data_1ORH # _model_server_result.job_id qM-LN249KOuFWrrC0k8svw _model_server_result.datetime_utc '2024-12-04 06:12:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1orh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":600}' # _entry.id 1ORH # _exptl.entry_id 1ORH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1ORH _cell.length_a 87.84 _cell.length_b 87.84 _cell.length_c 144.57 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1ORH _symmetry.cell_setting ? _symmetry.Int_Tables_number 91 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E 1 1 A,C,D,E 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_565 x,-y+1,-z+1/2 1 0 0 0 -1 0 0 0 -1 0 87.84 72.285 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 1ORH _atom_sites.fract_transf_matrix[1][1] 0.011384 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011384 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006917 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 SAH A 1 354 354 SAH SAH . D 4 GOL A 1 600 600 GOL GCR . E 5 HOH A 1 355 355 HOH H2O . E 5 HOH A 2 356 356 HOH H2O . E 5 HOH A 3 357 357 HOH H2O . E 5 HOH A 4 358 358 HOH H2O . E 5 HOH A 5 359 359 HOH H2O . E 5 HOH A 6 361 361 HOH H2O . E 5 HOH A 7 362 362 HOH H2O . E 5 HOH A 8 363 363 HOH H2O . E 5 HOH A 9 364 364 HOH H2O . E 5 HOH A 10 365 365 HOH H2O . E 5 HOH A 11 366 366 HOH H2O . E 5 HOH A 12 367 367 HOH H2O . E 5 HOH A 13 368 368 HOH H2O . E 5 HOH A 14 373 373 HOH H2O . E 5 HOH A 15 374 374 HOH H2O . E 5 HOH A 16 375 375 HOH H2O . E 5 HOH A 17 376 376 HOH H2O . E 5 HOH A 18 377 377 HOH H2O . E 5 HOH A 19 378 378 HOH H2O . E 5 HOH A 20 379 379 HOH H2O . E 5 HOH A 21 380 380 HOH H2O . E 5 HOH A 22 381 381 HOH H2O . E 5 HOH A 23 382 382 HOH H2O . E 5 HOH A 24 383 383 HOH H2O . E 5 HOH A 25 384 384 HOH H2O . E 5 HOH A 26 386 386 HOH H2O . E 5 HOH A 27 388 388 HOH H2O . E 5 HOH A 28 389 389 HOH H2O . E 5 HOH A 29 390 390 HOH H2O . E 5 HOH A 30 391 391 HOH H2O . E 5 HOH A 31 392 392 HOH H2O . E 5 HOH A 32 393 393 HOH H2O . E 5 HOH A 33 394 394 HOH H2O . E 5 HOH A 34 398 398 HOH H2O . E 5 HOH A 35 399 399 HOH H2O . E 5 HOH A 36 400 400 HOH H2O . E 5 HOH A 37 401 401 HOH H2O . E 5 HOH A 38 402 402 HOH H2O . E 5 HOH A 39 403 403 HOH H2O . E 5 HOH A 40 405 405 HOH H2O . E 5 HOH A 41 407 407 HOH H2O . E 5 HOH A 42 409 409 HOH H2O . E 5 HOH A 43 410 410 HOH H2O . E 5 HOH A 44 411 411 HOH H2O . E 5 HOH A 45 412 412 HOH H2O . E 5 HOH A 46 413 413 HOH H2O . E 5 HOH A 47 415 415 HOH H2O . E 5 HOH A 48 416 416 HOH H2O . E 5 HOH A 49 417 417 HOH H2O . E 5 HOH A 50 418 418 HOH H2O . E 5 HOH A 51 419 419 HOH H2O . E 5 HOH A 52 420 420 HOH H2O . E 5 HOH A 53 421 421 HOH H2O . E 5 HOH A 54 422 422 HOH H2O . E 5 HOH A 55 423 423 HOH H2O . E 5 HOH A 56 424 424 HOH H2O . E 5 HOH A 57 425 425 HOH H2O . E 5 HOH A 58 426 426 HOH H2O . E 5 HOH A 59 428 428 