data_1OSN # _model_server_result.job_id brfLj-M2iQxrT7NnnZf5RA _model_server_result.datetime_utc '2024-11-24 06:49:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1osn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":3400}' # _entry.id 1OSN # _exptl.entry_id 1OSN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.8 _cell.angle_gamma 90 _cell.entry_id 1OSN _cell.length_a 99.7 _cell.length_b 54.2 _cell.length_c 167.8 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1OSN _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA tetrameric 4 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H,M 1 1 C,D,I,J,K,L 2 1 A,B,C,D,E,F,G,H,I,J,K,L,M 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 G N N ? 2 I N N ? 2 K N N # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 1OSN _atom_sites.fract_transf_matrix[1][1] 0.01003 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000842 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01845 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00598 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 ADP A 1 400 400 ADP ADP . F 3 BVP A 1 500 500 BVP BDP . G 2 ADP B 1 1400 400 ADP ADP . H 3 BVP B 1 1500 500 BVP BDP . I 2 ADP C 1 2400 400 ADP ADP . J 3 BVP C 1 2500 500 BVP BDP . K 2 ADP D 1 3400 400 ADP ADP . L 3 BVP D 1 3500 500 BVP BDP . M 4 HOH A 1 600 600 HOH HOH . M 4 HOH A 2 601 601 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . K 2 93.096 23.841 34.57 1 94.78 ? PB ADP 3400 D 1 HETATM 2 O O1B ADP . . . K 2 93.089 22.41 34.195 1 90.99 ? O1B ADP 3400 D 1 HETATM 3 O O2B ADP . . . K 2 93.285 24.699 33.387 1 95.64 ? O2B ADP 3400 D 1 HETATM 4 O O3B ADP . . . K 2 91.83 24.174 35.237 1 97.6 ? O3B ADP 3400 D 1 HETATM 5 P PA ADP . . . K 2 94.574 25.161 36.566 1 97.77 ? PA ADP 3400 D 1 HETATM 6 O O1A ADP . . . K 2 95.285 26.283 35.905 1 96.59 ? O1A ADP 3400 D 1 HETATM 7 O O2A ADP . . . K 2 93.428 25.63 37.392 1 101.9 ? O2A ADP 3400 D 1 HETATM 8 O O3A ADP . . . K 2 94.145 24.098 35.593 1 94.9 ? O3A ADP 3400 D 1 HETATM 9 O O5' ADP . . . K 2 95.631 24.455 37.58 1 100.92 ? O5' ADP 3400 D 1 HETATM 10 C C5' ADP . . . K 2 95.273 24.014 38.923 1 108.85 ? C5' ADP 3400 D 1 HETATM 11 C C4' ADP . . . K 2 96.218 24.613 39.997 1 115.18 ? C4' ADP 3400 D 1 HETATM 12 O O4' ADP . . . K 2 97.587 24.072 39.845 1 117.41 ? O4' ADP 3400 D 1 HETATM 13 C C3' ADP . . . K 2 96.349 26.12 39.871 1 116.26 ? C3' ADP 3400 D 1 HETATM 14 O O3' ADP . . . K 2 95.463 26.721 40.831 1 115.11 ? O3' ADP 3400 D 1 HETATM 15 C C2' ADP . . . K 2 97.798 26.447 40.153 1 118.51 ? C2' ADP 3400 D 1 HETATM 16 O O2' ADP . . . K 2 97.992 26.992 41.464 1 118.1 ? O2' ADP 3400 D 1 HETATM 17 C C1' ADP . . . K 2 98.6 25.145 39.937 1 119.05 ? C1' ADP 3400 D 1 HETATM 18 N N9 ADP . . . K 2 99.463 25.177 38.697 1 118.05 ? N9 ADP 3400 D 1 HETATM 19 C C8 ADP . . . K 2 99.084 25.36 37.368 1 116.87 ? C8 ADP 3400 D 1 HETATM 20 N N7 ADP . . . K 2 100.084 25.332 36.526 1 116.44 ? N7 ADP 3400 D 1 HETATM 21 C C5 ADP . . . K 2 101.235 25.121 37.256 1 116.75 ? C5 ADP 3400 D 1 HETATM 22 C C6 ADP . . . K 2 102.622 24.996 36.925 1 115.23 ? C6 ADP 3400 D 1 HETATM 23 N N6 ADP . . . K 2 103.062 25.076 35.648 1 115.39 ? N6 ADP 3400 D 1 HETATM 24 N N1 ADP . . . K 2 103.521 24.784 37.963 1 112.82 ? N1 ADP 3400 D 1 HETATM 25 C C2 ADP . . . K 2 103.074 24.703 39.237 1 111.52 ? C2 ADP 3400 D 1 HETATM 26 N N3 ADP . . . K 2 101.798 24.804 39.68 1 113.46 ? N3 ADP 3400 D 1 HETATM 27 C C4 ADP . . . K 2 100.874 25.02 38.646 1 116.76 ? C4 ADP 3400 D 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 27 #