data_1OTW # _model_server_result.job_id QOoiE8XgfVOM6w24WbkT9g _model_server_result.datetime_utc '2024-11-16 03:32:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1otw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":500}' # _entry.id 1OTW # _exptl.entry_id 1OTW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 330.206 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PYRROLOQUINOLINE QUINONE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1OTW _cell.length_a 73.504 _cell.length_b 118.419 _cell.length_c 69.996 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1OTW _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C14 H6 N2 O8' _chem_comp.formula_weight 330.206 _chem_comp.id PQQ _chem_comp.mon_nstd_flag . _chem_comp.name 'PYRROLOQUINOLINE QUINONE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 PQQ sing 263 n y N1 C1A PQQ sing 264 n y N1 HN1 PQQ sing 265 n n C2 C2X PQQ sing 266 n n C2 C3 PQQ doub 267 n y C2X O2A PQQ doub 268 n n C2X O2B PQQ sing 269 n n O2B HOB2 PQQ sing 270 n n C3 C3A PQQ sing 271 n y C3 H3 PQQ sing 272 n n C3A C1A PQQ doub 273 n y C3A C4 PQQ sing 274 n n C1A C9A PQQ sing 275 n y C4 O4 PQQ doub 276 n n C4 C5 PQQ sing 277 n n C5 O5 PQQ doub 278 n n C5 C6A PQQ sing 279 n n C6A N6 PQQ doub 280 n y C6A C9A PQQ sing 281 n y N6 C7 PQQ sing 282 n y C7 C7X PQQ sing 283 n n C7 C8 PQQ doub 284 n y C7X O7A PQQ doub 285 n n C7X O7B PQQ sing 286 n n O7B HOB7 PQQ sing 287 n n C8 C9 PQQ sing 288 n y C8 H8 PQQ sing 289 n n C9 C9X PQQ sing 290 n n C9 C9A PQQ doub 291 n y C9X O9A PQQ doub 292 n n C9X O9B PQQ sing 293 n n O9B HOB9 PQQ sing 294 n n # _atom_sites.entry_id 1OTW _atom_sites.fract_transf_matrix[1][1] 0.013605 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008445 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014287 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PQQ A 1 500 500 PQQ PQQ . D 3 PEO A 1 600 600 PEO PEO . E 2 PQQ B 1 501 500 PQQ PQQ . F 3 PEO B 1 601 600 PEO PEO . G 4 HOH A 1 601 2 HOH HOH . G 4 HOH A 2 602 5 HOH HOH . G 4 HOH A 3 603 6 HOH HOH . G 4 HOH A 4 604 8 HOH HOH . G 4 HOH A 5 605 9 HOH HOH . G 4 HOH A 6 606 10 HOH HOH . G 4 HOH A 7 607 12 HOH HOH . G 4 HOH A 8 608 13 HOH HOH . G 4 HOH A 9 609 15 HOH HOH . G 4 HOH A 10 610 16 HOH HOH . G 4 HOH A 11 611 17 HOH HOH . G 4 HOH A 12 612 18 HOH HOH . G 4 HOH A 13 613 19 HOH HOH . G 4 HOH A 14 614 20 HOH HOH . G 4 HOH A 15 615 21 HOH HOH . G 4 HOH A 16 616 22 HOH HOH . G 4 HOH A 17 617 23 HOH HOH . G 4 HOH A 18 618 26 HOH HOH . G 4 HOH A 19 619 27 HOH HOH . G 4 HOH A 20 620 28 HOH HOH . G 4 HOH A 21 621 31 HOH HOH . G 4 HOH A 22 622 33 HOH HOH . G 4 HOH A 23 623 34 HOH HOH . G 4 HOH A 24 624 39 HOH HOH . G 4 HOH A 25 625 40 HOH HOH . G 4 HOH A 26 626 41 HOH HOH . G 4 HOH A 27 627 42 HOH HOH . G 4 HOH A 28 628 44 HOH HOH . G 4 HOH A 29 629 46 HOH HOH . G 4 HOH A 30 630 50 HOH HOH . G 4 HOH A 31 631 51 HOH HOH . G 4 HOH A 32 632 53 HOH HOH . G 4 HOH A 33 633 59 HOH HOH . G 4 HOH A 34 634 63 HOH HOH . G 4 HOH A 35 635 64 HOH HOH . G 4 HOH A 36 636 66 HOH HOH . G 4 HOH A 37 637 67 HOH HOH . G 4 HOH A 38 638 68 HOH HOH . G 4 HOH A 39 639 1 HOH HOH . G 4 HOH A 40 640 3 HOH HOH . G 4 HOH A 41 641 4 HOH HOH . G 4 HOH A 42 642 5 HOH HOH . G 4 HOH A 43 643 6 HOH HOH . G 4 HOH A 44 644 7 HOH HOH . G 4 HOH A 45 645 8 HOH HOH . G 4 HOH A 46 646 9 HOH HOH . G 4 HOH A 47 647 10 HOH HOH . G 4 HOH A 48 648 11 HOH HOH . G 4 HOH A 49 649 12 HOH HOH . G 4 HOH A 50 650 13 HOH HOH . G 4 HOH A 51 651 14 HOH HOH . G 4 HOH A 52 652 16 HOH HOH . G 4 HOH A 53 653 17 HOH HOH . G 4 HOH A 54 654 18 HOH HOH . G 4 HOH A 55 655 20 HOH HOH . G 4 HOH A 56 656 22 HOH HOH . G 4 HOH A 57 657 23 HOH HOH . G 4 HOH A 58 658 24 HOH HOH . G 4 HOH A 59 659 26 HOH HOH . G 4 HOH A 60 660 27 HOH HOH . G 4 HOH A 61 661 28 HOH HOH . G 4 HOH A 62 662 29 HOH HOH . G 4 HOH A 63 663 31 HOH HOH . G 4 HOH A 64 664 32 HOH HOH . G 4 HOH A 65 665 33 HOH HOH . G 4 HOH A 66 666 40 HOH HOH . G 4 HOH A 67 667 42 HOH HOH . G 4 HOH A 68 668 43 HOH HOH . G 4 HOH A 69 669 44 HOH HOH . G 4 HOH A 70 670 45 HOH HOH . G 4 HOH A 71 671 47 HOH HOH . G 4 HOH A 72 672 51 HOH HOH . G 4 HOH A 73 673 52 HOH HOH . G 4 HOH A 74 674 55 HOH HOH . G 4 HOH A 75 675 56 HOH HOH . G 4 HOH A 76 676 58 HOH HOH . G 4 HOH A 77 677 59 HOH HOH . G 4 HOH A 78 678 60 HOH HOH . G 4 HOH A 79 679 61 HOH HOH . G 4 HOH A 80 680 63 HOH HOH . G 4 HOH A 81 681 65 HOH HOH . G 4 HOH A 82 682 66 HOH HOH . G 4 HOH A 83 683 70 HOH HOH . G 4 HOH A 84 684 71 HOH HOH . G 4 HOH A 85 685 72 HOH HOH . G 4 HOH A 86 686 74 HOH HOH . G 4 HOH A 87 687 77 HOH HOH . G 4 HOH A 88 688 81 HOH HOH . G 4 HOH A 89 689 82 HOH HOH . G 4 HOH A 90 690 83 HOH HOH . G 4 HOH A 91 691 84 HOH HOH . G 4 HOH A 92 692 90 HOH HOH . G 4 HOH A 93 693 98 HOH HOH . G 4 HOH A 94 694 103 HOH HOH . H 4 HOH B 1 602 4 HOH HOH . H 4 HOH B 2 603 7 HOH HOH . H 4 HOH B 3 604 11 HOH HOH . H 4 HOH B 4 605 24 HOH HOH . H 4 HOH B 5 606 25 HOH HOH . H 4 HOH B 6 607 29 HOH HOH . H 4 HOH B 7 608 30 HOH HOH . H 4 HOH B 8 609 32 HOH HOH . H 4 HOH B 9 610 36 HOH HOH . H 4 HOH B 10 611 37 HOH HOH . H 4 HOH B 11 612 38 HOH HOH . H 4 HOH B 12 613 48 