data_1ORN # _model_server_result.job_id AEkr-L0cT-dnlJbWtcW3yw _model_server_result.datetime_utc '2025-03-06 06:18:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1orn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":224}' # _entry.id 1ORN # _exptl.entry_id 1ORN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1ORN _cell.length_a 67.826 _cell.length_b 106.828 _cell.length_c 41.708 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1ORN _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B O3' DA 6 C DA 17 1_555 B P PED 7 C PED 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.6 ? covale ? covale2 B O3' PED 7 C PED 18 1_555 B P DG 8 C DG 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.598 ? covale ? covale3 B C1' PED 7 C PED 18 1_555 C NZ LYS 124 A LYS 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.47 ? metalc ? metalc1 B OP1 DC 10 C DC 21 1_555 E NA NA . A NA 224 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.565 ? metalc ? metalc2 H O HOH . C HOH 210 1_555 E NA NA . A NA 224 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.573 ? metalc ? metalc3 C O MET 116 A MET 113 1_555 E NA NA . A NA 224 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? metalc ? metalc4 C O LEU 118 A LEU 115 1_555 E NA NA . A NA 224 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.393 ? metalc ? metalc5 C O VAL 121 A VAL 118 1_555 E NA NA . A NA 224 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.468 ? metalc ? metalc6 C SG CYS 192 A CYS 189 1_555 F FE2 SF4 . A SF4 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.393 ? metalc ? metalc7 C SG CYS 199 A CYS 196 1_555 F FE3 SF4 . A SF4 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.548 ? metalc ? metalc8 C SG CYS 202 A CYS 199 1_555 F FE1 SF4 . A SF4 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? metalc ? metalc9 C SG CYS 208 A CYS 205 1_555 F FE4 SF4 . A SF4 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.449 ? metalc ? metalc10 E NA NA . A NA 224 1_555 I O HOH . A HOH 345 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? hydrog WATSON-CRICK hydrog1 A N1 DA 2 B DA 2 1_555 B N3 DT 11 C DT 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N6 DA 2 B DA 2 1_555 B O4 DT 11 C DT 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A N1 DG 3 B DG 3 1_555 B N3 DC 10 C DC 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N2 DG 3 B DG 3 1_555 B O2 DC 10 C DC 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A O6 DG 3 B DG 3 1_555 B N4 DC 10 C DC 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A N1 DA 4 B DA 4 1_555 B N3 DT 9 C DT 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N6 DA 4 B DA 4 1_555 B O4 DT 9 C DT 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A N3 DC 5 B DC 5 1_555 B N1 DG 8 C DG 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A N4 DC 5 B DC 5 1_555 B O6 DG 8 C DG 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A O2 DC 5 B DC 5 1_555 B N2 DG 8 C DG 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A N3 DT 7 B DT 7 1_555 B N1 DA 6 C DA 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A O4 DT 7 B DT 7 1_555 B N6 DA 6 C DA 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A N1 DG 8 B DG 8 1_555 B N3 DC 5 C DC 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A N2 DG 8 B DG 8 1_555 B O2 DC 5 C DC 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A O6 DG 8 B DG 8 1_555 B N4 DC 5 C DC 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A N1 DG 9 B DG 9 1_555 B N3 DC 4 C DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A N2 DG 9 B DG 9 1_555 B O2 DC 4 C DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 A O6 DG 9 B DG 9 1_555 B N4 DC 4 C DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 A N1 DA 10 B DA 10 1_555 B N3 DT 3 C DT 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 A N6 DA 10 B DA 10 1_555 B O4 DT 3 C DT 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 A N3 DC 11 B DC 11 1_555 B N1 DG 2 C DG 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 