data_1ORY # _model_server_result.job_id dMEEUlvVtrKIyutk1UaSuw _model_server_result.datetime_utc '2024-10-19 01:38:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ory # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1501}' # _entry.id 1ORY # _exptl.entry_id 1ORY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1ORY _cell.length_a 166.241 _cell.length_b 166.241 _cell.length_c 166.241 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1ORY _symmetry.cell_setting ? _symmetry.Int_Tables_number 214 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 41 3 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA hexameric 6 software_defined_assembly 2 PISA tetrameric 4 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F 1 1 A,B,C,D,E,F 2 1,2,3 A,B,C,D,E,F 3 1,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 z,x,y 0 0 1 1 0 0 0 1 0 0 0 0 3 'crystal symmetry operation' 9_555 y,z,x 0 1 0 0 0 1 1 0 0 0 0 0 4 'crystal symmetry operation' 42_654 -x+7/4,z+1/4,y-1/4 -1 0 0 0 0 1 0 1 0 290.92175 41.56025 -41.56025 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 260 n n P O2 PO4 sing 261 n n P O3 PO4 sing 262 n n P O4 PO4 sing 263 n n # _atom_sites.entry_id 1ORY _atom_sites.fract_transf_matrix[1][1] 0.006015 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006015 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006015 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 PO4 A 1 1501 1501 PO4 PO4 . D 3 PO4 A 1 1502 1502 PO4 PO4 . E 4 HOH A 1 3001 3001 HOH HOH . E 4 HOH A 2 3003 3003 HOH HOH . E 4 HOH A 3 3004 3004 HOH HOH . E 4 HOH A 4 3006 3006 HOH HOH . E 4 HOH A 5 3008 3008 HOH HOH . E 4 HOH A 6 3010 3010 HOH HOH . E 4 HOH A 7 3011 3011 HOH HOH . E 4 HOH A 8 3012 3012 HOH HOH . E 4 HOH A 9 3013 3013 HOH HOH . E 4 HOH A 10 3014 3014 HOH HOH . E 4 HOH A 11 3015 3015 HOH HOH . E 4 HOH A 12 3016 3016 HOH HOH . E 4 HOH A 13 3017 3017 HOH HOH . E 4 HOH A 14 3018 3018 HOH HOH . E 4 HOH A 15 3019 3019 HOH HOH . E 4 HOH A 16 3020 3020 HOH HOH . E 4 HOH A 17 3022 3022 HOH HOH . E 4 HOH A 18 3023 3023 HOH HOH . E 4 HOH A 19 3025 3025 HOH HOH . E 4 HOH A 20 3026 3026 HOH HOH . E 4 HOH A 21 3027 3027 HOH HOH . E 4 HOH A 22 3029 3029 HOH HOH . E 4 HOH A 23 3030 3030 HOH HOH . E 4 HOH A 24 3031 3031 HOH HOH . E 4 HOH A 25 3032 3032 HOH HOH . E 4 HOH A 26 3033 3033 HOH HOH . E 4 HOH A 27 3034 3034 HOH HOH . E 4 HOH A 28 3035 3035 HOH HOH . E 4 HOH A 29 3036 3036 HOH HOH . E 4 HOH A 30 3037 3037 HOH HOH . E 4 HOH A 31 3039 3039 HOH HOH . E 4 HOH A 32 3041 3041 HOH HOH . E 4 HOH A 33 3043 3043 HOH HOH . E 4 HOH A 34 3044 3044 HOH HOH . E 4 HOH A 35 3045 3045 HOH HOH . E 4 HOH A 36 3046 3046 HOH HOH . E 4 HOH A 37 3048 3048 HOH HOH . E 4 HOH A 38 3049 3049 HOH