data_1ORE # _model_server_result.job_id P1wqzxVFZp_zTHdH8JbRUg _model_server_result.datetime_utc '2024-11-12 22:20:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ore # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1001}' # _entry.id 1ORE # _exptl.entry_id 1ORE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 347.221 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ADENOSINE MONOPHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1ORE _cell.length_a 58.309 _cell.length_b 58.309 _cell.length_c 109.535 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1ORE _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/2 0 -1 0 -1 0 0 0 0 -1 58.309 58.309 54.7675 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H14 N5 O7 P' _chem_comp.formula_weight 347.221 _chem_comp.id AMP _chem_comp.mon_nstd_flag . _chem_comp.name 'ADENOSINE MONOPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P AMP doub 13 n n P O2P AMP sing 14 n n P O3P AMP sing 15 n n P O5' AMP sing 16 n n O2P HOP2 AMP sing 17 n n O3P HOP3 AMP sing 18 n n O5' C5' AMP sing 19 n n C5' C4' AMP sing 20 n n C5' "H5'1" AMP sing 21 n n C5' "H5'2" AMP sing 22 n n C4' O4' AMP sing 23 n n C4' C3' AMP sing 24 n n C4' H4' AMP sing 25 n n O4' C1' AMP sing 26 n n C3' O3' AMP sing 27 n n C3' C2' AMP sing 28 n n C3' H3' AMP sing 29 n n O3' HO3' AMP sing 30 n n C2' O2' AMP sing 31 n n C2' C1' AMP sing 32 n n C2' H2' AMP sing 33 n n O2' HO2' AMP sing 34 n n C1' N9 AMP sing 35 n n C1' H1' AMP sing 36 n n N9 C8 AMP sing 37 n y N9 C4 AMP sing 38 n y C8 N7 AMP doub 39 n y C8 H8 AMP sing 40 n n N7 C5 AMP sing 41 n y C5 C6 AMP sing 42 n y C5 C4 AMP doub 43 n y C6 N6 AMP sing 44 n n C6 N1 AMP doub 45 n y N6 HN61 AMP sing 46 n n N6 HN62 AMP sing 47 n n N1 C2 AMP sing 48 n y C2 N3 AMP doub 49 n y C2 H2 AMP sing 50 n n N3 C4 AMP sing 51 n y # _atom_sites.entry_id 1ORE _atom_sites.fract_transf_matrix[1][1] 0.01715 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01715 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00913 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CL A 1 2001 1 CL CL . C 3 AMP A 1 1001 1 AMP AMP . D 4 HOH A 1 2002 1 HOH HOH . D 4 HOH A 2 2003 2 HOH HOH . D 4 HOH A 3 2004 3 HOH HOH . D 4 HOH A 4 2005 4 HOH HOH . D 4 HOH A 5 2006 5 HOH HOH . D 4 HOH A 6 2007 6 HOH HOH . D 4 HOH A 7 2008 7 HOH HOH . D 4 HOH A 8 2009 8 HOH HOH . D 4 HOH A 9 2010 9 HOH HOH . D 4 HOH A 10 2011 10 HOH HOH . D 4 HOH A 11 2012 11 HOH HOH . D 4 HOH A 12 2013 12 HOH HOH . D 4 HOH A 13 2014 13 HOH HOH . D 4 HOH A 14 2015 14 HOH HOH . D 4 HOH A 15 2016 15 HOH HOH . D 4 HOH A 16 