data_1ORH # _model_server_result.job_id lvYly7ysEBNIrJ4DPhYO9w _model_server_result.datetime_utc '2024-12-04 05:47:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1orh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":354}' # _entry.id 1ORH # _exptl.entry_id 1ORH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.411 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYL-L-HOMOCYSTEINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1ORH _cell.length_a 87.84 _cell.length_b 87.84 _cell.length_c 144.57 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1ORH _symmetry.cell_setting ? _symmetry.Int_Tables_number 91 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E 1 1 A,C,D,E 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_565 x,-y+1,-z+1/2 1 0 0 0 -1 0 0 0 -1 0 87.84 72.285 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C14 H20 N6 O5 S' _chem_comp.formula_weight 384.411 _chem_comp.id SAH _chem_comp.mon_nstd_flag n _chem_comp.name S-ADENOSYL-L-HOMOCYSTEINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAH sing 290 n n N HN1 SAH sing 291 n n N HN2 SAH sing 292 n n CA CB SAH sing 293 n n CA C SAH sing 294 n n CA HA SAH sing 295 n n CB CG SAH sing 296 n n CB HB1 SAH sing 297 n n CB HB2 SAH sing 298 n n CG SD SAH sing 299 n n CG HG1 SAH sing 300 n n CG HG2 SAH sing 301 n n SD C5' SAH sing 302 n n C O SAH doub 303 n n C OXT SAH sing 304 n n OXT HXT SAH sing 305 n n C5' C4' SAH sing 306 n n C5' "H5'1" SAH sing 307 n n C5' "H5'2" SAH sing 308 n n C4' O4' SAH sing 309 n n C4' C3' SAH sing 310 n n C4' H4' SAH sing 311 n n O4' C1' SAH sing 312 n n C3' O3' SAH sing 313 n n C3' C2' SAH sing 314 n n C3' H3' SAH sing 315 n n O3' HO3' SAH sing 316 n n C2' O2' SAH sing 317 n n C2' C1' SAH sing 318 n n C2' H2' SAH sing 319 n n O2' HO2' SAH sing 320 n n C1' N9 SAH sing 321 n n C1' H1' SAH sing 322 n n N9 C8 SAH sing 323 n y N9 C4 SAH sing 324 n y C8 N7 SAH doub 325 n y C8 H8 SAH sing 326 n n N7 C5 SAH sing 327 n y C5 C6 SAH sing 328 n y C5 C4 SAH doub 329 n y C6 N6 SAH sing 330 n n C6 N1 SAH doub 331 n y N6 HN61 SAH sing 332 n n N6 HN62 SAH sing 333 n n N1 C2 SAH sing 334 n y C2 N3 SAH doub 335 n y C2 H2 SAH sing 336 n n N3 C4 SAH sing 337 n y # _atom_sites.entry_id 1ORH _atom_sites.fract_transf_matrix[1][1] 0.011384 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011384 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006917 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 SAH A 1 354 354 SAH SAH . D 4 GOL A 1 600 600 GOL GCR . E 5 HOH A 1 355 355 HOH H2O . E 5 HOH A 2 356 356 HOH H2O . E 5 HOH A 3 357 357 HOH H2O . E 5 HOH A 4 358 358 HOH H2O . E 5 HOH A 5 359 359 HOH H2O . E 5 HOH A 6 361 361 HOH H2O . E 5 HOH A 7 362 362 HOH H2O . E 5 HOH A 8 363 363 HOH H2O . E 5 HOH A 9 364 364 HOH H2O . E 5 HOH A 10 365 365 HOH H2O . E 5 HOH A 11 366 366 HOH H2O . E 5 HOH A 12 367 367 HOH H2O . E 5 HOH A 13 368 