A N4 DC 11 B DC 11 1_555 B O6 DG 2 C DG 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 A O2 DC 11 B DC 11 1_555 B N2 DG 2 C DG 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1ORN _atom_sites.fract_transf_matrix[1][1] 0.014744 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009361 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.023976 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 TRS C 1 200 200 TRS TRS . E 5 NA A 1 224 201 NA NA . F 6 SF4 A 1 300 300 SF4 FS4 . G 7 HOH B 1 90 90 HOH HOH . G 7 HOH B 2 95 95 HOH HOH . G 7 HOH B 3 96 96 HOH HOH . G 7 HOH B 4 109 109 HOH HOH . H 7 HOH C 1 201 7 HOH HOH . H 7 HOH C 2 202 8 HOH HOH . H 7 HOH C 3 203 12 HOH HOH . H 7 HOH C 4 204 18 HOH HOH . H 7 HOH C 5 205 22 HOH HOH . H 7 HOH C 6 206 23 HOH HOH . H 7 HOH C 7 207 24 HOH HOH . H 7 HOH C 8 208 27 HOH HOH . H 7 HOH C 9 209 34 HOH HOH . H 7 HOH C 10 210 42 HOH HOH . H 7 HOH C 11 211 44 HOH HOH . H 7 HOH C 12 212 45 HOH HOH . H 7 HOH C 13 213 54 HOH HOH . H 7 HOH C 14 214 55 HOH HOH . H 7 HOH C 15 215 89 HOH HOH . H 7 HOH C 16 216 97 HOH HOH . H 7 HOH C 17 217 106 HOH HOH . H 7 HOH C 18 218 107 HOH HOH . H 7 HOH C 19 219 116 HOH HOH . I 7 HOH A 1 301 2 HOH HOH . I 7 HOH A 2 302 3 HOH HOH . I 7 HOH A 3 303 4 HOH HOH . I 7 HOH A 4 304 5 HOH HOH . I 7 HOH A 5 305 6 HOH HOH . I 7 HOH A 6 306 9 HOH HOH . I 7 HOH A 7 307 10 HOH HOH . I 7 HOH A 8 308 11 HOH HOH . I 7 HOH A 9 309 13 HOH HOH . I 7 HOH A 10 310 14 HOH HOH . I 7 HOH A 11 311 15 HOH HOH . I 7 HOH A 12 312 16 HOH HOH . I 7 HOH A 13 313 17 HOH HOH . I 7 HOH A 14 314 19 HOH HOH . I 7 HOH A 15 315 20 HOH HOH . I 7 HOH A 16 316 21 HOH HOH . I 7 HOH A 17 317 25 HOH HOH . I 7 HOH A 18 318 26 HOH HOH . I 7 HOH A 19 319 28 HOH HOH . I 7 HOH A 20 320 29 HOH HOH . I 7 HOH A 21 321 30 HOH HOH . I 7 HOH A 22 322 31 HOH HOH . I 7 HOH A 23 323 32 HOH HOH . I 7 HOH A 24 324 33 HOH HOH . I 7 HOH A 25 325 35 HOH HOH . I 7 HOH A 26 326 36 HOH HOH . I 7 HOH A 27 327 37 HOH HOH . I 7 HOH A 28 328 38 HOH HOH . I 7 HOH A 29 329 39 HOH HOH . I 7 HOH A 30 330 40 HOH HOH . I 7 HOH A 31 331 43 HOH HOH . I 7 HOH A 32 332 46 HOH HOH . I 7 HOH A 33 333 47 HOH HOH . I 7 HOH A 34 334 48 HOH HOH . I 7 HOH A 35 335 49 HOH HOH . I 7 HOH A 36 336 50 HOH HOH . I 7 HOH A 37 337 51 HOH HOH . I 7 HOH A 38 338 53 HOH HOH . I 7 HOH A 39 339 56 HOH HOH . I 7 HOH A 40 340 57 HOH HOH . I 7 HOH A 41 341 58 HOH HOH . I 7 HOH A 42 342 59 HOH HOH . I 7 HOH A 43 343 61 HOH HOH . I 7 HOH A 44 344 62 HOH HOH . I 7 HOH A 45 345 63 HOH HOH . I 7 HOH A 46 346 64 HOH HOH . I 7 HOH A 47 347 65 HOH HOH . I 7 HOH A 48 348 66 HOH HOH . I 7 HOH A 49 349 67 HOH HOH . I 7 HOH A 50 350 69 HOH HOH . I 7 HOH A 51 351 70 HOH HOH . I 7 HOH A 52 352 71 HOH HOH . I 7 HOH A 53 353 72 HOH HOH . I 7 HOH A 54 354 73 HOH HOH . I 7 HOH A 55 355 74 HOH HOH . I 7 HOH A 56 356 75 HOH HOH . I 7 HOH A 57 357 76 HOH HOH . I 7 HOH A 58 358 78 HOH HOH . I 7 HOH A 59 359 80 HOH HOH . I 7 HOH A 60 360 81 HOH HOH . I 7 HOH A 61 361 83 HOH HOH . I 7 HOH A 62 362 84 HOH HOH . I 7 HOH A 63 363 85 HOH HOH . I 7 HOH A 64 364 88 HOH HOH . I 7 HOH A 65 365 91 HOH HOH . I 7 HOH A 66 366 93 HOH HOH . I 7 HOH A 67 367 94 HOH HOH . I 7 HOH A 68 368 98 HOH HOH . I 7 HOH A 69 369 99 HOH HOH . I 7 HOH A 70 370 100 HOH HOH . I 7 HOH A 71 371 101 HOH HOH . I 7 HOH A 72 372 103 HOH HOH . I 7 HOH A 73 373 104 HOH HOH . I 7 HOH A 74 374 105 HOH HOH . I 7 HOH A 75 375 108 HOH HOH . I 7 HOH A 76 376 110 HOH HOH . I 7 HOH A 77 377 111 HOH HOH . I 7 HOH A 78 378 112 HOH HOH . I 7 HOH A 79 379 113 HOH HOH . I 7 HOH A 80 380 115 HOH HOH . I 7 HOH A 81 381 118 HOH HOH . I 7 HOH A 82 382 119 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 5 _atom_site.Cartn_x 37.306 _atom_site.Cartn_y 25.564 _atom_site.Cartn_z -1.157 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 30.18 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 224 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 26 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #