data_1OR8 # _model_server_result.job_id Ooit0D6TIlfYKLOmdJWlLQ _model_server_result.datetime_utc '2024-12-02 20:31:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1or8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":698}' # _entry.id 1OR8 # _exptl.entry_id 1OR8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1OR8 _cell.length_a 86.5 _cell.length_b 86.5 _cell.length_c 142.4 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1OR8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 91 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS pentameric 5 author_and_software_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J 1 1 A,F,G,H,I,J 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_565 x,-y+1,-z+1/2 1 0 0 0 -1 0 0 0 -1 0 86.5 71.2 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 H N N ? 5 I N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 241 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 254 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 241 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 254 _struct_conn.ptnr2_symmetry 5_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.773 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 1OR8 _atom_sites.fract_transf_matrix[1][1] 0.011561 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011561 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007022 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 3 SAH A 1 354 354 SAH SAH . G 4 UNL A 1 582 582 UNL UNK . H 5 GOL A 1 698 698 GOL GCR . I 5 GOL A 1 699 699 GOL GCR . J 6 HOH A 1 355 355 HOH H2O . J 6 HOH A 2 356 356 HOH H2O . J 6 HOH A 3 357 357 HOH H2O . J 6 HOH A 4 358 358 HOH H2O . J 6 HOH A 5 361 361 HOH H2O . J 6 HOH A 6 362 362 HOH H2O . J 6 HOH A 7 363 363 HOH H2O . J 6 HOH A 8 364 364 HOH H2O . J 6 HOH A 9 365 365 HOH H2O . J 6 HOH A 10 366 366 HOH H2O . J 6 HOH A 11 367 367 HOH H2O . J 6 HOH A 12 368 368 HOH H2O . J 6 HOH A 13 369 369 HOH H2O . J 6 HOH A 14 371 371 HOH H2O . J 6 HOH A 15 372 372 HOH H2O . J 6 HOH A 16 373 373 HOH H2O . J 6 HOH A 17 375 375 HOH H2O . J 6 HOH A 18 376 376 HOH H2O . J 6 HOH A 19 377 377 HOH H2O . J 6 HOH A 20 378 378 HOH H2O . J 6 HOH A 21 380 380 HOH H2O . J 6 HOH A 22 381 381 HOH H2O . J 6 HOH A 23 382 382 HOH H2O . J 6 HOH A 24 383 383 HOH H2O . J 6 HOH A 25 384 384 HOH H2O . J 6 HOH A 26 385 385 HOH H2O . J 6 HOH A 27 386 386 HOH H2O . J 6 HOH A 28 387 387 HOH H2O . J 6 HOH A 29 388 388 HOH H2O . J 6 HOH A 30 390 390 HOH H2O . J 6 HOH A 31 391 391 HOH H2O . J 6 HOH A 32 394 394 HOH H2O . J 6 HOH A 33 396 396 HOH H2O . J 6 HOH A 34 397 397 HOH H2O . J 6 HOH A 35 398 398 HOH H2O . J 6 HOH A 36 399 399 HOH H2O . J 6 HOH A 37 400 400 HOH H2O . J 6 HOH A 38 401 401 HOH H2O . J 6 HOH A 39 403 403 HOH H2O . J 6 HOH A 40 404 404 HOH H2O . J 6 HOH A 41 405 405 HOH H2O . J 6 HOH A 42 406 406 HOH H2O . J 6 HOH A 43 408 408 HOH H2O . J 6 HOH A 44 409 409 HOH H2O . J 6 HOH A 45 410 410 HOH H2O . J 6 HOH A 46 413 413 HOH H2O . J 6 HOH A 47 414 414 HOH H2O . J 6 HOH A 48 416 416 HOH H2O . J 6 HOH A 49 417 417 HOH H2O . J 6 HOH A 50 419 419 HOH H2O . J 6 HOH A 51 420 420 HOH H2O . J 6 HOH A 52 423 423 HOH H2O . J 6 HOH A 53 424 424 HOH H2O . J 6 HOH A 54 425 425 HOH H2O . J 6 HOH A 55 428 428 HOH H2O . J 6 HOH A 56 429 429 HOH H2O . J 6 HOH A 57 431 431 HOH H2O . J 6 HOH A 58 432 432 HOH H2O . J 6 HOH A 59 433 433 HOH H2O . J 6 HOH A 60 435 435 HOH H2O . J 6 HOH A 61 436 436 HOH H2O . J 6 HOH A 62 444 444 HOH H2O . J 6 HOH A 63 446 446 HOH H2O . J 6 HOH A 64 447 447 HOH H2O . J 6 HOH A 65 448 448 HOH H2O . J 6 HOH A 66 449 449 HOH H2O . J 6 HOH A 67 450 450 HOH H2O . J 6 HOH A 68 451 451 HOH H2O . J 6 HOH A 69 452 452 HOH H2O . J 6 HOH A 70 455 455 HOH H2O . J 6 HOH A 71 456 