368 HOH H2O . E 5 HOH A 14 373 373 HOH H2O . E 5 HOH A 15 374 374 HOH H2O . E 5 HOH A 16 375 375 HOH H2O . E 5 HOH A 17 376 376 HOH H2O . E 5 HOH A 18 377 377 HOH H2O . E 5 HOH A 19 378 378 HOH H2O . E 5 HOH A 20 379 379 HOH H2O . E 5 HOH A 21 380 380 HOH H2O . E 5 HOH A 22 381 381 HOH H2O . E 5 HOH A 23 382 382 HOH H2O . E 5 HOH A 24 383 383 HOH H2O . E 5 HOH A 25 384 384 HOH H2O . E 5 HOH A 26 386 386 HOH H2O . E 5 HOH A 27 388 388 HOH H2O . E 5 HOH A 28 389 389 HOH H2O . E 5 HOH A 29 390 390 HOH H2O . E 5 HOH A 30 391 391 HOH H2O . E 5 HOH A 31 392 392 HOH H2O . E 5 HOH A 32 393 393 HOH H2O . E 5 HOH A 33 394 394 HOH H2O . E 5 HOH A 34 398 398 HOH H2O . E 5 HOH A 35 399 399 HOH H2O . E 5 HOH A 36 400 400 HOH H2O . E 5 HOH A 37 401 401 HOH H2O . E 5 HOH A 38 402 402 HOH H2O . E 5 HOH A 39 403 403 HOH H2O . E 5 HOH A 40 405 405 HOH H2O . E 5 HOH A 41 407 407 HOH H2O . E 5 HOH A 42 409 409 HOH H2O . E 5 HOH A 43 410 410 HOH H2O . E 5 HOH A 44 411 411 HOH H2O . E 5 HOH A 45 412 412 HOH H2O . E 5 HOH A 46 413 413 HOH H2O . E 5 HOH A 47 415 415 HOH H2O . E 5 HOH A 48 416 416 HOH H2O . E 5 HOH A 49 417 417 HOH H2O . E 5 HOH A 50 418 418 HOH H2O . E 5 HOH A 51 419 419 HOH H2O . E 5 HOH A 52 420 420 HOH H2O . E 5 HOH A 53 421 421 HOH H2O . E 5 HOH A 54 422 422 HOH H2O . E 5 HOH A 55 423 423 HOH H2O . E 5 HOH A 56 424 424 HOH H2O . E 5 HOH A 57 425 425 HOH H2O . E 5 HOH A 58 426 426 HOH H2O . E 5 HOH A 59 428 428 HOH H2O . E 5 HOH A 60 432 432 HOH H2O . E 5 HOH A 61 433 433 HOH H2O . E 5 HOH A 62 434 434 HOH H2O . E 5 HOH A 63 435 435 HOH H2O . E 5 HOH A 64 436 436 HOH H2O . E 5 HOH A 65 437 437 HOH H2O . E 5 HOH A 66 438 438 HOH H2O . E 5 HOH A 67 439 439 HOH H2O . E 5 HOH A 68 440 440 HOH H2O . E 5 HOH A 69 442 442 HOH H2O . E 5 HOH A 70 443 443 HOH H2O . E 5 HOH A 71 444 444 HOH H2O . E 5 HOH A 72 445 445 HOH H2O . E 5 HOH A 73 446 446 HOH H2O . E 5 HOH A 74 447 447 HOH H2O . E 5 HOH A 75 448 448 HOH H2O . E 5 HOH A 76 449 449 HOH H2O . E 5 HOH A 77 452 452 HOH H2O . E 5 HOH A 78 453 453 HOH H2O . E 5 HOH A 79 454 454 HOH H2O . E 5 HOH A 80 455 455 HOH H2O . E 5 HOH A 81 456 456 HOH H2O . E 5 HOH A 82 457 457 HOH H2O . E 5 HOH A 83 458 458 HOH H2O . E 5 HOH A 84 459 459 HOH H2O . E 5 HOH A 85 460 460 HOH H2O . E 5 HOH A 86 461 461 HOH H2O . E 5 HOH A 87 462 462 HOH H2O . E 5 HOH A 88 463 463 HOH H2O . E 5 HOH A 89 464 464 HOH H2O . E 5 HOH A 90 465 465 HOH H2O . E 5 HOH A 91 466 466 HOH H2O . E 5 HOH A 92 472 472 HOH H2O . E 5 HOH A 93 473 473 HOH H2O . E 5 HOH A 94 474 474 HOH H2O . E 5 HOH A 95 477 477 HOH H2O . E 5 HOH A 96 478 478 HOH H2O . E 5 HOH A 97 479 479 HOH H2O . E 5 HOH A 98 480 480 HOH H2O . E 5 HOH A 99 481 481 HOH H2O . E 5 HOH A 100 482 482 HOH H2O . E 5 HOH A 101 485 485 HOH H2O . E 5 HOH A 102 486 486 HOH H2O . E 5 HOH A 103 499 499 HOH H2O . E 5 HOH A 104 501 501 HOH H2O . E 5 HOH A 105 502 502 HOH H2O . E 5 HOH A 