HOH B 20 421 421 HOH HOH . J 6 HOH B 21 422 422 HOH HOH . J 6 HOH B 22 423 423 HOH HOH . J 6 HOH B 23 424 424 HOH HOH . J 6 HOH B 24 425 425 HOH HOH . J 6 HOH B 25 426 426 HOH HOH . J 6 HOH B 26 427 427 HOH HOH . J 6 HOH B 27 428 428 HOH HOH . J 6 HOH B 28 431 431 HOH HOH . J 6 HOH B 29 432 432 HOH HOH . J 6 HOH B 30 433 433 HOH HOH . J 6 HOH B 31 434 434 HOH HOH . J 6 HOH B 32 435 435 HOH HOH . J 6 HOH B 33 437 437 HOH HOH . J 6 HOH B 34 439 439 HOH HOH . J 6 HOH B 35 440 440 HOH HOH . J 6 HOH B 36 441 441 HOH HOH . J 6 HOH B 37 442 442 HOH HOH . J 6 HOH B 38 445 445 HOH HOH . J 6 HOH B 39 446 446 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GAL . . . G 5 1.446 15.293 -5.065 1 65.53 ? C1 GAL 267 B 1 HETATM 2 C C2 GAL . . . G 5 1.023 16.517 -4.222 1 65.44 ? C2 GAL 267 B 1 HETATM 3 C C3 GAL . . . G 5 0.004 17.403 -4.937 1 64.48 ? C3 GAL 267 B 1 HETATM 4 C C4 GAL . . . G 5 0.479 17.68 -6.339 1 64.32 ? C4 GAL 267 B 1 HETATM 5 C C5 GAL . . . G 5 0.615 16.36 -7.042 1 64.5 ? C5 GAL 267 B 1 HETATM 6 C C6 GAL . . . G 5 0.917 16.512 -8.523 1 65.07 ? C6 GAL 267 B 1 HETATM 7 O O1 GAL . . . G 5 2.62 14.765 -4.542 1 65.62 ? O1 GAL 267 B 1 HETATM 8 O O2 GAL . . . G 5 0.463 16.077 -2.989 1 64.51 ? O2 GAL 267 B 1 HETATM 9 O O3 GAL . . . G 5 -0.102 18.626 -4.241 1 64.73 ? O3 GAL 267 B 1 HETATM 10 O O4 GAL . . . G 5 1.754 18.287 -6.261 1 63.35 ? O4 GAL 267 B 1 HETATM 11 O O5 GAL . . . G 5 1.703 15.644 -6.439 1 65.18 ? O5 GAL 267 B 1 HETATM 12 O O6 GAL . . . G 5 0.838 15.264 -9.201 1 65.27 ? O6 GAL 267 B 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 239 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 12 #