data_1OTX # _model_server_result.job_id XgBYB2cPguAYnhaamAWIRA _model_server_result.datetime_utc '2024-11-24 11:10:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1otx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":247}' # _entry.id 1OTX # _exptl.entry_id 1OTX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1OTX _cell.length_a 119.77 _cell.length_b 119.77 _cell.length_c 240.03 _cell.Z_PDB 36 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1OTX _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 12_555 x,x-y,-z+1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 0 0 40.005 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 F N N # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 260 n n P O2 PO4 sing 261 n n P O3 PO4 sing 262 n n P O4 PO4 sing 263 n n # _atom_sites.entry_id 1OTX _atom_sites.fract_transf_matrix[1][1] 0.008349 _atom_sites.fract_transf_matrix[1][2] 0.00482 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009641 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004166 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 PO4 A 1 247 247 PO4 PO4 . E 2 PO4 B 1 248 248 PO4 PO4 . F 2 PO4 C 1 249 249 PO4 PO4 . G 3 HOH A 1 248 8 HOH HOH . G 3 HOH A 2 249 9 HOH HOH . G 3 HOH A 3 250 12 HOH HOH . G 3 HOH A 4 251 16 HOH HOH . G 3 HOH A 5 252 17 HOH HOH . G 3 HOH A 6 253 19 HOH HOH . G 3 HOH A 7 254 21 HOH HOH . G 3 HOH A 8 255 22 HOH HOH . G 3 HOH A 9 256 26 HOH HOH . G 3 HOH A 10 257 27 HOH HOH . G 3 HOH A 11 258 28 HOH HOH . G 3 HOH A 12 259 30 HOH HOH . G 3 HOH A 13 260 37 HOH HOH . G 3 HOH A 14 261 39 HOH HOH . G 3 HOH A 15 262 40 HOH HOH . G 3 HOH A 16 263 42 HOH HOH . G 3 HOH A 17 264 48 HOH HOH . G 3 HOH A 18 265 52 HOH HOH . G 3 HOH A 19 266 59 HOH HOH . G 3 HOH A 20 267 63 HOH HOH . G 3 HOH A 21 268 71 HOH HOH . G 3 HOH A 22 269 74 HOH HOH . G 3 HOH A 23 270 77 HOH HOH . G 3 HOH A 24 271 81 HOH HOH . G 3 HOH A 25 272 82 HOH HOH . G 3 HOH A 26 273 83 HOH HOH . G 3 HOH A 27 274 85 HOH HOH . G 3 HOH A 28 275 86 HOH HOH . G 3 HOH A 29 276 89 HOH HOH . G 3 HOH A 30 277 93 HOH HOH . G 3 HOH A 31 278 97 HOH HOH . G 3 HOH A 32 279 102 HOH HOH . G 3 HOH A 33 280 104 HOH HOH . G 3 HOH A 34 281 106 HOH HOH . G 3 HOH A 35 282 116 HOH HOH . G 3 HOH A 36 283 121 HOH HOH . G 3 HOH A 37 284 122 HOH HOH . G 3 HOH A 38 285 124 HOH HOH . G 3 HOH A 39 286 130 HOH HOH . G 3 HOH A 40 287 131 HOH HOH . G 3 HOH A 41 288 132 HOH HOH . G 3 HOH A 42 289 133 HOH HOH . G 3 HOH A 43 290 135 HOH HOH . G 3 HOH A 44 291 138 