data_1ORK # _model_server_result.job_id 39CNRkpxIn0H7Aw0C1VSMg _model_server_result.datetime_utc '2024-12-16 11:31:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ork # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":222}' # _entry.id 1ORK # _exptl.entry_id 1ORK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 514.528 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 9-(N,N-DIMETHYLGLYCYLAMIDO)-6-DEOXY-6-DEMETHYL-TETRACYCLINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1ORK _cell.length_a 68.94 _cell.length_b 68.94 _cell.length_c 180.75 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1ORK _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 41 2 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 68.94 68.94 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 99 A HIS 100 1_555 B MG MG . A MG 223 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.944 ? metalc ? metalc2 C O11 ATC . A ATC 222 1_555 B MG MG . A MG 223 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.201 ? metalc ? metalc3 C O12 ATC . A ATC 222 1_555 B MG MG . A MG 223 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? metalc ? metalc4 B MG MG . A MG 223 1_555 D O HOH . A HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.738 ? metalc ? metalc5 B MG MG . A MG 223 1_555 D O HOH . A HOH 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.772 ? metalc ? metalc6 B MG MG . A MG 223 1_555 D O HOH . A HOH 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.753 ? # _chem_comp.formula 'C25 H30 N4 O8' _chem_comp.formula_weight 514.528 _chem_comp.id ATC _chem_comp.mon_nstd_flag . _chem_comp.name 9-(N,N-DIMETHYLGLYCYLAMIDO)-6-DEOXY-6-DEMETHYL-TETRACYCLINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 ATC doub 70 n n C1 C2 ATC sing 71 n n C1 C1C ATC sing 72 n n C2 C21 ATC sing 73 n n C2 C3 ATC doub 74 n n C21 O21 ATC doub 75 n n C21 N21 ATC sing 76 n n N21 HN21 ATC sing 77 n n N21 HN22 ATC sing 78 n n C3 O3 ATC sing 79 n n C3 C4 ATC sing 80 n n O3 HO3 ATC sing 81 n n C4 N4 ATC sing 82 n n C4 C41 ATC sing 83 n n C4 H4 ATC sing 84 n n N4 C42 ATC sing 85 n n N4 C43 ATC sing 86 n n C42 H421 ATC sing 87 n n C42 H422 ATC sing 88 n n C42 H423 ATC sing 89 n n C43 H431 ATC sing 90 n n C43 H432 ATC sing 91 n n C43 H433 ATC sing 92 n n C41 C5 ATC sing 93 n n C41 C1C ATC sing 94 n n C41 H41 ATC sing 95 n n C5 C51 ATC sing 96 n n C5 H51A ATC sing 97 n n C5 H52 ATC sing 98 n n C51 C6 ATC sing 99 n n C51 C1B ATC sing 100 n n C51 H51 ATC sing 101 n n C6 C61 ATC sing 102 n n C6 H61 ATC sing 103 n n C6 H62 ATC sing 104 n n C61 C7 ATC doub 105 n y C61 C1A ATC sing 106 n y C7 C8 ATC sing 107 n y C7 H7 ATC sing 108 n n C8 C9 ATC doub 109 n y C8 H8 ATC sing 110 n n C9 C10 ATC sing 111 n y C9 N9 ATC sing 112 n n C10 O10 ATC sing 113 n n C10 C1A ATC doub 114 n y O10 H10 ATC sing 115 n n C1A C11 ATC sing 116 n n C11 O11 ATC doub 117 n n C11 C1B ATC sing 118 n n C1B C12 ATC doub 119 n n C12 O12 ATC sing 120 n n C12 C1C ATC sing 121 n n O12 HO2 ATC sing 122 n n C1C O1C ATC sing 123 n n O1C HOC1 ATC sing 124 n n N9 C91 ATC sing 125 n n N9 HN9 ATC sing 126 n n C91 O91 ATC doub 127 n n C91 C92 ATC sing 128 n n C92 N92 ATC sing 129 n n C92 H921 ATC sing 130 n n C92 H922 ATC sing 131 n n N92 C93 ATC sing 132 n n N92 C94 ATC sing 133 n n C93 H931 ATC sing 134 n n C93 H932 ATC sing 135 n n C93 H933 ATC sing 136 n n C94 H941 ATC sing 137 n n C94 H942 ATC sing 138 n n C94 H943 ATC sing 139 n n # _atom_sites.entry_id 1ORK _atom_sites.fract_transf_matrix[1][1] 0.014505 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014505 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005533 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 223 223 MG MG . C 3 ATC A 1 222 222 ATC ATC . D 4 HOH A 1 301 301 HOH HOH . D 4 HOH A 2 302 302 HOH HOH . D 4 HOH A 3 303 303 HOH HOH . D 4 HOH A 4 304 304 HOH HOH . D 4 HOH A 5 305 305 HOH HOH . D 4 HOH A 6 306 306 HOH HOH . D 4 HOH A 7 307 307 HOH HOH . D 4 HOH A 8 308 308 HOH HOH . D 4 HOH A 9 309 309 HOH HOH . D 4 HOH A 10 310 310 HOH HOH . D 4 HOH A 11 311 311 HOH HOH . D 4 HOH A 12 312 312 HOH HOH . D 4 HOH A 13 313 313 HOH HOH . D 4 HOH A 14 314 314 HOH HOH . D 4 HOH A 15 315 315 HOH HOH . D 4 HOH A 16 316 316 HOH HOH . D 4 HOH A 17 317 317 HOH HOH . D 4 HOH A 18 318 318 HOH HOH . D 4 HOH A 19 319 319 HOH HOH . D 4 HOH A 20 320 320 HOH HOH . D 4 HOH A 21 321 321 HOH HOH . D 4 HOH A 22 322 322 HOH HOH . D 4 HOH A 23 323 323 HOH HOH . D 4 HOH A 24 324 324 HOH HOH . D 4 HOH A 25 325 325 HOH HOH . D 4 HOH A 26 326 326 HOH HOH . D 4 HOH A 27 327 327 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 ATC . . . C 3 20.108 34.617 34.391 1 38.44 ? C1 ATC 222 A 1 HETATM 2 O O1 ATC . . . C 3 19.565 35.079 33.352 1 39.65 ? O1 ATC 222 A 1 HETATM 3 C C2 ATC . . . C 3 19.58 33.569 35.143 1 37.69 ? C2 ATC 222 A 1 HETATM 4 C C21 ATC . . . C 3 18.389 32.921 34.789 1 38.2 ? C21 ATC 222 A 1 HETATM 5 O O21 ATC . . . C 3 17.977 31.931 35.443 1 39.66 ? O21 ATC 222 A 1 HETATM 6 N N21 ATC . . . C 3 17.622 33.286 33.712 1 38.94 ? N21 ATC 222 A 1 HETATM 7 C C3 ATC . . . C 3 20.303 33.233 36.28 1 35.4 ? C3 ATC 222 A 1 HETATM 8 O O3 ATC . . . C 3 20.197 31.968 36.868 1 34.17 ? O3 ATC 222 A 1 HETATM 9 C C4 ATC . . . C 3 21.146 34.254 37.037 1 35.42 ? C4 ATC 222 A 1 HETATM 10 N N4 ATC . . . C 3 22.203 33.436 37.814 1 33.47 ? N4 ATC 222 A 1 HETATM 11 C C42 ATC . . . C 3 23.025 34.364 38.775 1 33.49 ? C42 ATC 222 A 1 HETATM 12 C C43 ATC . . . C 3 23.101 32.531 36.933 1 32.16 ? C43 ATC 222 A 1 HETATM 13 C C41 ATC . . . C 3 21.755 35.348 36.109 1 37.32 ? C41 ATC 222 A 1 HETATM 14 C C5 ATC . . . C 3 21.097 36.688 36.331 1 37.27 ? C5 ATC 222 A 1 HETATM 15 C C51 ATC . . . C 3 21.749 37.856 35.634 1 40.94 ? C51 ATC 222 A 1 HETATM 16 C C6 ATC . . . C 3 20.941 39.171 35.627 1 42.97 ? C6 ATC 222 A 1 HETATM 17 C C61 ATC . . . C 3 21.678 40.267 34.817 1 44.64 ? C61 ATC 222 A 1 HETATM 18 C C7 ATC . . . C 3 21.512 41.59 35.221 1 44.48 ? C7 ATC 222 A 1 HETATM 19 C C8 ATC . . . C 3 22.104 42.615 34.48 1 47.77 ? C8 ATC 222 A 1 HETATM 20 C C9 ATC . . . C 3 22.861 42.336 33.331 1 48.83 ? C9 ATC 222 A 1 HETATM 21 C C10 ATC . . . C 3 23.037 40.994 32.934 1 45.96 ? C10 ATC 222 A 1 HETATM 22 O O10 ATC . . . C 3 23.836 40.711 31.795 1 46.27 ? O10 ATC 222 A 1 HETATM 23 C C1A ATC . . . C 3 22.449 39.941 33.678 1 44.34 ? C1A ATC 222 A 1 HETATM 24 C C11 ATC . . . C 3 22.521 38.598 33.282 1 42.76 ? C11 ATC 222 A 1 HETATM 25 O O11 ATC . . . C 3 23.076 38.346 32.217 1 42.91 ? O11 ATC 222 A 1 HETATM 26 C C1B ATC . . . C 3 22.102 37.526 34.129 1 41.46 ? C1B ATC 222 A 1 HETATM 27 C C12 ATC . . . C 3 22.063 36.176 33.735 1 39.8 ? C12 ATC 222 A 1 HETATM 28 O O12 ATC . . . C 3 22.561 35.738 32.442 1 38.22 ? O12 ATC 222 A 1 HETATM 29 C C1C ATC . . . C 3 21.583 35.013 34.622 1 38.12 ? C1C ATC 222 A 1 HETATM 30 O O1C ATC . . . C 3 22.438 33.904 34.33 1 34.66 ? O1C ATC 222 A 1 HETATM 31 N N9 ATC . . . C 3 23.335 43.388 32.586 1 52.13 ? N9 ATC 222 A 1 HETATM 32 C C91 ATC . . . C 3 24.598 43.815 32.606 1 55.35 ? C91 ATC 222 A 1 HETATM 33 O O91 ATC . . . C 3 25.35 43.561 33.556 1 57.87 ? O91 ATC 222 A 1 HETATM 34 C C92 ATC . . . C 3 25.229 44.6 31.463 1 56.68 ? C92 ATC 222 A 1 HETATM 35 N N92 ATC . . . C 3 26.669 43.997 31.113 1 60.01 ? N92 ATC 222 A 1 HETATM 36 C C93 ATC . . . C 3 27.847 44.391 32.123 1 58.69 ? C93 ATC 222 A 1 HETATM 37 C C94 ATC . . . C 3 26.583 42.447 30.737 1 57.78 ? C94 ATC 222 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 333 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 37 #