HOH HOH . H 4 HOH B 13 614 49 HOH HOH . H 4 HOH B 14 615 56 HOH HOH . H 4 HOH B 15 616 58 HOH HOH . H 4 HOH B 16 617 2 HOH HOH . H 4 HOH B 17 618 15 HOH HOH . H 4 HOH B 18 619 19 HOH HOH . H 4 HOH B 19 620 21 HOH HOH . H 4 HOH B 20 621 34 HOH HOH . H 4 HOH B 21 622 35 HOH HOH . H 4 HOH B 22 623 36 HOH HOH . H 4 HOH B 23 624 38 HOH HOH . H 4 HOH B 24 625 41 HOH HOH . H 4 HOH B 25 626 46 HOH HOH . H 4 HOH B 26 627 49 HOH HOH . H 4 HOH B 27 628 53 HOH HOH . H 4 HOH B 28 629 54 HOH HOH . H 4 HOH B 29 630 57 HOH HOH . H 4 HOH B 30 631 75 HOH HOH . H 4 HOH B 31 632 88 HOH HOH . H 4 HOH B 32 633 93 HOH HOH . H 4 HOH B 33 634 99 HOH HOH . H 4 HOH B 34 635 113 HOH HOH . H 4 HOH B 35 636 119 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 PQQ . . . C 2 3.651 43.273 1.707 1 30.69 ? N1 PQQ 500 A 1 HETATM 2 C C2 PQQ . . . C 2 3.56 44.578 1.39 1 29.37 ? C2 PQQ 500 A 1 HETATM 3 C C2X PQQ . . . C 2 4.297 45.561 2.233 1 27.93 ? C2X PQQ 500 A 1 HETATM 4 O O2A PQQ . . . C 2 4.718 45.222 3.296 1 30.19 ? O2A PQQ 500 A 1 HETATM 5 O O2B PQQ . . . C 2 4.381 46.836 1.999 1 30.17 ? O2B PQQ 500 A 1 HETATM 6 C C3 PQQ . . . C 2 2.685 44.797 0.307 1 28.2 ? C3 PQQ 500 A 1 HETATM 7 C C3A PQQ . . . C 2 2.249 43.543 -0.039 1 29.64 ? C3A PQQ 500 A 1 HETATM 8 C C1A PQQ . . . C 2 2.907 42.615 0.824 1 30.31 ? C1A PQQ 500 A 1 HETATM 9 C C4 PQQ . . . C 2 1.306 43.069 -1.107 1 31.67 ? C4 PQQ 500 A 1 HETATM 10 O O4 PQQ . . . C 2 0.782 43.884 -1.879 1 33.23 ? O4 PQQ 500 A 1 HETATM 11 C C5 PQQ . . . C 2 1.002 41.601 -1.222 1 32.86 ? C5 PQQ 500 A 1 HETATM 12 O O5 PQQ . . . C 2 0.116 41.076 -1.976 1 32.72 ? O5 PQQ 500 A 1 HETATM 13 C C6A PQQ . . . C 2 1.698 40.691 -0.291 1 32.28 ? C6A PQQ 500 A 1 HETATM 14 N N6 PQQ . . . C 2 1.412 39.406 -0.388 1 32.5 ? N6 PQQ 500 A 1 HETATM 15 C C7 PQQ . . . C 2 1.96 38.487 0.386 1 31.06 ? C7 PQQ 500 A 1 HETATM 16 C C7X PQQ . . . C 2 1.467 37.097 0.24 1 31.45 ? C7X PQQ 500 A 1 HETATM 17 O O7A PQQ . . . C 2 0.47 36.873 -0.417 1 30.61 ? O7A PQQ 500 A 1 HETATM 18 O O7B PQQ . . . C 2 2.071 36.125 0.892 1 32.68 ? O7B PQQ 500 A 1 HETATM 19 C C8 PQQ . . . C 2 2.863 38.812 1.357 1 31.69 ? C8 PQQ 500 A 1 HETATM 20 C C9 PQQ . . . C 2 3.259 40.114 1.572 1 30.53 ? C9 PQQ 500 A 1 HETATM 21 C C9X PQQ . . . C 2 4.341 40.35 2.563 1 29.9 ? C9X PQQ 500 A 1 HETATM 22 O O9A PQQ . . . C 2 5.339 39.63 2.576 1 27.86 ? O9A PQQ 500 A 1 HETATM 23 O O9B PQQ . . . C 2 4.254 41.34 3.391 1 31.29 ? O9B PQQ 500 A 1 HETATM 24 C C9A PQQ . . . C 2 2.667 41.155 0.719 1 31.47 ? C9A PQQ 500 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 24 #