HOH HOH . G 3 HOH A 45 292 141 HOH HOH . G 3 HOH A 46 293 144 HOH HOH . G 3 HOH A 47 294 148 HOH HOH . G 3 HOH A 48 295 149 HOH HOH . G 3 HOH A 49 296 158 HOH HOH . G 3 HOH A 50 297 165 HOH HOH . G 3 HOH A 51 298 168 HOH HOH . G 3 HOH A 52 299 170 HOH HOH . G 3 HOH A 53 300 172 HOH HOH . G 3 HOH A 54 301 174 HOH HOH . G 3 HOH A 55 302 176 HOH HOH . G 3 HOH A 56 303 182 HOH HOH . G 3 HOH A 57 304 185 HOH HOH . G 3 HOH A 58 305 186 HOH HOH . G 3 HOH A 59 306 191 HOH HOH . H 3 HOH B 1 249 2 HOH HOH . H 3 HOH B 2 250 5 HOH HOH . H 3 HOH B 3 251 6 HOH HOH . H 3 HOH B 4 252 7 HOH HOH . H 3 HOH B 5 253 10 HOH HOH . H 3 HOH B 6 254 13 HOH HOH . H 3 HOH B 7 255 14 HOH HOH . H 3 HOH B 8 256 15 HOH HOH . H 3 HOH B 9 257 18 HOH HOH . H 3 HOH B 10 258 25 HOH HOH . H 3 HOH B 11 259 29 HOH HOH . H 3 HOH B 12 260 31 HOH HOH . H 3 HOH B 13 261 32 HOH HOH . H 3 HOH B 14 262 33 HOH HOH . H 3 HOH B 15 263 35 HOH HOH . H 3 HOH B 16 264 36 HOH HOH . H 3 HOH B 17 265 43 HOH HOH . H 3 HOH B 18 266 47 HOH HOH . H 3 HOH B 19 267 50 HOH HOH . H 3 HOH B 20 268 51 HOH HOH . H 3 HOH B 21 269 53 HOH HOH . H 3 HOH B 22 270 55 HOH HOH . H 3 HOH B 23 271 57 HOH HOH . H 3 HOH B 24 272 61 HOH HOH . H 3 HOH B 25 273 64 HOH HOH . H 3 HOH B 26 274 65 HOH HOH . H 3 HOH B 27 275 73 HOH HOH . H 3 HOH B 28 276 75 HOH HOH . H 3 HOH B 29 277 78 HOH HOH . H 3 HOH B 30 278 88 HOH HOH . H 3 HOH B 31 279 90 HOH HOH . H 3 HOH B 32 280 91 HOH HOH . H 3 HOH B 33 281 99 HOH HOH . H 3 HOH B 34 282 101 HOH HOH . H 3 HOH B 35 283 107 HOH HOH . H 3 HOH B 36 284 109 HOH HOH . H 3 HOH B 37 285 110 HOH HOH . H 3 HOH B 38 286 112 HOH HOH . H 3 HOH B 39 287 114 HOH HOH . H 3 HOH B 40 288 115 HOH HOH . H 3 HOH B 41 289 119 HOH HOH . H 3 HOH B 42 290 123 HOH HOH . H 3 HOH B 43 291 126 HOH HOH . H 3 HOH B 44 292 129 HOH HOH . H 3 HOH B 45 293 134 HOH HOH . H 3 HOH B 46 294 136 HOH HOH . H 3 HOH B 47 295 137 HOH HOH . H 3 HOH B 48 296 139 HOH HOH . H 3 HOH B 49 297 140 HOH HOH . H 3 HOH B 50 298 142 HOH HOH . H 3 HOH B 51 299 143 HOH HOH . H 3 HOH B 52 300 145 HOH HOH . H 3 HOH B 53 301 151 HOH HOH . H 3 HOH B 54 302 152 HOH HOH . H 3 HOH B 55 303 154 HOH HOH . H 3 HOH B 56 304 156 HOH HOH . H 3 HOH B 57 305 157 HOH HOH . H 3 HOH B 58 306 162 HOH HOH . H 3 HOH B 59 307 163 HOH HOH . H 3 HOH B 60 308 166 HOH HOH . H 3 HOH B 61 309 167 HOH HOH . H 3 HOH B 62 310 173 HOH HOH . H 3 HOH B 63 311 177 HOH HOH . H 3 HOH B 64 312 179 HOH HOH . H 3 HOH B 65 313 180 HOH HOH . H 3 HOH B 66 314 181 HOH HOH . H 3 HOH B 67 315 