data_1ORF
#
_model_server_result.job_id            K-P8_nOw8QAnhztvXQTi7w 
_model_server_result.datetime_utc      '2024-11-25 23:53:43' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1orf 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":1}' 
#
_entry.id    1ORF 
#
_exptl.entry_id    1ORF 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     'solid phase peptide synthesis' 
_entity.formula_weight              453.986 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            D-phenylalanyl-N-[(2S,3S)-6-{[amino(iminio)methyl]amino}-1-chloro-2-hydroxyhexan-3-yl]-L-prolinamide 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1ORF 
_cell.length_a            115.034 
_cell.length_b            145.022 
_cell.length_c            39.555 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1ORF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 3_555 -x,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 0 0 19.7775 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 26 A CYS 42 1_555 A SG CYS 42 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? 
disulf ? disulf2 A SG CYS 77 A CYS 93 1_555 A SG CYS 77 A CYS 93 3_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? 
disulf ? disulf3 A SG CYS 120 A CYS 136 1_555 A SG CYS 190 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? 
disulf ? disulf4 A SG CYS 151 A CYS 168 1_555 A SG CYS 169 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? 
disulf ? disulf5 A SG CYS 180 A CYS 191 1_555 A SG CYS 206 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
covale ? covale1 B C3 0G6 . A 0G6 1 1_555 A NE2 HIS 41 A HIS 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.539 ? 
covale ? covale2 B C2 0G6 . A 0G6 1 1_555 A OG SER 184 A SER 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.381 ? 
#
_chem_comp.formula           'C21 H34 Cl N6 O3 1' 
_chem_comp.formula_weight    453.986 
_chem_comp.id                0G6 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              D-phenylalanyl-N-[(2S,3S)-6-{[amino(iminio)methyl]amino}-1-chloro-2-hydroxyhexan-3-yl]-L-prolinamide 
_chem_comp.type              peptide-like 
_chem_comp.pdbx_synonyms     PPACK 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA 0G6 sing 1 n n 
N H 0G6 sing 2 n n 
N H2 0G6 sing 3 n n 
CA C 0G6 sing 4 n n 
CA CB 0G6 sing 5 n n 
CA HA 0G6 sing 6 n n 
C O 0G6 doub 7 n n 
C N1 0G6 sing 8 n n 
CB CG 0G6 sing 9 n n 
CB HB2 0G6 sing 10 n n 
CB HB3 0G6 sing 11 n n 
CG CD1 0G6 doub 12 n y 
CG CD2 0G6 sing 13 n y 
CD1 CE1 0G6 sing 14 n y 
CD1 HD1 0G6 sing 15 n n 
CD2 CE2 0G6 doub 16 n y 
CD2 HD2 0G6 sing 17 n n 
CE1 CZ 0G6 doub 18 n y 
CE1 HE1 0G6 sing 19 n n 
CE2 CZ 0G6 sing 20 n y 
CE2 HE2 0G6 sing 21 n n 
CZ HZ 0G6 sing 22 n n 
N1 CA1 0G6 sing 23 n n 
N1 CD 0G6 sing 24 n n 
CA1 C1 0G6 sing 25 n n 
CA1 CB1 0G6 sing 26 n n 
CA1 HA1 0G6 sing 27 n n 
C1 O1 0G6 doub 28 n n 
C1 N2 0G6 sing 29 n n 
CB1 CG1 0G6 sing 30 n n 
CB1 HB21 0G6 sing 31 n n 
CB1 HB31 0G6 sing 32 n n 
CG1 CD 0G6 sing 33 n n 
CG1 HG2 0G6 sing 34 n n 
CG1 HG3 0G6 sing 35 n n 
CD HD21 0G6 sing 36 n n 
CD HD3 0G6 sing 37 n n 
N2 CA2 0G6 sing 38 n n 
N2 H1 0G6 sing 39 n n 
CA2 C2 0G6 sing 40 n n 
CA2 CB2 0G6 sing 41 n n 
CA2 HA2 0G6 sing 42 n n 
C2 O2 0G6 sing 43 n n 
C2 C3 0G6 sing 44 n n 
CB2 CG2 0G6 sing 45 n n 
CB2 HB22 0G6 sing 46 n n 
CB2 HB32 0G6 sing 47 n n 
CG2 CD3 0G6 sing 48 n n 
CG2 HG21 0G6 sing 49 n n 
CG2 HG31 0G6 sing 50 n n 
CD3 NE 0G6 sing 51 n n 
CD3 HD22 0G6 sing 52 n n 
CD3 HD31 0G6 sing 53 n n 
NE CZ1 0G6 sing 54 n n 
NE HE 0G6 sing 55 n n 
CZ1 NH1 0G6 sing 56 n n 
CZ1 NH2 0G6 doub 57 n n 
NH1 HH11 0G6 sing 58 n n 
NH1 HH12 0G6 sing 59 n n 
NH2 HH21 0G6 sing 60 n n 
NH2 HH22 0G6 sing 61 n n 
C3 H11 0G6 sing 62 n n 
C3 H21 0G6 sing 63 n n 
CL C3 0G6 sing 64 n n 
C2 H33 0G6 sing 65 n n 
O2 H34 0G6 sing 66 n n 
#
_atom_sites.entry_id                     1ORF 
_atom_sites.fract_transf_matrix[1][1]    0.008693 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006896 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.025281 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 0G6 A 1 1 1 0G6 DPN . 