2017 16 HOH HOH . D 4 HOH A 17 2018 17 HOH HOH . D 4 HOH A 18 2019 18 HOH HOH . D 4 HOH A 19 2020 19 HOH HOH . D 4 HOH A 20 2021 20 HOH HOH . D 4 HOH A 21 2022 21 HOH HOH . D 4 HOH A 22 2023 22 HOH HOH . D 4 HOH A 23 2024 23 HOH HOH . D 4 HOH A 24 2025 24 HOH HOH . D 4 HOH A 25 2026 25 HOH HOH . D 4 HOH A 26 2027 26 HOH HOH . D 4 HOH A 27 2028 27 HOH HOH . D 4 HOH A 28 2029 28 HOH HOH . D 4 HOH A 29 2030 29 HOH HOH . D 4 HOH A 30 2031 30 HOH HOH . D 4 HOH A 31 2032 31 HOH HOH . D 4 HOH A 32 2033 32 HOH HOH . D 4 HOH A 33 2034 33 HOH HOH . D 4 HOH A 34 2035 34 HOH HOH . D 4 HOH A 35 2036 35 HOH HOH . D 4 HOH A 36 2037 36 HOH HOH . D 4 HOH A 37 2038 37 HOH HOH . D 4 HOH A 38 2039 38 HOH HOH . D 4 HOH A 39 2040 39 HOH HOH . D 4 HOH A 40 2041 40 HOH HOH . D 4 HOH A 41 2042 41 HOH HOH . D 4 HOH A 42 2043 42 HOH HOH . D 4 HOH A 43 2044 43 HOH HOH . D 4 HOH A 44 2045 44 HOH HOH . D 4 HOH A 45 2046 45 HOH HOH . D 4 HOH A 46 2047 46 HOH HOH . D 4 HOH A 47 2048 47 HOH HOH . D 4 HOH A 48 2049 48 HOH HOH . D 4 HOH A 49 2050 49 HOH HOH . D 4 HOH A 50 2051 50 HOH HOH . D 4 HOH A 51 2052 51 HOH HOH . D 4 HOH A 52 2053 52 HOH HOH . D 4 HOH A 53 2054 53 HOH HOH . D 4 HOH A 54 2055 54 HOH HOH . D 4 HOH A 55 2056 55 HOH HOH . D 4 HOH A 56 2057 56 HOH HOH . D 4 HOH A 57 2058 57 HOH HOH . D 4 HOH A 58 2059 58 HOH HOH . D 4 HOH A 59 2060 59 HOH HOH . D 4 HOH A 60 2061 60 HOH HOH . D 4 HOH A 61 2062 61 HOH HOH . D 4 HOH A 62 2063 62 HOH HOH . D 4 HOH A 63 2064 63 HOH HOH . D 4 HOH A 64 2065 64 HOH HOH . D 4 HOH A 65 2066 65 HOH HOH . D 4 HOH A 66 2067 66 HOH HOH . D 4 HOH A 67 2068 67 HOH HOH . D 4 HOH A 68 2069 68 HOH HOH . D 4 HOH A 69 2070 69 HOH HOH . D 4 HOH A 70 2071 70 HOH HOH . D 4 HOH A 71 2072 71 HOH HOH . D 4 HOH A 72 2073 72 HOH HOH . D 4 HOH A 73 2074 73 HOH HOH . D 4 HOH A 74 2075 74 HOH HOH . D 4 HOH A 75 2076 75 HOH HOH . D 4 HOH A 76 2077 76 HOH HOH . D 4 HOH A 77 2078 77 HOH HOH . D 4 HOH A 78 2079 78 HOH HOH . D 4 HOH A 79 2080 79 HOH HOH . D 4 HOH A 80 2081 80 HOH HOH . D 4 HOH A 81 2082 81 HOH HOH . D 4 HOH A 82 2083 82 HOH HOH . D 4 HOH A 83 2084 83 HOH HOH . D 4 HOH A 84 2085 84 HOH HOH . D 4 HOH A 85 2086 85 HOH HOH . D 4 HOH A 86 2087 86 HOH HOH . D 4 HOH A 87 2088 87 HOH HOH . D 4 HOH A 88 2089 88 HOH HOH . D 4 HOH A 89 2090 89 HOH HOH . D 4 HOH A 90 2091 90 HOH HOH . D 4 HOH A 91 2092 91 HOH HOH . D 4 HOH A 92 2093 92 HOH HOH . D 4 HOH A 93 2094 93 HOH HOH . D 4 HOH A 94 2095 94 HOH HOH . D 4 HOH A 95 2096 95 HOH HOH . D 4 HOH A 96 2097 96 HOH HOH . D 4 HOH A 97 2098 97 HOH HOH . D 4 HOH A 98 2099 98 HOH HOH . D 4 HOH A 99 2100 