data_1OR4 # _model_server_result.job_id soC0JOq2PXcJ7VpzW95FUg _model_server_result.datetime_utc '2024-11-27 11:46:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1or4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":181}' # _entry.id 1OR4 # _exptl.entry_id 1OR4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 26.017 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CYANIDE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1OR4 _cell.length_a 49.994 _cell.length_b 80.117 _cell.length_c 85.944 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1OR4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 123 A HIS 123 1_555 D FE HEM . A HEM 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? metalc ? metalc2 D FE HEM . A HEM 180 1_555 C C CYN . A CYN 181 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.615 ? metalc ? metalc3 D FE HEM . A HEM 180 1_555 C N CYN . A CYN 181 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.092 ? metalc ? metalc4 B NE2 HIS 123 B HIS 123 1_555 F FE HEM . B HEM 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? metalc ? metalc5 F FE HEM . B HEM 180 1_555 E C CYN . B CYN 181 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.489 ? metalc ? metalc6 F FE HEM . B HEM 180 1_555 E N CYN . B CYN 181 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.078 ? # _chem_comp.formula 'C N -1' _chem_comp.formula_weight 26.017 _chem_comp.id CYN _chem_comp.mon_nstd_flag . _chem_comp.name 'CYANIDE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _chem_comp_bond.atom_id_1 C _chem_comp_bond.atom_id_2 N _chem_comp_bond.comp_id CYN _chem_comp_bond.value_order trip _chem_comp_bond.pdbx_ordinal 70 _chem_comp_bond.pdbx_stereo_config n _chem_comp_bond.pdbx_aromatic_flag n # _atom_sites.entry_id 1OR4 _atom_sites.fract_transf_matrix[1][1] 0.020002 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012482 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011635 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CYN A 1 181 181 CYN CYN . D 3 HEM A 1 180 180 HEM HEM . E 2 CYN B 1 181 181 CYN CYN . F 3 HEM B 1 180 180 HEM HEM . G 4 HOH A 1 182 1 HOH HOH . G 4 HOH A 2 183 5 HOH HOH . G 4 HOH A 3 184 7 HOH HOH . G 4 HOH A 4 185 8 HOH HOH . G 4 HOH A 5 186 9 HOH HOH . G 4 HOH A 6 187 10 HOH HOH . G 4 HOH A 7 188 11 HOH HOH . G 4 HOH A 8 189 12 HOH HOH . G 4 HOH A 9 190 13 HOH HOH . G 4 HOH A 10 191 14 HOH HOH . G 4 HOH A 11 192 18 HOH HOH . G 4 HOH A 12 193 22 HOH HOH . G 4 HOH A 13 194 24 HOH HOH . G 4 HOH A 14 195 25 HOH HOH . G 4 HOH A 15 196 27 HOH HOH . G 4 HOH A 16 197 29 HOH HOH . G 4 HOH A 17 198 30 HOH HOH . G 4 HOH A 18 199 31 HOH HOH . G 4 HOH A 19 200 32 HOH HOH . G 4 HOH A 20 201 33 HOH HOH . G 4 HOH A 21 202 39 HOH HOH . G 4 HOH A 22 203 40 HOH HOH . G 4 HOH A 23 204 41 HOH HOH . G 4 HOH A 24 205 45 HOH HOH . G 4 HOH A 25 206 47 HOH HOH . G 4 HOH A 26 207 48 HOH HOH . G 4 HOH A 27 208 50 HOH HOH . G 4 HOH A 28 209 51 HOH HOH . G 4 HOH A 29 210 53 HOH HOH . G 4 HOH A 30 211 55 HOH HOH . G 4 HOH A 31 212 57 HOH HOH . G 4 HOH A 32 213 59 HOH HOH . G 4 HOH A 33 214 60 HOH HOH . G 4 HOH A 34 215 62 HOH HOH . G 4 HOH A 35 216 63 HOH HOH . G 4 HOH A 36 217 64 HOH HOH . G 4 HOH A 37 218 65 HOH HOH . G 4 HOH A 38 219 66 HOH HOH . G 4 HOH A 39 220 69 HOH HOH . G 4 HOH A 40 221 71 HOH HOH . G 4 HOH A 41 222 72 HOH HOH . G 4 HOH A 42 223 73 HOH HOH . G 4 HOH A 43 224 74 HOH HOH . G 4 HOH A 44 225 77 HOH HOH . G 4 HOH A 45 226 81 HOH HOH . G 4 HOH A 46 227 82 HOH HOH . G 4 HOH A 47 228 86 HOH HOH . G 4 HOH A 48 229 89 HOH HOH . G 4 HOH A 49 230 90 HOH HOH . G 4 HOH A 50 231 91 HOH HOH . G 4 HOH A 51 232 92 HOH HOH . G 4 HOH A 52 233 101 HOH HOH . G 4 HOH A 53 234 103 HOH HOH . G 4 HOH A 54 235 104 HOH HOH . G 4 HOH A 55 236 105 HOH HOH . G 4 HOH A 56 237 107 HOH HOH . G 4 HOH A 57 238 109 HOH HOH . G 4 HOH A 58 239 110 HOH HOH . G 4 HOH A 59 240 111 HOH HOH . G 4 HOH A 60 241 113 HOH HOH . G 4 HOH A 61 242 115 HOH HOH . G 4 HOH A 62 243 117 HOH HOH . G 4 HOH A 63 244 120 HOH HOH . G 4 HOH A 64 245 121 HOH HOH . G 4 HOH A 65 246 124 HOH HOH . G 4 HOH A 66 247 131 HOH HOH . G 4 HOH A 67 248 133 HOH HOH . G 4 HOH A 68 249 135 HOH HOH . G 4 HOH A 69 250 136 HOH HOH . G 4 HOH A 70 251 138 HOH HOH . G 4 HOH A 71 252 139 HOH HOH . G 4 HOH A 72 253 141 HOH HOH . G 4 HOH A 73 254 142 HOH HOH . G 4 HOH A 74 255 143 HOH HOH . G 4 HOH A 75 256 145 HOH HOH . G 4 HOH A 76 257 146 HOH HOH . G 4 HOH A 77 258 148 HOH HOH . G 4 HOH A 78 259 149 HOH HOH . G 4 HOH A 79 260 151 HOH HOH . G 4 HOH A 80 261 152 HOH HOH . G 4 HOH A 81 262 153 HOH HOH . G 4 HOH A 82 263 154 HOH HOH . G 4 HOH A 83 264 158 HOH HOH . G 4 HOH A 84 265 160 HOH HOH . G 4 HOH A 85 266 163 HOH HOH . G 4 HOH A 86 267 169 HOH HOH . G 4 HOH A 87 268 170 HOH HOH . G 4 HOH A 88 269 171 HOH HOH . G 4 HOH A 89 270 172 HOH HOH . G 4 HOH A 90 271 173 HOH HOH . G 4 HOH A 91 272 175 HOH HOH . G 4 HOH A 92 273 176 HOH HOH . G 4 HOH A 93 274 177 HOH HOH . G 4 HOH A 94 275 180 HOH HOH . G 4 HOH A 95 276 183 HOH HOH . G 4 HOH A 96 277 184 HOH HOH . G 4 HOH A 97 278 185 HOH HOH . G 4 HOH A 98 279 188 HOH HOH . G 4 HOH A 99 280 189 HOH HOH . G 4 HOH A 100 281 190 HOH HOH . G 4 HOH A 101 282 194 HOH HOH . G 4 HOH A 102 283 196 HOH HOH . G 4 HOH A 103 284 197 HOH HOH . G 4 HOH A 104 285 199 HOH HOH . H 4 HOH B 1 182 2 HOH HOH . H 4 HOH B 2 183 3 HOH HOH . H 4 HOH B 3 184 4 HOH HOH . H 4 HOH B 4 185 6 HOH HOH . H 4 HOH B 5 186 15 HOH HOH . H 4 HOH B 6 187 16 HOH HOH . H 4 HOH B 7 188 17 HOH HOH . H 4 HOH B 8 189 19 HOH HOH . H 4 HOH B 9 190 20 HOH HOH . H 4 HOH B 10 191 21 HOH HOH . H 4 HOH B 11 192 23 HOH HOH . H 4 HOH B 12 193 26 HOH HOH . H 4 HOH B 13 194 28 HOH HOH . H 4 HOH B 14 195 34 HOH HOH . H 4 HOH B 15 196 35 HOH HOH . H 4 HOH B 16 197 36 HOH