106 504 504 HOH H2O . E 5 HOH A 107 506 506 HOH H2O . E 5 HOH A 108 508 508 HOH H2O . E 5 HOH A 109 510 510 HOH H2O . E 5 HOH A 110 511 511 HOH H2O . E 5 HOH A 111 512 512 HOH H2O . E 5 HOH A 112 514 514 HOH H2O . E 5 HOH A 113 515 515 HOH H2O . E 5 HOH A 114 517 517 HOH H2O . E 5 HOH A 115 519 519 HOH H2O . E 5 HOH A 116 520 520 HOH H2O . E 5 HOH A 117 524 524 HOH H2O . E 5 HOH A 118 525 525 HOH H2O . E 5 HOH A 119 526 526 HOH H2O . E 5 HOH A 120 528 528 HOH H2O . E 5 HOH A 121 529 529 HOH H2O . E 5 HOH A 122 530 530 HOH H2O . E 5 HOH A 123 531 531 HOH H2O . E 5 HOH A 124 533 533 HOH H2O . E 5 HOH A 125 534 534 HOH H2O . E 5 HOH A 126 537 537 HOH H2O . E 5 HOH A 127 538 538 HOH H2O . E 5 HOH A 128 539 539 HOH H2O . E 5 HOH A 129 540 540 HOH H2O . E 5 HOH A 130 541 541 HOH H2O . E 5 HOH A 131 543 543 HOH H2O . E 5 HOH A 132 546 546 HOH H2O . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAH . . . C 3 8.094 24.49 29.623 1 34.19 ? N SAH 354 A 1 HETATM 2 C CA SAH . . . C 3 7.381 25.029 30.775 1 36.05 ? CA SAH 354 A 1 HETATM 3 C CB SAH . . . C 3 7.849 26.451 31.099 1 32.24 ? CB SAH 354 A 1 HETATM 4 C CG SAH . . . C 3 8.055 27.337 29.882 1 33.64 ? CG SAH 354 A 1 HETATM 5 S SD SAH . . . C 3 8.439 29.082 30.269 1 37.46 ? SD SAH 354 A 1 HETATM 6 C C SAH . . . C 3 5.886 25.048 30.505 1 36.77 ? C SAH 354 A 1 HETATM 7 O O SAH . . . C 3 5.489 25.059 29.259 1 34.72 ? O SAH 354 A 1 HETATM 8 O OXT SAH . . . C 3 5.119 25.35 31.521 1 37.71 ? OXT SAH 354 A 1 HETATM 9 C C5' SAH . . . C 3 10.176 29.337 29.761 1 33.18 ? C5' SAH 354 A 1 HETATM 10 C C4' SAH . . . C 3 11.154 28.58 30.631 1 35.93 ? C4' SAH 354 A 1 HETATM 11 O O4' SAH . . . C 3 12.412 28.413 29.917 1 38.4 ? O4' SAH 354 A 1 HETATM 12 C C3' SAH . . . C 3 11.506 29.224 31.975 1 34.64 ? C3' SAH 354 A 1 HETATM 13 O O3' SAH . . . C 3 11.543 28.236 33.001 1 35.34 ? O3' SAH 354 A 1 HETATM 14 C C2' SAH . . . C 3 12.893 29.815 31.716 1 32.52 ? C2' SAH 354 A 1 HETATM 15 O O2' SAH . . . C 3 13.695 29.922 32.872 1 39.94 ? O2' SAH 354 A 1 HETATM 16 C C1' SAH . . . C 3 13.485 28.79 30.755 1 35.86 ? C1' SAH 354 A 1 HETATM 17 N N9 SAH . . . C 3 14.589 29.279 29.926 1 39.43 ? N9 SAH 354 A 1 HETATM 18 C C8 SAH . . . C 3 14.679 30.457 29.225 1 39.82 ? C8 SAH 354 A 1 HETATM 19 N N7 SAH . . . C 3 15.808 30.602 28.572 1 40.18 ? N7 SAH 354 A 1 HETATM 20 C C5 SAH . . . C 3 16.513 29.441 28.863 1 39.99 ? C5 SAH 354 A 1 HETATM 21 C C6 SAH . . . C 3 17.796 28.983 28.478 1 40.1 ? C6 SAH 354 A 1 HETATM 22 N N6 SAH . . . C 3 18.624 29.667 27.686 1 35.35 ? N6 SAH 354 A 1 HETATM 23 N N1 SAH . . . C 3 18.199 27.782 28.947 1 40.64 ? N1 SAH 354 A 1 HETATM 24 C C2 SAH . . . C 3 17.373 27.096 29.745 1 42.1 ? C2 SAH 354 A 1 HETATM 25 N N3 SAH . . . C 3 16.153 27.418 30.175 1 43.97 ? N3 SAH 354 A 1 HETATM 26 C C4 SAH . . . C 3 15.777 28.616 29.693 1 40.99 ? C4 SAH 354 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 26 #