99 HOH HOH . D 4 HOH A 100 2101 100 HOH HOH . D 4 HOH A 101 2102 101 HOH HOH . D 4 HOH A 102 2103 102 HOH HOH . D 4 HOH A 103 2104 103 HOH HOH . D 4 HOH A 104 2105 104 HOH HOH . D 4 HOH A 105 2106 105 HOH HOH . D 4 HOH A 106 2107 106 HOH HOH . D 4 HOH A 107 2108 107 HOH HOH . D 4 HOH A 108 2109 108 HOH HOH . D 4 HOH A 109 2110 109 HOH HOH . D 4 HOH A 110 2111 110 HOH HOH . D 4 HOH A 111 2112 111 HOH HOH . D 4 HOH A 112 2113 112 HOH HOH . D 4 HOH A 113 2114 113 HOH HOH . D 4 HOH A 114 2115 114 HOH HOH . D 4 HOH A 115 2116 115 HOH HOH . D 4 HOH A 116 2117 116 HOH HOH . D 4 HOH A 117 2118 117 HOH HOH . D 4 HOH A 118 2119 118 HOH HOH . D 4 HOH A 119 2120 120 HOH HOH . D 4 HOH A 120 2121 121 HOH HOH . D 4 HOH A 121 2122 122 HOH HOH . D 4 HOH A 122 2123 123 HOH HOH . D 4 HOH A 123 2124 124 HOH HOH . D 4 HOH A 124 2125 125 HOH HOH . D 4 HOH A 125 2126 126 HOH HOH . D 4 HOH A 126 2127 127 HOH HOH . D 4 HOH A 127 2128 128 HOH HOH . D 4 HOH A 128 2129 129 HOH HOH . D 4 HOH A 129 2130 130 HOH HOH . D 4 HOH A 130 2131 131 HOH HOH . D 4 HOH A 131 2132 132 HOH HOH . D 4 HOH A 132 2133 133 HOH HOH . D 4 HOH A 133 2134 134 HOH HOH . D 4 HOH A 134 2135 135 HOH HOH . D 4 HOH A 135 2136 136 HOH HOH . D 4 HOH A 136 2137 137 HOH HOH . D 4 HOH A 137 2138 138 HOH HOH . D 4 HOH A 138 2139 139 HOH HOH . D 4 HOH A 139 2140 140 HOH HOH . D 4 HOH A 140 2141 141 HOH HOH . D 4 HOH A 141 2142 142 HOH HOH . D 4 HOH A 142 2143 143 HOH HOH . D 4 HOH A 143 2144 144 HOH HOH . D 4 HOH A 144 2145 145 HOH HOH . D 4 HOH A 145 2146 146 HOH HOH . D 4 HOH A 146 2147 147 HOH HOH . D 4 HOH A 147 2148 148 HOH HOH . D 4 HOH A 148 2149 149 HOH HOH . D 4 HOH A 149 2150 150 HOH HOH . D 4 HOH A 150 2151 151 HOH HOH . D 4 HOH A 151 2152 152 HOH HOH . D 4 HOH A 152 2153 153 HOH HOH . D 4 HOH A 153 2154 154 HOH HOH . D 4 HOH A 154 2155 155 HOH HOH . D 4 HOH A 155 2156 156 HOH HOH . D 4 HOH A 156 2157 157 HOH HOH . D 4 HOH A 157 2158 158 HOH HOH . D 4 HOH A 158 2159 159 HOH HOH . D 4 HOH A 159 2160 160 HOH HOH . D 4 HOH A 160 2161 161 HOH HOH . D 4 HOH A 161 2162 162 HOH HOH . D 4 HOH A 162 2163 163 HOH HOH . D 4 HOH A 163 2164 164 HOH HOH . D 4 HOH A 164 2165 165 HOH HOH . D 4 HOH A 165 2166 166 HOH HOH . D 4 HOH A 166 2167 167 HOH HOH . D 4 HOH A 167 2168 168 HOH HOH . D 4 HOH A 168 2169 169 HOH HOH . D 4 HOH A 169 2170 170 HOH HOH . D 4 HOH A 170 2171 171 HOH HOH . D 4 HOH A 171 2172 172 HOH HOH . D 4 HOH A 172 2173 173 HOH HOH . D 4 HOH A 173 2174 174 HOH HOH . D 4 HOH A 174 2175 175 HOH HOH . D 4 HOH A 175 2176 176 HOH HOH . D 4 HOH A 176 2177 177 HOH HOH . D 4 HOH A 177 2178 180 HOH HOH . D 4 HOH A 178 2179 182 HOH HOH . D 4 HOH A 179 2180 183 HOH HOH . D 4 HOH A 180 2181 184 HOH HOH . D 4 HOH A 181 2182 189 HOH HOH . D 4 HOH A 182 2183 190 HOH HOH . D 4 HOH A 183 2184 191 HOH HOH . D 4 HOH A 184 2185 192 HOH HOH . D 4 HOH A 185 2186 193 HOH HOH . D 4 HOH A 186 2187 194 HOH HOH . D 4 HOH A 187 2188 195 HOH HOH . D 4 HOH A 188 2189 196 HOH HOH . D 4 HOH A 189 2190 197 HOH HOH . D 4 HOH A 190 2191 198 HOH HOH . D 4 HOH A 191 2192 199 HOH HOH . D 4 HOH A 192 2193 200 HOH HOH . D 4 HOH A 193 2194 201 HOH HOH . D 4 HOH A 194 2195 202 HOH HOH . D 4 HOH A 195 2196 203 HOH HOH . D 4 HOH A 196 2197 204 HOH HOH . D 4 HOH A 197 2198 205 HOH HOH . D 4 HOH A 198 2199 206 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P AMP . . . C 3 8.478 29.634 22.346 1 10 ? P AMP 1001 A 1 HETATM 2 O O1P AMP . . . C 3 8.87 30.732 21.392 1 10.71 ? O1P AMP 1001 A 1 HETATM 3 O O2P AMP . . . C 3 9.046 28.302 21.785 1 6.92 ? O2P AMP 1001 A 1 HETATM 4 O O3P AMP . . . C 3 6.978 29.682 22.642 1 7.65 ? O3P AMP 1001 A 1 HETATM 5 O O5' AMP . . . C 3 9.17 29.89 23.773 1 10.96 ? O5' AMP 1001 A 1 HETATM 6 C C5' AMP . . . C 3 10.527 29.509 23.913 1 13.18 ? C5' AMP 1001 A 1 HETATM 7 C C4' AMP . . . C 3 11.332 30.724 24.382 1 14.21 ? C4' AMP 1001 A 1 HETATM 8 O O4' AMP . . . C 3 10.727 31.414 25.494 1 14.92 ? O4' AMP 1001 A 1 HETATM 9 C C3' AMP . . . C 3 12.692 30.257 24.905 1 15.54 ? C3' AMP 1001 A 1 HETATM 10 O O3' AMP . . . C 3 13.594 31.337 24.68 1 16.22 ? O3' AMP 1001 A 1 HETATM 11 C C2' AMP . . . C 3 12.432 29.956 26.38 1 13.83 ? C2' AMP 1001 A 1 HETATM 12 O O2' AMP . . . C 3 13.587 30.242 27.176 1 13.59 ? O2' AMP 1001 A 1 HETATM 13 C C1' AMP . . . C 3 11.2 30.848 26.717 1 12.71 ? C1' AMP 1001 A 1 HETATM 14 N N9 AMP . . . C 3 10.117 30.077 27.363 1 11.57 ? N9 AMP 1001 A 1 HETATM 15 C C8 AMP . . . C 3 8.841 29.836 26.891 1 12.56 ? C8 AMP 1001 A 1 HETATM 16 N N7 AMP . . . C 3 8.164 29.099 27.799 1 12.44 ? N7 AMP 1001 A 1 HETATM 17 C C5 AMP . . . C 3 8.967 28.875 28.867 1 10.23 ? C5 AMP 1001 A 1 HETATM 18 C C6 AMP . . . C 3 8.759 28.208 30.073 1 10.63 ? C6 AMP 1001 A 1 HETATM 19 N N6 AMP . . . C 3 7.575 27.62 30.362 1 6.85 ? N6 AMP 1001 A 1 HETATM 20 N N1 AMP . . . C 3 9.804 28.198 31.003 1 7.49 ? N1 AMP 1001 A 1 HETATM 21 C C2 AMP . . . C 3 11.008 28.783 30.695 1 8.82 ? C2 AMP 1001 A 1 HETATM 22 N N3 AMP . . . C 3 11.196 29.432 29.51 1 9.36 ? N3 AMP 1001 A 1 HETATM 23 C C4 AMP . . . C 3 10.18 29.51 28.619 1 10.81 ? C4 AMP 1001 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 221 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 23 #