HOH . H 4 HOH B 17 198 37 HOH HOH . H 4 HOH B 18 199 38 HOH HOH . H 4 HOH B 19 200 42 HOH HOH . H 4 HOH B 20 201 43 HOH HOH . H 4 HOH B 21 202 44 HOH HOH . H 4 HOH B 22 203 46 HOH HOH . H 4 HOH B 23 204 49 HOH HOH . H 4 HOH B 24 205 52 HOH HOH . H 4 HOH B 25 206 54 HOH HOH . H 4 HOH B 26 207 56 HOH HOH . H 4 HOH B 27 208 58 HOH HOH . H 4 HOH B 28 209 61 HOH HOH . H 4 HOH B 29 210 67 HOH HOH . H 4 HOH B 30 211 68 HOH HOH . H 4 HOH B 31 212 70 HOH HOH . H 4 HOH B 32 213 75 HOH HOH . H 4 HOH B 33 214 76 HOH HOH . H 4 HOH B 34 215 78 HOH HOH . H 4 HOH B 35 216 79 HOH HOH . H 4 HOH B 36 217 80 HOH HOH . H 4 HOH B 37 218 83 HOH HOH . H 4 HOH B 38 219 84 HOH HOH . H 4 HOH B 39 220 85 HOH HOH . H 4 HOH B 40 221 87 HOH HOH . H 4 HOH B 41 222 88 HOH HOH . H 4 HOH B 42 223 93 HOH HOH . H 4 HOH B 43 224 94 HOH HOH . H 4 HOH B 44 225 95 HOH HOH . H 4 HOH B 45 226 96 HOH HOH . H 4 HOH B 46 227 97 HOH HOH . H 4 HOH B 47 228 98 HOH HOH . H 4 HOH B 48 229 99 HOH HOH . H 4 HOH B 49 230 100 HOH HOH . H 4 HOH B 50 231 102 HOH HOH . H 4 HOH B 51 232 106 HOH HOH . H 4 HOH B 52 233 108 HOH HOH . H 4 HOH B 53 234 112 HOH HOH . H 4 HOH B 54 235 114 HOH HOH . H 4 HOH B 55 236 116 HOH HOH . H 4 HOH B 56 237 118 HOH HOH . H 4 HOH B 57 238 119 HOH HOH . H 4 HOH B 58 239 122 HOH HOH . H 4 HOH B 59 240 123 HOH HOH . H 4 HOH B 60 241 125 HOH HOH . H 4 HOH B 61 242 126 HOH HOH . H 4 HOH B 62 243 127 HOH HOH . H 4 HOH B 63 244 128 HOH HOH . H 4 HOH B 64 245 129 HOH HOH . H 4 HOH B 65 246 130 HOH HOH . H 4 HOH B 66 247 132 HOH HOH . H 4 HOH B 67 248 134 HOH HOH . H 4 HOH B 68 249 137 HOH HOH . H 4 HOH B 69 250 140 HOH HOH . H 4 HOH B 70 251 144 HOH HOH . H 4 HOH B 71 252 147 HOH HOH . H 4 HOH B 72 253 150 HOH HOH . H 4 HOH B 73 254 155 HOH HOH . H 4 HOH B 74 255 156 HOH HOH . H 4 HOH B 75 256 157 HOH HOH . H 4 HOH B 76 257 159 HOH HOH . H 4 HOH B 77 258 161 HOH HOH . H 4 HOH B 78 259 162 HOH HOH . H 4 HOH B 79 260 164 HOH HOH . H 4 HOH B 80 261 165 HOH HOH . H 4 HOH B 81 262 166 HOH HOH . H 4 HOH B 82 263 167 HOH HOH . H 4 HOH B 83 264 168 HOH HOH . H 4 HOH B 84 265 174 HOH HOH . H 4 HOH B 85 266 178 HOH HOH . H 4 HOH B 86 267 179 HOH HOH . H 4 HOH B 87 268 181 HOH HOH . H 4 HOH B 88 269 182 HOH HOH . H 4 HOH B 89 270 186 HOH HOH . H 4 HOH B 90 271 187 HOH HOH . H 4 HOH B 91 272 191 HOH HOH . H 4 HOH B 92 273 192 HOH HOH . H 4 HOH B 93 274 193 HOH HOH . H 4 HOH B 94 275 195 HOH HOH . H 4 HOH B 95 276 198 HOH HOH . H 4 HOH B 96 277 200 HOH HOH . H 4 HOH B 97 278 201 HOH HOH . H 4 HOH B 98 279 202 HOH HOH . H 4 HOH B 99 280 203 HOH HOH . H 4 HOH B 100 281 204 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C CYN . . . E 2 12.372 87.035 -9.457 1 11.39 ? C CYN 181 B 1 HETATM 2 N N CYN . . . E 2 12.925 88.498 -9.876 1 15.33 ? N CYN 181 B 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 383 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 2 #