HOH H2O . E 5 HOH A 60 432 432 HOH H2O . E 5 HOH A 61 433 433 HOH H2O . E 5 HOH A 62 434 434 HOH H2O . E 5 HOH A 63 435 435 HOH H2O . E 5 HOH A 64 436 436 HOH H2O . E 5 HOH A 65 437 437 HOH H2O . E 5 HOH A 66 438 438 HOH H2O . E 5 HOH A 67 439 439 HOH H2O . E 5 HOH A 68 440 440 HOH H2O . E 5 HOH A 69 442 442 HOH H2O . E 5 HOH A 70 443 443 HOH H2O . E 5 HOH A 71 444 444 HOH H2O . E 5 HOH A 72 445 445 HOH H2O . E 5 HOH A 73 446 446 HOH H2O . E 5 HOH A 74 447 447 HOH H2O . E 5 HOH A 75 448 448 HOH H2O . E 5 HOH A 76 449 449 HOH H2O . E 5 HOH A 77 452 452 HOH H2O . E 5 HOH A 78 453 453 HOH H2O . E 5 HOH A 79 454 454 HOH H2O . E 5 HOH A 80 455 455 HOH H2O . E 5 HOH A 81 456 456 HOH H2O . E 5 HOH A 82 457 457 HOH H2O . E 5 HOH A 83 458 458 HOH H2O . E 5 HOH A 84 459 459 HOH H2O . E 5 HOH A 85 460 460 HOH H2O . E 5 HOH A 86 461 461 HOH H2O . E 5 HOH A 87 462 462 HOH H2O . E 5 HOH A 88 463 463 HOH H2O . E 5 HOH A 89 464 464 HOH H2O . E 5 HOH A 90 465 465 HOH H2O . E 5 HOH A 91 466 466 HOH H2O . E 5 HOH A 92 472 472 HOH H2O . E 5 HOH A 93 473 473 HOH H2O . E 5 HOH A 94 474 474 HOH H2O . E 5 HOH A 95 477 477 HOH H2O . E 5 HOH A 96 478 478 HOH H2O . E 5 HOH A 97 479 479 HOH H2O . E 5 HOH A 98 480 480 HOH H2O . E 5 HOH A 99 481 481 HOH H2O . E 5 HOH A 100 482 482 HOH H2O . E 5 HOH A 101 485 485 HOH H2O . E 5 HOH A 102 486 486 HOH H2O . E 5 HOH A 103 499 499 HOH H2O . E 5 HOH A 104 501 501 HOH H2O . E 5 HOH A 105 502 502 HOH H2O . E 5 HOH A 106 504 504 HOH H2O . E 5 HOH A 107 506 506 HOH H2O . E 5 HOH A 108 508 508 HOH H2O . E 5 HOH A 109 510 510 HOH H2O . E 5 HOH A 110 511 511 HOH H2O . E 5 HOH A 111 512 512 HOH H2O . E 5 HOH A 112 514 514 HOH H2O . E 5 HOH A 113 515 515 HOH H2O . E 5 HOH A 114 517 517 HOH H2O . E 5 HOH A 115 519 519 HOH H2O . E 5 HOH A 116 520 520 HOH H2O . E 5 HOH A 117 524 524 HOH H2O . E 5 HOH A 118 525 525 HOH H2O . E 5 HOH A 119 526 526 HOH H2O . E 5 HOH A 120 528 528 HOH H2O . E 5 HOH A 121 529 529 HOH H2O . E 5 HOH A 122 530 530 HOH H2O . E 5 HOH A 123 531 531 HOH H2O . E 5 HOH A 124 533 533 HOH H2O . E 5 HOH A 125 534 534 HOH H2O . E 5 HOH A 126 537 537 HOH H2O . E 5 HOH A 127 538 538 HOH H2O . E 5 HOH A 128 539 539 HOH H2O . E 5 HOH A 129 540 540 HOH H2O . E 5 HOH A 130 541 541 HOH H2O . E 5 HOH A 131 543 543 HOH H2O . E 5 HOH A 132 546 546 HOH H2O . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 4 -6.584 54.154 -2.937 1 48.9 ? C1 GOL 600 A 1 HETATM 2 O O1 GOL . . . D 4 -5.321 53.558 -2.691 1 39.89 ? O1 GOL 600 A 1 HETATM 3 C C2 GOL . . . D 4 -7.712 53.344 -2.28 1 49.86 ? C2 GOL 600 A 1 HETATM 4 O O2 GOL . . . D 4 -8.939 54.09 -2.249 1 49.53 ? O2 GOL 600 A 1 HETATM 5 C C3 GOL . . . D 4 -7.317 52.922 -0.866 1 53.15 ? C3 GOL 600 A 1 HETATM 6 O O3 GOL . . . D 4 -6.994 54.048 -0.064 1 52.39 ? O3 GOL 600 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 6 #