data_1OQL # _model_server_result.job_id G2YkRuYAv_eaziI7ZVcL_Q _model_server_result.datetime_utc '2025-07-27 19:00:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1oql # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":270}' # _entry.id 1OQL # _exptl.entry_id 1OQL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1OQL _cell.length_a 107.65 _cell.length_b 107.65 _cell.length_c 311.92 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1OQL _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 65 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? tetrameric 4 author_defined_assembly 1 PISA,PQS dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J 1 1,2 A,B,C,D,E,F,G,H,I,J 2 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 12_564 x,x-y+1,-z-1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 -53.825 93.227635 -51.986667 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 H N N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 3 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n C NAG 1 C 1 NAG E 290 NAG 3 n C NAG 2 C 2 NAG E 291 NAG 3 n D NAG 1 D 1 NAG F 300 NAG 3 n D NAG 2 D 2 NAG F 301 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 247 A CYS 247 1_555 B SG CYS 5 B CYS 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf2 B SG CYS 64 B CYS 64 1_555 B SG CYS 81 B CYS 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf3 B SG CYS 152 B CYS 152 1_555 B SG CYS 165 B CYS 165 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf4 B SG CYS 191 B CYS 191 1_555 B SG CYS 208 B CYS 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? covale ? covale1 A ND2 ASN 112 A ASN 112 1_555 E C1 NAG . A NAG 270 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.46 ? covale ? covale2 B ND2 ASN 61 B ASN 61 1_555 H C1 NAG . B NAG 280 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? covale ? covale3 B ND2 ASN 96 B ASN 96 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? covale ? covale4 B ND2 ASN 136 B ASN 136 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale5 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.387 ? covale ? covale6 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.384 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 261 n n C1 O1 NAG sing 262 n n C1 O5 NAG sing 263 n n C1 H1 NAG sing 264 n n C2 C3 NAG sing 265 n n C2 N2 NAG sing 266 n n C2 H2 NAG sing 267 n n C3 C4 NAG sing 268 n n C3 O3 NAG sing 269 n n C3 H3 NAG sing 270 n n C4 C5 NAG sing 271 n n C4 O4 NAG sing 272 n n C4 H4 NAG sing 273 n n C5 C6 NAG sing 274 n n C5 O5 NAG sing 275 n n C5 H5 NAG sing 276 n n C6 O6 NAG sing 277 n n C6 H61 NAG sing 278 n n C6 H62 NAG sing 279 n n C7 C8 NAG sing 280 n n C7 N2 NAG sing 281 n n C7 O7 NAG doub 282 n n C8 H81 NAG sing 283 n n C8 H82 NAG sing 284 n n C8 H83 NAG sing 285 n n N2 HN2 NAG sing 286 n n O1 HO1 NAG sing 287 n n O3 HO3 NAG sing 288 n n O4 HO4 NAG sing 289 n n O6 HO6 NAG sing 290 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 1OQL _atom_sites.fract_transf_matrix[1][1] 0.009289 _atom_sites.fract_transf_matrix[1][2] 0.005363 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010726 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003206 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 NAG A 1 270 270 NAG NAG . F 5 GAL B 1 265 265 GAL GAL . G 5 GAL B 1 267 267 GAL GAL . H 4 NAG B 1 280 280 NAG NAG . I 6 HOH A 1 407 407 HOH HOH . I 6 HOH A 2 408 408 HOH HOH . I 6 HOH A 3 429 429 HOH HOH . I 6 HOH A 4 430 430 HOH HOH . I 6 HOH A 5 436 436 HOH HOH . I 6 HOH A 6 438 438 HOH HOH . I 6 HOH A 7 443 443 HOH HOH . I 6 HOH A 8 444 444 HOH HOH . J 6 HOH B 1 400 400 HOH HOH . J 6 HOH B 2 401 401 HOH HOH . J 6 HOH B 3 402 402 HOH HOH . J 6 HOH B 4 403 403 HOH HOH . J 6 HOH B 5 404 404 HOH HOH . J 6 HOH B 6 405 405 HOH HOH . J 6 HOH B 7 406 406 HOH HOH . J 6 HOH B 8 409 409 HOH HOH . J 6 HOH B 9 410 410 HOH HOH . J 6 HOH B 10 411 411 HOH HOH . J 6 HOH B 11 412 412 HOH HOH . J 6 HOH B 12 413 413 HOH HOH . J 6 HOH B 13 414 414 HOH HOH . J 6 HOH B 14 415 415 HOH HOH . J 6 HOH B 15 416 416 HOH HOH . J 6 HOH B 16 417 417 HOH HOH . J 6 HOH B 17 418 418 HOH HOH . J 6 HOH B 18 419 419 HOH HOH . J 6 HOH B 19 420 420 HOH HOH . J 6 HOH B 20 421 421 HOH HOH . J 6 HOH B 21 422 422 HOH HOH . J 6 HOH B 22 423 423 HOH HOH . J 6 HOH B 23 424 424 HOH HOH . J 6 HOH B 24 425 425 HOH HOH . J 6 HOH B 25 426 426 HOH HOH . J 6 HOH B 26 427 427 HOH HOH . J 6 HOH B 27 428 428 HOH HOH . J 6 HOH B 28 431 431 HOH HOH . J 6 HOH B 29 432 432 HOH HOH . J 6 HOH B 30 433 433 HOH HOH . J 6 HOH B 31 434 434 HOH HOH . J 6 HOH B 32 435 435 HOH HOH . J 6 HOH B 33 437 437 HOH HOH . J 6 HOH B 34 439 439 HOH HOH . J 6 HOH B 35 440 440 HOH HOH . J 6 HOH B 36 441 441 HOH HOH . J 6 HOH B 37 442 442 HOH HOH . J 6 HOH B 38 445 445 HOH HOH . J 6 HOH B 39 446 446 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . E 4 4.13 50.732 29.985 1 68.07 ? C1 NAG 270 A 1 HETATM 2 C C2 NAG . . . E 4 2.847 51.594 29.867 1 69.84 ? C2 NAG 270 A 1 HETATM 3 C C3 NAG . . . E 4 3.197 53.015 29.348 1 70.1 ? C3 NAG 270 A 1 HETATM 4 C C4 NAG . . . E 4 4.185 53.614 30.335 1 70.01 ? C4 NAG 270 A 1 HETATM 5 C C5 NAG . . . E 4 5.438 52.736 30.355 1 69.66 ? C5 NAG 270 A 1 HETATM 6 C C6 NAG . . . E 4 6.455 53.272 31.344 1 70.41 ? C6 NAG 270 A 1 HETATM 7 C C7 NAG . . . E 4 1.723 51.216 27.731 1 73.71 ? C7 NAG 270 A 1 HETATM 8 C C8 NAG . . . E 4 2.428 50.309 26.726 1 73.11 ? C8 NAG 270 A 1 HETATM 9 N N2 NAG . . . E 4 1.855 50.926 29.03 1 71.88 ? N2 NAG 270 A 1 HETATM 10 O O3 NAG . . . E 4 2.04 53.852 29.243 1 69.25 ? O3 NAG 270 A 1 HETATM 11 O O4 NAG . . . E 4 4.51 54.959 29.983 1 69.5 ? O4 NAG 270 A 1 HETATM 12 O O5 NAG . . . E 4 5.114 51.397 30.791 1 68.77 ? O5 NAG 270 A 1 HETATM 13 O O6 NAG . . . E 4 5.967 53.206 32.681 1 70.69 ? O6 NAG 270 A 1 HETATM 14 O O7 NAG . . . E 4 1.031 52.16 27.321 1 75.19 ? O7 NAG 270 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 14 #