183 HOH HOH . H 3 HOH B 68 316 187 HOH HOH . H 3 HOH B 69 317 188 HOH HOH . H 3 HOH B 70 318 189 HOH HOH . H 3 HOH B 71 319 190 HOH HOH . I 3 HOH C 1 250 1 HOH HOH . I 3 HOH C 2 251 3 HOH HOH . I 3 HOH C 3 252 4 HOH HOH . I 3 HOH C 4 253 11 HOH HOH . I 3 HOH C 5 254 20 HOH HOH . I 3 HOH C 6 255 23 HOH HOH . I 3 HOH C 7 256 24 HOH HOH . I 3 HOH C 8 257 34 HOH HOH . I 3 HOH C 9 258 38 HOH HOH . I 3 HOH C 10 259 41 HOH HOH . I 3 HOH C 11 260 44 HOH HOH . I 3 HOH C 12 261 45 HOH HOH . I 3 HOH C 13 262 46 HOH HOH . I 3 HOH C 14 263 49 HOH HOH . I 3 HOH C 15 264 54 HOH HOH . I 3 HOH C 16 265 56 HOH HOH . I 3 HOH C 17 266 58 HOH HOH . I 3 HOH C 18 267 60 HOH HOH . I 3 HOH C 19 268 62 HOH HOH . I 3 HOH C 20 269 66 HOH HOH . I 3 HOH C 21 270 67 HOH HOH . I 3 HOH C 22 271 68 HOH HOH . I 3 HOH C 23 272 69 HOH HOH . I 3 HOH C 24 273 70 HOH HOH . I 3 HOH C 25 274 72 HOH HOH . I 3 HOH C 26 275 76 HOH HOH . I 3 HOH C 27 276 79 HOH HOH . I 3 HOH C 28 277 80 HOH HOH . I 3 HOH C 29 278 84 HOH HOH . I 3 HOH C 30 279 87 HOH HOH . I 3 HOH C 31 280 92 HOH HOH . I 3 HOH C 32 281 94 HOH HOH . I 3 HOH C 33 282 95 HOH HOH . I 3 HOH C 34 283 96 HOH HOH . I 3 HOH C 35 284 98 HOH HOH . I 3 HOH C 36 285 100 HOH HOH . I 3 HOH C 37 286 103 HOH HOH . I 3 HOH C 38 287 105 HOH HOH . I 3 HOH C 39 288 108 HOH HOH . I 3 HOH C 40 289 111 HOH HOH . I 3 HOH C 41 290 113 HOH HOH . I 3 HOH C 42 291 117 HOH HOH . I 3 HOH C 43 292 118 HOH HOH . I 3 HOH C 44 293 120 HOH HOH . I 3 HOH C 45 294 125 HOH HOH . I 3 HOH C 46 295 127 HOH HOH . I 3 HOH C 47 296 128 HOH HOH . I 3 HOH C 48 297 146 HOH HOH . I 3 HOH C 49 298 147 HOH HOH . I 3 HOH C 50 299 150 HOH HOH . I 3 HOH C 51 300 153 HOH HOH . I 3 HOH C 52 301 155 HOH HOH . I 3 HOH C 53 302 159 HOH HOH . I 3 HOH C 54 303 160 HOH HOH . I 3 HOH C 55 304 161 HOH HOH . I 3 HOH C 56 305 164 HOH HOH . I 3 HOH C 57 306 169 HOH HOH . I 3 HOH C 58 307 171 HOH HOH . I 3 HOH C 59 308 175 HOH HOH . I 3 HOH C 60 309 178 HOH HOH . I 3 HOH C 61 310 184 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . D 2 93.856 66.206 22.746 1 35.49 ? P PO4 247 A 1 HETATM 2 O O1 PO4 . . . D 2 92.386 66.01 22.737 0.62 36.8 ? O1 PO4 247 A 1 HETATM 3 O O2 PO4 . . . D 2 94.328 66.338 24.142 0.62 36.24 ? O2 PO4 247 A 1 HETATM 4 O O3 PO4 . . . D 2 94.514 65.04 22.111 0.62 35.72 ? O3 PO4 247 A 1 HETATM 5 O O4 PO4 . . . D 2 94.195 67.434 21.992 0.62 36.66 ? O4 PO4 247 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 375 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #