data_1OTD # _model_server_result.job_id oaTehE509tRv68jwHYf7gg _model_server_result.datetime_utc '2024-11-23 11:05:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1otd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":170}' # _entry.id 1OTD # _exptl.entry_id 1OTD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 164.158 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "4'-HYDROXYCINNAMIC ACID" _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.67 _cell.angle_gamma 90 _cell.entry_id 1OTD _cell.length_a 33.983 _cell.length_b 91.102 _cell.length_c 36.756 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1OTD _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 69 A CYS 69 1_555 C C1 HC4 . A HC4 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.775 ? covale ? covale2 A NZ LYS 110 A LYS 110 1_555 D C1 HC4 . A HC4 170 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale3 B SG CYS 69 B CYS 69 1_555 E C1 HC4 . B HC4 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.775 ? covale ? covale4 B NZ LYS 110 B LYS 110 1_555 F C1 HC4 . B HC4 170 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.378 ? # _chem_comp.formula 'C9 H8 O3' _chem_comp.formula_weight 164.158 _chem_comp.id HC4 _chem_comp.mon_nstd_flag . _chem_comp.name "4'-HYDROXYCINNAMIC ACID" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'PARA-COUMARIC ACID' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 HC4 doub 129 n n C1 O2 HC4 sing 130 n n C1 C2 HC4 sing 131 n n O2 HO2 HC4 sing 132 n n C2 C3 HC4 doub 133 e n C2 H2 HC4 sing 134 n n C3 C1' HC4 sing 135 n n C3 H3 HC4 sing 136 n n C1' C2' HC4 doub 137 n y C1' C6' HC4 sing 138 n y C2' C3' HC4 sing 139 n y C2' H2' HC4 sing 140 n n C3' C4' HC4 doub 141 n y C3' H3' HC4 sing 142 n n C4' C5' HC4 sing 143 n y C4' O4' HC4 sing 144 n n C5' C6' HC4 doub 145 n y C5' H5' HC4 sing 146 n n C6' H6' HC4 sing 147 n n O4' HO4' HC4 sing 148 n n # _atom_sites.entry_id 1OTD _atom_sites.fract_transf_matrix[1][1] 0.029426 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001372 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010977 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.027236 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HC4 A 1 169 169 HC4 HC4 . D 2 HC4 A 1 170 170 HC4 HC4 . E 2 HC4 B 1 169 169 HC4 HC4 . F 2 HC4 B 1 170 170 HC4 HC4 . G 3 HOH A 1 1002 1002 HOH HOH . G 3 HOH A 2 1004 1004 HOH HOH . G 3 HOH A 3 1005 1005 HOH HOH . G 3 HOH A 4 1006 1006 HOH HOH . G 3 HOH A 5 1009 1009 HOH HOH . G 3 HOH A 6 1013 1013 HOH HOH . G 3 HOH A 7 1014 1014 HOH HOH . G 3 HOH A 8 1016 1016 HOH HOH . G 3 HOH A 9 1017 1017 HOH HOH . G 3 HOH A 10 1019 1019 HOH HOH . G 3 HOH A 11 1026 1026 HOH HOH . G 3 HOH A 12 1027 1027 HOH HOH . G 3 HOH A 13 1029 1029 HOH HOH . G 3 HOH A 14 1033 1033 HOH HOH . G 3 HOH A 15 1034 1034 HOH HOH . G 3 HOH A 16 1041 1041 HOH HOH . G 3 HOH A 17 1043 1043 HOH HOH . G 3 HOH A 18 1044 1044 HOH HOH . G 3 HOH A 19 1045 1045 HOH HOH . G 3 HOH A 20 1048 1048 HOH HOH . G 3 HOH A 21 1049 1049 HOH HOH . G 3 HOH A 22 1053 1053 HOH HOH . G 3 HOH A 23 1055 1055 HOH HOH . G 3 HOH A 24 1057 1057 HOH HOH . G 3 HOH A 25 1060 1060 HOH HOH . G 3 HOH A 26 1061 1061 HOH HOH . G 3 HOH A 27 1063 1063 HOH HOH . G 3 HOH A 28 1064 1064 HOH HOH . G 3 HOH A 29 1067 1067 HOH HOH . G 3 HOH A 30 1069 1069 HOH HOH . G 3 HOH A 31 1070 1070 HOH HOH . G 3 HOH A 32 1072 1072 HOH HOH . G 3 HOH A 33 1075 1075 HOH HOH . G 3 HOH A 34 1077 1077 HOH HOH . G 3 HOH A 35 1080 1080 HOH HOH . G 3 HOH A 36 1082 1082 HOH HOH . G 3 HOH A 37 1084 1084 HOH HOH . G 3 HOH A 38 1085 1085 HOH HOH . G 3 HOH A 39 1086 1086 HOH HOH . G 3 HOH A 40 1088 1088 HOH HOH . G 3 HOH A 41 1091 1091 HOH HOH . G 3 HOH A 42 1092 1092 HOH HOH . G 3 HOH A 43 1093 1093 HOH HOH . G 3 HOH A 44 1094 1094 HOH HOH . G 3 HOH A 45 1097 1097 HOH HOH . G 3 HOH A 46 1099 1099 HOH HOH . G 3 HOH A 47 1104 1104 HOH HOH . G 3 HOH A 48 1105 1105 HOH HOH . G 3 HOH A 49 1108 1108 HOH HOH . G 3 HOH A 50 1113 1113 HOH HOH . G 3 HOH A 51 1117 1117 HOH HOH . G 3 HOH A 52 1121 1121 HOH HOH . G 3 HOH A 53 1122 1122 HOH HOH . G 3 HOH A 54 1125 1125 HOH HOH . G 3 HOH A 55 1127 1127 HOH HOH . G 3 HOH A 56 1130 1130 HOH HOH . G 3 HOH A 57 1131 1131 HOH HOH . G 3 HOH A 58 1132 1132 HOH HOH . G 3 HOH A 59 1134 1134 HOH HOH . G 3 HOH A 60 1135 1135 HOH HOH . G 3 HOH A 61 1136 1136 HOH HOH . G 3 HOH A 62 1137 1137 HOH HOH . G 3 HOH A 63 1138 1138 HOH HOH . G 3 HOH A 64 1140 1140 HOH HOH . G 3 HOH A 65 1141 1141 HOH HOH . G 3 HOH A 66 1144 1144 HOH HOH . G 3 HOH A 67 1145 1145 HOH HOH . G 3 HOH A 68 1148 1148 HOH HOH . G 3 HOH A 69 1149 1149 HOH HOH . G 3 HOH A 70 1150 1150 HOH HOH . G 3 HOH A 71 1154 1154 HOH HOH . G 3 HOH A 72 1156 1156 HOH HOH . G 3 HOH A 73 1157 1157 HOH HOH . G 3 HOH A 74 1159 1159 HOH HOH . G 3 HOH A 75 1160 1160 HOH HOH . G 3 HOH A 76 1162 1162 HOH HOH . G 3 HOH A 77 1164 1164 HOH HOH . G 3 HOH A 78 1167 1167 HOH HOH . G 3 HOH A 79 1170 1170 HOH HOH . G 3 HOH A 80 1172 1172 HOH HOH . G 3 HOH A 81 1175 1175 HOH HOH . G 3 HOH A 82 1177 1177 HOH HOH . G 3 HOH A 83 1178 1178 HOH HOH . G 3 HOH A 84 1180 1180 HOH HOH . G 3 HOH A 85 1183 1183 HOH HOH . G 3 HOH A 86 1185 1185 HOH HOH . G 3 HOH A 87 1186 1186 HOH HOH . G 3 HOH A 88 1187 1187 HOH HOH . G 3 HOH A 89 1189 1189 HOH HOH . G 3 HOH A 90 1190 1190 HOH HOH . G 3 HOH A 91 1191 