456 HOH H2O . J 6 HOH A 72 457 457 HOH H2O . J 6 HOH A 73 458 458 HOH H2O . J 6 HOH A 74 460 460 HOH H2O . J 6 HOH A 75 461 461 HOH H2O . J 6 HOH A 76 462 462 HOH H2O . J 6 HOH A 77 463 463 HOH H2O . J 6 HOH A 78 464 464 HOH H2O . J 6 HOH A 79 465 465 HOH H2O . J 6 HOH A 80 468 468 HOH H2O . J 6 HOH A 81 470 470 HOH H2O . J 6 HOH A 82 471 471 HOH H2O . J 6 HOH A 83 472 472 HOH H2O . J 6 HOH A 84 473 473 HOH H2O . J 6 HOH A 85 474 474 HOH H2O . J 6 HOH A 86 475 475 HOH H2O . J 6 HOH A 87 477 477 HOH H2O . J 6 HOH A 88 478 478 HOH H2O . J 6 HOH A 89 481 481 HOH H2O . J 6 HOH A 90 482 482 HOH H2O . J 6 HOH A 91 483 483 HOH H2O . J 6 HOH A 92 487 487 HOH H2O . J 6 HOH A 93 488 488 HOH H2O . J 6 HOH A 94 489 489 HOH H2O . J 6 HOH A 95 490 490 HOH H2O . J 6 HOH A 96 491 491 HOH H2O . J 6 HOH A 97 495 495 HOH H2O . J 6 HOH A 98 497 497 HOH H2O . J 6 HOH A 99 498 498 HOH H2O . J 6 HOH A 100 499 499 HOH H2O . J 6 HOH A 101 500 500 HOH H2O . J 6 HOH A 102 503 503 HOH H2O . J 6 HOH A 103 504 504 HOH H2O . J 6 HOH A 104 508 508 HOH H2O . J 6 HOH A 105 509 509 HOH H2O . J 6 HOH A 106 510 510 HOH H2O . J 6 HOH A 107 511 511 HOH H2O . J 6 HOH A 108 512 512 HOH H2O . J 6 HOH A 109 516 516 HOH H2O . J 6 HOH A 110 517 517 HOH H2O . J 6 HOH A 111 519 519 HOH H2O . J 6 HOH A 112 520 520 HOH H2O . J 6 HOH A 113 521 521 HOH H2O . J 6 HOH A 114 523 523 HOH H2O . J 6 HOH A 115 524 524 HOH H2O . J 6 HOH A 116 526 526 HOH H2O . J 6 HOH A 117 527 527 HOH H2O . J 6 HOH A 118 528 528 HOH H2O . J 6 HOH A 119 529 529 HOH H2O . J 6 HOH A 120 530 530 HOH H2O . J 6 HOH A 121 531 531 HOH H2O . J 6 HOH A 122 532 532 HOH H2O . J 6 HOH A 123 533 533 HOH H2O . J 6 HOH A 124 534 534 HOH H2O . J 6 HOH A 125 535 535 HOH H2O . J 6 HOH A 126 537 537 HOH H2O . J 6 HOH A 127 538 538 HOH H2O . J 6 HOH A 128 539 539 HOH H2O . J 6 HOH A 129 540 540 HOH H2O . J 6 HOH A 130 541 541 HOH H2O . J 6 HOH A 131 542 542 HOH H2O . J 6 HOH A 132 543 543 HOH H2O . J 6 HOH A 133 544 544 HOH H2O . J 6 HOH A 134 546 546 HOH H2O . J 6 HOH A 135 547 547 HOH H2O . J 6 HOH A 136 548 548 HOH H2O . J 6 HOH A 137 549 549 HOH H2O . J 6 HOH A 138 552 552 HOH H2O . J 6 HOH A 139 554 554 HOH H2O . J 6 HOH A 140 555 555 HOH H2O . J 6 HOH A 141 556 556 HOH H2O . J 6 HOH A 142 557 557 HOH H2O . J 6 HOH A 143 559 559 HOH H2O . J 6 HOH A 144 561 561 HOH H2O . J 6 HOH A 145 562 562 HOH H2O . J 6 HOH A 146 564 564 HOH H2O . J 6 HOH A 147 565 565 HOH H2O . J 6 HOH A 148 566 566 HOH H2O . J 6 HOH A 149 567 567 HOH H2O . J 6 HOH A 150 568 568 HOH H2O . J 6 HOH A 151 569 569 HOH H2O . J 6 HOH A 152 570 570 HOH H2O . J 6 HOH A 153 571 571 HOH H2O . J 6 HOH A 154 572 572 HOH H2O . J 6 HOH A 155 573 573 HOH H2O . J 6 HOH A 156 574 574 HOH H2O . J 6 HOH A 157 575 575 HOH H2O . J 6 HOH A 158 576 576 HOH H2O . J 6 HOH A 159 577 577 HOH H2O . J 6 HOH A 160 579 579 HOH H2O . J 6 HOH A 161 581 581 HOH H2O . J 6 HOH A 162 597 597 HOH H2O . J 6 HOH A 163 600 600 HOH H2O . J 6 HOH A 164 602 602 HOH H2O . J 6 HOH A 165 605 605 HOH H2O . J 6 HOH A 166 607 607 HOH H2O . J 6 HOH A 167 608 608 HOH H2O . J 6 HOH A 168 609 609 HOH H2O . J 6 HOH A 169 610 610 HOH H2O . J 6 HOH A 170 611 611 HOH H2O . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . H 5 -4.929 61.91 36.16 1 40.27 ? C1 GOL 698 A 1 HETATM 2 O O1 GOL . . . H 5 -5.31 60.547 36.082 1 40.79 ? O1 GOL 698 A 1 HETATM 3 C C2 GOL . . . H 5 -6.124 62.82 35.894 1 40.39 ? C2 GOL 698 A 1 HETATM 4 O O2 GOL . . . H 5 -6.484 62.77 34.508 1 43.33 ? O2 GOL 698 A 1 HETATM 5 C C3 GOL . . . H 5 -5.812 64.253 36.314 1 38.19 ? C3 GOL 698 A 1 HETATM 6 O O3 GOL . . . H 5 -4.931 64.864 35.39 1 34.76 ? O3 GOL 698 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 358 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 6 #