C 3 SO4 A 1 247 1 SO4 SO4 . 
D 4 HOH A 1 248 3 HOH HOH . 
D 4 HOH A 2 249 4 HOH HOH . 
D 4 HOH A 3 250 5 HOH HOH . 
D 4 HOH A 4 251 6 HOH HOH . 
D 4 HOH A 5 252 7 HOH HOH . 
D 4 HOH A 6 253 8 HOH HOH . 
D 4 HOH A 7 254 9 HOH HOH . 
D 4 HOH A 8 255 10 HOH HOH . 
D 4 HOH A 9 256 11 HOH HOH . 
D 4 HOH A 10 257 12 HOH HOH . 
D 4 HOH A 11 258 13 HOH HOH . 
D 4 HOH A 12 259 14 HOH HOH . 
D 4 HOH A 13 260 15 HOH HOH . 
D 4 HOH A 14 261 16 HOH HOH . 
D 4 HOH A 15 262 17 HOH HOH . 
D 4 HOH A 16 263 18 HOH HOH . 
D 4 HOH A 17 264 19 HOH HOH . 
D 4 HOH A 18 265 20 HOH HOH . 
D 4 HOH A 19 266 21 HOH HOH . 
D 4 HOH A 20 267 22 HOH HOH . 
D 4 HOH A 21 268 23 HOH HOH . 
D 4 HOH A 22 269 25 HOH HOH . 
D 4 HOH A 23 270 26 HOH HOH . 
D 4 HOH A 24 271 27 HOH HOH . 
D 4 HOH A 25 272 28 HOH HOH . 
D 4 HOH A 26 273 29 HOH HOH . 
D 4 HOH A 27 274 30 HOH HOH . 
D 4 HOH A 28 275 31 HOH HOH . 
D 4 HOH A 29 276 32 HOH HOH . 
D 4 HOH A 30 277 33 HOH HOH . 
D 4 HOH A 31 278 34 HOH HOH . 
D 4 HOH A 32 279 35 HOH HOH . 
D 4 HOH A 33 280 36 HOH HOH . 
D 4 HOH A 34 281 37 HOH HOH . 
D 4 HOH A 35 282 38 HOH HOH . 
D 4 HOH A 36 283 39 HOH HOH . 
D 4 HOH A 37 284 40 HOH HOH . 
D 4 HOH A 38 285 41 HOH HOH . 
D 4 HOH A 39 286 42 HOH HOH . 
D 4 HOH A 40 287 43 HOH HOH . 
D 4 HOH A 41 288 44 HOH HOH . 
D 4 HOH A 42 289 45 HOH HOH . 
D 4 HOH A 43 290 46 HOH HOH . 
D 4 HOH A 44 291 47 HOH HOH . 
D 4 HOH A 45 292 48 HOH HOH . 
D 4 HOH A 46 293 49 HOH HOH . 
D 4 HOH A 47 294 50 HOH HOH . 
D 4 HOH A 48 295 51 HOH HOH . 
D 4 HOH A 49 296 52 HOH HOH . 
D 4 HOH A 50 297 54 HOH HOH . 
D 4 HOH A 51 298 55 HOH HOH . 
D 4 HOH A 52 299 56 HOH HOH . 
D 4 HOH A 53 300 57 HOH HOH . 
D 4 HOH A 54 301 58 HOH HOH . 
D 4 HOH A 55 302 59 HOH HOH . 
D 4 HOH A 56 303 60 HOH HOH . 
D 4 HOH A 57 304 61 HOH HOH . 
D 4 HOH A 58 305 62 HOH HOH . 
D 4 HOH A 59 306 64 HOH HOH . 
D 4 HOH A 60 307 65 HOH HOH . 
D 4 HOH A 61 308 66 HOH HOH . 
D 4 HOH A 62 309 67 HOH HOH . 
D 4 HOH A 63 310 68 HOH HOH . 
D 4 HOH A 64 311 69 HOH HOH . 
D 4 HOH A 65 312 70 HOH HOH . 
D 4 HOH A 66 313 71 HOH HOH . 
D 4 HOH A 67 314 72 HOH HOH . 
D 4 HOH A 68 315 73 HOH HOH . 
D 4 HOH A 69 316 74 HOH HOH . 
D 4 HOH A 70 317 75 HOH HOH . 
D 4 HOH A 71 318 76 HOH HOH . 
D 4 HOH A 72 319 77 HOH HOH . 
D 4 HOH A 73 320 78 HOH HOH . 
D 4 HOH A 74 321 79 HOH HOH . 
D 4 HOH A 75 322 80 HOH HOH . 
D 4 HOH A 76 323 81 HOH HOH . 
D 4 HOH A 77 324 82 HOH HOH . 
D 4 HOH A 78 325 83 HOH HOH . 
D 4 HOH A 79 326 84 HOH HOH . 
D 4 HOH A 80 327 85 HOH HOH . 
D 4 HOH A 81 328 86 HOH HOH . 
D 4 HOH A 82 329 87 HOH HOH . 
D 4 HOH A 83 330 88 HOH HOH . 
D 4 HOH A 84 331 89 HOH HOH . 
D 4 HOH A 85 332 90 HOH HOH . 
D 4 HOH A 86 333 91 HOH HOH . 
D 4 HOH A 87 334 92 HOH HOH . 
D 4 HOH A 88 335 93 HOH HOH . 
D 4 HOH A 89 336 94 HOH HOH . 
D 4 HOH A 90 337 95 HOH HOH . 
D 4 HOH A 91 338 96 HOH HOH . 
D 4 HOH A 92 339 97 HOH HOH . 
D 4 HOH A 93 340 98 HOH HOH . 
D 4 HOH A 94 341 99 HOH HOH . 
D 4 HOH A 95 342 100 HOH HOH . 
D 4 HOH A 96 343 101 HOH HOH . 
D 4 HOH A 97 344 102 HOH HOH . 
D 4 HOH A 98 345 103 HOH HOH . 
D 4 HOH A 99 346 104 HOH HOH . 
D 4 HOH A 100 347 105 HOH HOH . 
D 4 HOH A 101 348 106 HOH HOH . 
D 4 HOH A 102 349 107 HOH HOH . 
D 4 HOH A 103 350 108 HOH HOH . 
D 4 HOH A 104 351 109 HOH HOH . 
D 4 HOH A 105 352 110 HOH HOH . 
D 4 HOH A 106 353 111 HOH HOH . 
D 4 HOH A 107 354 112 HOH HOH . 
D 4 HOH A 108 355 113 HOH HOH . 
D 4 HOH A 109 356 114 HOH HOH . 
D 4 HOH A 110 357 115 HOH HOH . 
D 4 HOH A 111 358 116 HOH HOH . 
D 4 HOH A 112 359 117 HOH HOH . 
D 4 HOH A 113 360 118 HOH HOH . 
D 4 HOH A 114 361 119 HOH HOH . 
D 4 HOH A 115 362 120 HOH HOH . 
D 4 HOH A 116 363 121 HOH HOH . 
D 4 HOH A 117 364 122 HOH HOH . 
D 4 HOH A 118 365 124 HOH HOH . 
D 4 HOH A 119 366 125 HOH HOH . 
D 4 HOH A 120 367 126 HOH HOH . 
D 4 HOH A 121 368 127 HOH HOH . 
D 4 HOH A 122 369 128 HOH HOH . 
D 4 HOH A 123 370 129 HOH HOH . 
D 4 HOH A 124 371 2 HOH HOH . 
D 4 HOH A 125 372 24 HOH HOH . 
D 4 HOH A 126 373 53 HOH HOH . 