1191 HOH HOH . G 3 HOH A 92 1192 1192 HOH HOH . G 3 HOH A 93 1193 1193 HOH HOH . G 3 HOH A 94 1194 1194 HOH HOH . G 3 HOH A 95 1195 1195 HOH HOH . G 3 HOH A 96 1197 1197 HOH HOH . G 3 HOH A 97 1198 1198 HOH HOH . G 3 HOH A 98 1199 1199 HOH HOH . G 3 HOH A 99 1200 1200 HOH HOH . G 3 HOH A 100 1202 1202 HOH HOH . G 3 HOH A 101 1204 1204 HOH HOH . G 3 HOH A 102 1205 1205 HOH HOH . G 3 HOH A 103 1206 1206 HOH HOH . G 3 HOH A 104 1209 1209 HOH HOH . G 3 HOH A 105 1212 1212 HOH HOH . G 3 HOH A 106 1218 1218 HOH HOH . G 3 HOH A 107 1220 1220 HOH HOH . G 3 HOH A 108 1221 1221 HOH HOH . G 3 HOH A 109 1223 1223 HOH HOH . G 3 HOH A 110 1224 1224 HOH HOH . H 3 HOH B 1 1001 1001 HOH HOH . H 3 HOH B 2 1003 1003 HOH HOH . H 3 HOH B 3 1007 1007 HOH HOH . H 3 HOH B 4 1008 1008 HOH HOH . H 3 HOH B 5 1010 1010 HOH HOH . H 3 HOH B 6 1011 1011 HOH HOH . H 3 HOH B 7 1012 1012 HOH HOH . H 3 HOH B 8 1015 1015 HOH HOH . H 3 HOH B 9 1018 1018 HOH HOH . H 3 HOH B 10 1020 1020 HOH HOH . H 3 HOH B 11 1021 1021 HOH HOH . H 3 HOH B 12 1022 1022 HOH HOH . H 3 HOH B 13 1023 1023 HOH HOH . H 3 HOH B 14 1024 1024 HOH HOH . H 3 HOH B 15 1025 1025 HOH HOH . H 3 HOH B 16 1028 1028 HOH HOH . H 3 HOH B 17 1030 1030 HOH HOH . H 3 HOH B 18 1031 1031 HOH HOH . H 3 HOH B 19 1032 1032 HOH HOH . H 3 HOH B 20 1035 1035 HOH HOH . H 3 HOH B 21 1036 1036 HOH HOH . H 3 HOH B 22 1037 1037 HOH HOH . H 3 HOH B 23 1038 1038 HOH HOH . H 3 HOH B 24 1039 1039 HOH HOH . H 3 HOH B 25 1040 1040 HOH HOH . H 3 HOH B 26 1042 1042 HOH HOH . H 3 HOH B 27 1046 1046 HOH HOH . H 3 HOH B 28 1047 1047 HOH HOH . H 3 HOH B 29 1050 1050 HOH HOH . H 3 HOH B 30 1051 1051 HOH HOH . H 3 HOH B 31 1052 1052 HOH HOH . H 3 HOH B 32 1054 1054 HOH HOH . H 3 HOH B 33 1056 1056 HOH HOH . H 3 HOH B 34 1058 1058 HOH HOH . H 3 HOH B 35 1059 1059 HOH HOH . H 3 HOH B 36 1062 1062 HOH HOH . H 3 HOH B 37 1065 1065 HOH HOH . H 3 HOH B 38 1066 1066 HOH HOH . H 3 HOH B 39 1068 1068 HOH HOH . H 3 HOH B 40 1071 1071 HOH HOH . H 3 HOH B 41 1073 1073 HOH HOH . H 3 HOH B 42 1074 1074 HOH HOH . H 3 HOH B 43 1076 1076 HOH HOH . H 3 HOH B 44 1078 1078 HOH HOH . H 3 HOH B 45 1079 1079 HOH HOH . H 3 HOH B 46 1081 1081 HOH HOH . H 3 HOH B 47 1083 1083 HOH HOH . H 3 HOH B 48 1087 1087 HOH HOH . H 3 HOH B 49 1089 1089 HOH HOH . H 3 HOH B 50 1090 1090 HOH HOH . H 3 HOH B 51 1095 1095 HOH HOH . H 3 HOH B 52 1096 1096 HOH HOH . H 3 HOH B 53 1098 1098 HOH HOH . H 3 HOH B 54 1100 1100 HOH HOH . H 3 HOH B 55 1101 1101 HOH HOH . H 3 HOH B 56 1102 1102 HOH HOH . H 3 HOH B 57 1103 1103 HOH HOH . H 3 HOH B 58 1106 1106 HOH HOH . H 3 HOH B 59 1107 1107 HOH HOH . H 3 HOH B 60 1109 1109 HOH HOH . H 3 HOH B 61 1110 1110 HOH HOH . H 3 HOH B 62 1111 1111 HOH HOH . H 3 HOH B 63 1112 1112 HOH HOH . H 3 HOH B 64 1114 1114 HOH HOH . H 3 HOH B 65 1115 1115 HOH HOH . H 3 HOH B 66 1116 1116 HOH HOH . H 3 HOH B 67 1118 1118 HOH HOH . H 3 HOH B 68 1119 1119 HOH HOH . H 3 HOH B 69 1120 1120 HOH HOH . H 3 HOH B 70 1123 1123 HOH HOH . H 3 HOH B 71 1124 1124 HOH HOH . H 3 HOH B 72 1126 1126 HOH HOH . H 3 HOH B 73 1128 1128 HOH HOH . H 3 HOH B 74 1129 1129 HOH HOH . H 3 HOH B 75 1133 1133 HOH HOH . H 3 HOH B 76 1139 1139 HOH HOH . H 3 HOH B 77 1142 1142 HOH HOH . H 3 HOH B 78 1143 1143 HOH HOH . H 3 HOH B 79 1146 1146 HOH HOH . H 3 HOH B 80 1147 1147 HOH HOH . H 3 HOH B 81 1151 1151 HOH HOH . H 3 HOH B 82 1152 1152 HOH HOH . H 3 HOH B 83 1153 1153 HOH HOH . H 3 HOH B 84 1155 1155 HOH HOH . H 3 HOH B 85 1158 1158 HOH HOH . H 3 HOH B 86 1161 1161 HOH HOH . H 3 HOH B 87 1163 1163 HOH HOH . H 3 HOH B 88 1165 1165 HOH HOH . H 3 HOH B 89 1166 1166 HOH HOH . H 3 HOH B 90 1168 1168 HOH HOH . H 3 HOH B 91 1169 1169 HOH HOH . H 3 HOH B 92 1171 1171 HOH HOH . H 3 HOH B 93 1173 1173 HOH HOH . H 3 HOH B 94 1174 1174 HOH HOH . H 3 HOH B 95 1176 1176 HOH HOH . H 3 HOH B 96 1179 1179 HOH HOH . H 3 HOH B 97 1181 1181 HOH HOH . H 3 HOH B 98 1182 1182 HOH HOH . H 3 HOH B 99 1184 1184 HOH HOH . H 3 HOH B 100 1188 1188 HOH HOH . H 3 HOH B 101 1196 1196 HOH HOH . H 3 HOH B 102 1201 1201 HOH HOH . H 3 HOH B 103 1203 1203 HOH HOH . H 3 HOH B 104 1207 1207 HOH HOH . H 3 HOH B 105 1208 1208 HOH HOH . H 3 HOH B 106 1210 1210 HOH HOH . H 3 HOH B 107 1211 1211 HOH HOH . H 3 HOH B 108 1213 1213 HOH HOH . H 3 HOH B 109 1214 1214 HOH HOH . H 3 HOH B 110 1215 1215 HOH HOH . H 3 HOH B 111 1216 1216 HOH HOH . H 3 HOH B 112 1217 1217 HOH HOH . H 3 HOH B 113 1219 1219 HOH HOH . H 3 HOH B 114 1222 1222 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 HC4 . . . D 2 5.443 1.54 6.28 1 27.83 ? C1 HC4 170 A 1 HETATM 2 O O1 HC4 . . . D 2 5.271 2.212 5.201 1 28.44 ? O1 HC4 170 A 1 HETATM 3 C C2 HC4 . . . D 2 6.445 0.529 6.449 1 25.61 ? C2 HC4 170 A 1 HETATM 4 C C3 HC4 . . . D 2 7.539 0.313 5.722 1 30.84 ? C3 HC4 170 A 1 HETATM 5 C C1' HC4 . . . D 2 8.572 -0.667 6.009 1 31.49 ? C1' HC4 170 A 1 HETATM 6 C C2' HC4 . . . D 2 9.378 -0.928 4.872 1 39.04 ? C2' HC4 170 A 1 HETATM 7 C C3' HC4 . . . D 2 10.437 -1.768 4.922 1 35.96 ? C3' HC4 170 A 1 HETATM 8 C C4' HC4 . . . D 2 10.81 -2.396 6.132 1 26.72 ? C4' HC4 170 A 1 HETATM 9 C C5' HC4 . . . D 2 10.041 -2.207 7.253 1 26.13 ? C5' HC4 170 A 1 HETATM 10 C C6' HC4 . . . D 2 8.878 -1.412 7.129 1 27.76 ? C6' HC4 170 A 1 HETATM 11 O O4' HC4 . . . D 2 11.895 -3.214 6.103 1 31.27 ? O4' HC4 170 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 11 #