HOH . E 4 HOH A 39 3051 3051 HOH HOH . E 4 HOH A 40 3053 3053 HOH HOH . E 4 HOH A 41 3057 3057 HOH HOH . E 4 HOH A 42 3058 3058 HOH HOH . E 4 HOH A 43 3059 3059 HOH HOH . E 4 HOH A 44 3060 3060 HOH HOH . E 4 HOH A 45 3067 3067 HOH HOH . E 4 HOH A 46 3068 3068 HOH HOH . E 4 HOH A 47 3069 3069 HOH HOH . E 4 HOH A 48 3071 3071 HOH HOH . E 4 HOH A 49 3072 3072 HOH HOH . E 4 HOH A 50 3075 3075 HOH HOH . E 4 HOH A 51 3079 3079 HOH HOH . E 4 HOH A 52 3082 3082 HOH HOH . E 4 HOH A 53 3083 3083 HOH HOH . E 4 HOH A 54 3084 3084 HOH HOH . E 4 HOH A 55 3085 3085 HOH HOH . E 4 HOH A 56 3088 3088 HOH HOH . E 4 HOH A 57 3094 3094 HOH HOH . E 4 HOH A 58 3095 3095 HOH HOH . E 4 HOH A 59 3096 3096 HOH HOH . E 4 HOH A 60 3101 3101 HOH HOH . E 4 HOH A 61 3102 3102 HOH HOH . E 4 HOH A 62 3103 3103 HOH HOH . E 4 HOH A 63 3104 3104 HOH HOH . E 4 HOH A 64 3108 3108 HOH HOH . E 4 HOH A 65 3111 3111 HOH HOH . E 4 HOH A 66 3112 3112 HOH HOH . E 4 HOH A 67 3113 3113 HOH HOH . E 4 HOH A 68 3114 3114 HOH HOH . E 4 HOH A 69 3118 3118 HOH HOH . E 4 HOH A 70 3119 3119 HOH HOH . E 4 HOH A 71 3120 3120 HOH HOH . E 4 HOH A 72 3122 3122 HOH HOH . E 4 HOH A 73 3123 3123 HOH HOH . E 4 HOH A 74 3126 3126 HOH HOH . E 4 HOH A 75 3128 3128 HOH HOH . E 4 HOH A 76 3129 3129 HOH HOH . E 4 HOH A 77 3130 3130 HOH HOH . E 4 HOH A 78 3131 3131 HOH HOH . E 4 HOH A 79 3132 3132 HOH HOH . E 4 HOH A 80 3133 3133 HOH HOH . E 4 HOH A 81 3135 3135 HOH HOH . E 4 HOH A 82 3137 3137 HOH HOH . E 4 HOH A 83 3138 3138 HOH HOH . E 4 HOH A 84 3142 3142 HOH HOH . F 4 HOH B 1 3002 3002 HOH HOH . F 4 HOH B 2 3005 3005 HOH HOH . F 4 HOH B 3 3007 3007 HOH HOH . F 4 HOH B 4 3009 3009 HOH HOH . F 4 HOH B 5 3038 3038 HOH HOH . F 4 HOH B 6 3050 3050 HOH HOH . F 4 HOH B 7 3052 3052 HOH HOH . F 4 HOH B 8 3063 3063 HOH HOH . F 4 HOH B 9 3064 3064 HOH HOH . F 4 HOH B 10 3065 3065 HOH HOH . F 4 HOH B 11 3074 3074 HOH HOH . F 4 HOH B 12 3076 3076 HOH HOH . F 4 HOH B 13 3077 3077 HOH HOH . F 4 HOH B 14 3081 3081 HOH HOH . F 4 HOH B 15 3087 3087 HOH HOH . F 4 HOH B 16 3092 3092 HOH HOH . F 4 HOH B 17 3115 3115 HOH HOH . F 4 HOH B 18 3124 3124 HOH HOH . F 4 HOH B 19 3134 3134 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . C 3 134.04 134.71 134.096 0.3 48.05 ? P PO4 1501 A 1 HETATM 2 O O1 PO4 . . . C 3 135.083 135.758 133.769 0.3 44.89 ? O1 PO4 1501 A 1 HETATM 3 O O2 PO4 . . . C 3 134.652 133.337 134.207 0.3 49.51 ? O2 PO4 1501 A 1 HETATM 4 O O3 PO4 . . . C 3 133.405 135.092 135.415 0.3 49.13 ? O3 PO4 1501 A 1 HETATM 5 O O4 PO4 . . . C 3 133.015 134.635 132.99 0.3 47.19 ? O4 PO4 1501 A 1 # _model_server_stats.io_time_ms 55 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 330 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 5 #