D 4 HOH A 127 374 63 HOH HOH . 
D 4 HOH A 128 375 123 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N 0G6 . . . B 2 14.174 31.242 0.3 1 29.83 ? N 0G6 1 A 1 
HETATM 2 C CA 0G6 . . . B 2 13.419 29.981 0.607 1 30.19 ? CA 0G6 1 A 1 
HETATM 3 C C 0G6 . . . B 2 14.219 29.121 1.561 1 29.65 ? C 0G6 1 A 1 
HETATM 4 O O 0G6 . . . B 2 14.943 29.654 2.387 1 29.87 ? O 0G6 1 A 1 
HETATM 5 C CB 0G6 . . . B 2 12.068 30.282 1.28 1 30.21 ? CB 0G6 1 A 1 
HETATM 6 C CG 0G6 . . . B 2 11.192 31.236 0.52 1 32.55 ? CG 0G6 1 A 1 
HETATM 7 C CD1 0G6 . . . B 2 10.805 30.959 -0.801 1 34.51 ? CD1 0G6 1 A 1 
HETATM 8 C CD2 0G6 . . . B 2 10.742 32.411 1.127 1 33.8 ? CD2 0G6 1 A 1 
HETATM 9 C CE1 0G6 . . . B 2 9.989 31.834 -1.509 1 34.53 ? CE1 0G6 1 A 1 
HETATM 10 C CE2 0G6 . . . B 2 9.929 33.299 0.431 1 35.32 ? CE2 0G6 1 A 1 
HETATM 11 C CZ 0G6 . . . B 2 9.545 33.005 -0.891 1 36.5 ? CZ 0G6 1 A 1 
HETATM 12 N N1 0G6 . . . B 2 14.072 27.798 1.477 1 29.57 ? N1 0G6 1 A 1 
HETATM 13 C CA1 0G6 . . . B 2 14.635 26.904 2.496 1 29.36 ? CA1 0G6 1 A 1 
HETATM 14 C C1 0G6 . . . B 2 16.174 26.935 2.596 1 29.21 ? C1 0G6 1 A 1 
HETATM 15 O O1 0G6 . . . B 2 16.882 27.067 1.572 1 29.27 ? O1 0G6 1 A 1 
HETATM 16 C CB1 0G6 . . . B 2 14.127 25.513 2.071 1 29.37 ? CB1 0G6 1 A 1 
HETATM 17 C CG1 0G6 . . . B 2 13.836 25.638 0.619 1 30.21 ? CG1 0G6 1 A 1 
HETATM 18 C CD 0G6 . . . B 2 13.356 27.05 0.421 1 29.51 ? CD 0G6 1 A 1 
HETATM 19 N N2 0G6 . . . B 2 16.684 26.824 3.822 1 28.12 ? N2 0G6 1 A 1 
HETATM 20 C CA2 0G6 . . . B 2 18.128 26.7 4.036 1 27.44 ? CA2 0G6 1 A 1 
HETATM 21 C C2 0G6 . . . B 2 18.507 25.245 4.388 1 27.45 ? C2 0G6 1 A 1 
HETATM 22 O O2 0G6 . . . B 2 19.924 25.078 4.31 1 26.62 ? O2 0G6 1 A 1 
HETATM 23 C CB2 0G6 . . . B 2 18.63 27.726 5.052 1 27.15 ? CB2 0G6 1 A 1 
HETATM 24 C CG2 0G6 . . . B 2 18.379 29.147 4.538 1 27.08 ? CG2 0G6 1 A 1 
HETATM 25 C CD3 0G6 . . . B 2 18.258 30.174 5.67 1 26.32 ? CD3 0G6 1 A 1 
HETATM 26 N NE 0G6 . . . B 2 18.258 31.538 5.15 1 26.66 ? NE 0G6 1 A 1 
HETATM 27 C CZ1 0G6 . . . B 2 18.347 32.642 5.931 1 28.01 ? CZ1 0G6 1 A 1 
HETATM 28 N NH1 0G6 . . . B 2 18.28 33.797 5.394 1 27.02 ? NH1 0G6 1 A 1 
HETATM 29 N NH2 0G6 . . . B 2 18.516 32.551 7.266 1 25.71 ? NH2 0G6 1 A 1 
HETATM 30 C C3 0G6 . . . B 2 17.766 24.183 3.554 1 24.7 ? C3 0G6 1 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           294 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           30 
#