data_1OUM # _model_server_result.job_id grtNRW5oxnqYzaD-Z2tqDA _model_server_result.datetime_utc '2024-11-13 07:10:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1oum # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":246}' # _entry.id 1OUM # _exptl.entry_id 1OUM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 280.28 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 9-(6-DEOXY-ALPHA-L-TALOFURANOSYL)-6-METHYLPURINE _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1OUM _cell.length_a 120.94 _cell.length_b 120.94 _cell.length_c 241.78 _cell.Z_PDB 36 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1OUM _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 12_555 x,x-y,-z+1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 0 0 40.296667 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 F N N ? 2 H N N # _chem_comp.formula 'C12 H16 N4 O4' _chem_comp.formula_weight 280.28 _chem_comp.id TAL _chem_comp.mon_nstd_flag . _chem_comp.name 9-(6-DEOXY-ALPHA-L-TALOFURANOSYL)-6-METHYLPURINE _chem_comp.type 'rna linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O5' C5' TAL sing 294 n n O5' H5' TAL sing 295 n n C5' C6' TAL sing 296 n n C5' C4' TAL sing 297 n n C5' H1 TAL sing 298 n n C6' "H6'1" TAL sing 299 n n C6' "H6'2" TAL sing 300 n n C6' "H6'3" TAL sing 301 n n C4' O4' TAL sing 302 n n C4' C3' TAL sing 303 n n C4' H4' TAL sing 304 n n O4' C1' TAL sing 305 n n C1' N9 TAL sing 306 n n C1' C2' TAL sing 307 n n C1' H1' TAL sing 308 n n N9 C8 TAL sing 309 n y N9 C4 TAL sing 310 n y C8 N7 TAL doub 311 n y C8 H8 TAL sing 312 n n N7 C5 TAL sing 313 n y C5 C4 TAL doub 314 n y C5 C6 TAL sing 315 n y C4 N3 TAL sing 316 n y N3 C2 TAL doub 317 n y C2 N1 TAL sing 318 n y C2 H2 TAL sing 319 n n N1 C6 TAL doub 320 n y C6 C7 TAL sing 321 n n C7 H71 TAL sing 322 n n C7 H72 TAL sing 323 n n C7 H73 TAL sing 324 n n C2' O2' TAL sing 325 n n C2' C3' TAL sing 326 n n C2' H2' TAL sing 327 n n O2' H3 TAL sing 328 n n C3' O3' TAL sing 329 n n C3' H3' TAL sing 330 n n O3' H4 TAL sing 331 n n # _atom_sites.entry_id 1OUM _atom_sites.fract_transf_matrix[1][1] 0.008269 _atom_sites.fract_transf_matrix[1][2] 0.004774 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009548 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004136 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 TAL A 1 245 245 TAL TAL . E 3 PO4 B 1 248 247 PO4 PO4 . F 2 TAL B 1 246 245 TAL TAL . G 3 PO4 C 1 249 247 PO4 PO4 . H 2 TAL C 1 247 245 TAL TAL . I 4 HOH A 1 246 22 HOH TIP . I 4 HOH A 2 247 24 HOH TIP . I 4 HOH A 3 248 26 HOH TIP . I 4 HOH A 4 249 28 HOH TIP . I 4 HOH A 5 250 32 HOH TIP . I 4 HOH A 6 251 33 HOH TIP . I 4 HOH A 7 252 37 HOH TIP . I 4 HOH A 8 253 39 HOH TIP . I 4 HOH A 9 254 44 HOH TIP . I 4 HOH A 10 255 47 HOH TIP . I 4 HOH A 11 256 50 HOH TIP . I 4 HOH A 12 257 52 HOH TIP . I 4 HOH A 13 258 53 HOH TIP . I 4 HOH A 14 259 57 HOH TIP . I 4 HOH A 15 260 63 HOH TIP . I 4 HOH A 16 261 71 HOH TIP . I 4 HOH A 17 262 76 HOH TIP . I 4 HOH A 18 263 80 HOH TIP . I 4 HOH A 19 264 83 HOH TIP . I 4 HOH A 20 265 90 HOH TIP . I 4 HOH A 21 266 96 HOH TIP . I 4 HOH A 22 267 98 HOH TIP . I 4 HOH A 23 268 99 HOH TIP . I 4 HOH A 24 269 101 HOH TIP . I 4 HOH A 25 270 102 HOH TIP . I 4 HOH A 26 271 109 HOH TIP . I 4 HOH A 27 272 117 HOH TIP . I 4 HOH A 28 273 122 HOH TIP . I 4 HOH A 29 274 124 HOH TIP . I 4 HOH A 30 275 128 HOH TIP . I 4 HOH A 31 276 129 HOH TIP . I 4 HOH A 32 277 130 HOH TIP . I 4 HOH A 33 278 132 HOH TIP . I 4 HOH A 34 279 133 HOH TIP . I 4 HOH A 35 280 145 HOH TIP . I 4 HOH A 36 281 147 HOH TIP . I 4 HOH A 37 282 148 HOH TIP . I 4 HOH A 38 283 149 HOH TIP . I 4 HOH A 39 284 150 HOH TIP . I 4 HOH A 40 285 151 HOH TIP . I 4 HOH A 41 286 152 HOH TIP . I 4 HOH A 42 287 153 HOH TIP . I 4 HOH A 43 288 155 HOH TIP . I 4 HOH A 44 289 156 HOH TIP . I 4 HOH A 45 290 158 HOH TIP . I 4 HOH A 46 291 161 HOH TIP . I 4 HOH A 47 292 169 HOH TIP . I 4 HOH A 48 293 175 HOH TIP . I 4 HOH A 49 294 177 HOH TIP . I 4 HOH A 50 295 180 HOH TIP . I 4 HOH A 51 296 181 HOH TIP . I 4 HOH A 52 297 182 HOH TIP . I 4 HOH A 53 298 188 HOH TIP . I 4 HOH A 54 299 189 HOH TIP . I 4 HOH A 55 300 190 HOH TIP . J 4 HOH B 1 249 2 HOH TIP . J 4 HOH B 2 250 3 HOH TIP . J 4 HOH B 3 251 4 HOH TIP . J 4 HOH B 4 252 6 HOH TIP . J 4 HOH B 5 253 7 HOH TIP . J 4 HOH B 6 254 9 HOH TIP . J 4 HOH B 7 255 11 HOH TIP . J 4 HOH B 8 256 16 HOH TIP . J 4 HOH B 9 257 17 HOH TIP . J 4 HOH B 10 258 18 HOH TIP . J 4 HOH B 11 259 19 HOH TIP . J 4 HOH B 12 260 21 HOH TIP . J 4 HOH B 13 261 25 HOH TIP . J 4 HOH B 14 262 29 HOH TIP . J 4 HOH B 15 263 30 HOH TIP . J 4 HOH B 16 264 35 HOH TIP . J 4 HOH B 17 265 36 HOH TIP . J 4 HOH B 18 266 38 HOH TIP . J 4 HOH B 19 267 40 HOH TIP . J 4 HOH B 20 268 43 HOH TIP . J 4 HOH B 21 269 45 HOH TIP . J 4 HOH B 22 270 48 HOH TIP . J 4 HOH B 23 271 49 HOH TIP . J 4 HOH B 24 272 56 HOH TIP . J 4 HOH B 25 273 60 HOH TIP . J 4 HOH B 26 274 61 HOH TIP . J 4 HOH B 27 275 62 HOH TIP . J 4 HOH B 28 276 64 HOH TIP . J 4 HOH B 29 277 66 HOH TIP . J 4 HOH B 30 278 68 HOH TIP . J 4 HOH B 31 279 70 HOH TIP . J 4 HOH B 32 280 74 HOH TIP . J 4 HOH B 33 281 75 HOH TIP . J 4 HOH B 34 282 77 HOH TIP . J 4 HOH B 35 283 79 HOH TIP . J 4 HOH B 36 284 81 HOH TIP . J 4 HOH B 37 285 82 HOH TIP . J 4 HOH B 38 286 84 HOH TIP . J 4 HOH B 39 287 87 HOH TIP . J 4 HOH B 40 288 88 HOH TIP . J 4 HOH B 41 289 92 HOH TIP . J 4 HOH B 42 290 93 HOH TIP . J 4 HOH B 43 291 100 HOH TIP . J 4 HOH B 44 292 105 HOH TIP . J 4 HOH B 45 293 106 HOH TIP . J 4 HOH B 46 294 112 HOH TIP . J 4 HOH B 47 295 113 HOH TIP . J 4 HOH B 48 296 116 HOH TIP . J 4 HOH B 49 297 118 HOH TIP . J 4 HOH B 50 298 120 HOH TIP . J 4 HOH B 51 299 123 HOH TIP . J 4 HOH B 52 300 126 HOH TIP . J 4 HOH B 53 301 131 HOH TIP . J 4 HOH B 54 302 134 HOH TIP . J 4 HOH B 55 303 137 HOH TIP . J 4 HOH B 56 304 138 HOH TIP . J 4 HOH B 57 305 140 HOH TIP . J 4 HOH B 58 306 141 HOH TIP . J 4 HOH B 59 307 142 HOH TIP . J 4 HOH B 60 308 144 HOH TIP . J 4 HOH B 61 309 154 HOH TIP . J 4 HOH B 62 310 160 HOH TIP . J 4 HOH B 63 311 162 HOH TIP . J 4 HOH B 64 312 164 HOH TIP . J 4 HOH B 65 313 165 HOH TIP . J 4 HOH B 66 314 167 HOH TIP . J 4 HOH B 67 315 170 HOH TIP . J 4 HOH B 68 316 171 HOH TIP . J 4 HOH B 69 317 172 HOH TIP . J 4 HOH B 70 318 173 HOH TIP . J 4 HOH B 71 319 176 HOH TIP . J 4 HOH B 72 320 178 HOH TIP . J 4 HOH B 73 321 179 HOH TIP . J 4 HOH B 74 322 183 HOH TIP . J 4 HOH B 75 323 184 HOH TIP . J 4 HOH B 76 324 186 HOH TIP . J 4 HOH B 77 325 187 HOH TIP . K 4 HOH C 1 250 1 HOH TIP . K 4 HOH C 2 251 5 HOH TIP . K 4 HOH C 3 252 8 HOH TIP . K 4 HOH C 4 253 10 HOH TIP . K 4 HOH C 5 254 12 HOH TIP . K 4 HOH C 6 255 13 HOH TIP . K 4 HOH C 7 256 14 HOH TIP . K 4 HOH C 8 257 15 HOH TIP . K 4 HOH C 9 258 20 HOH TIP . K 4 HOH C 10 259 23 HOH TIP . K 4 HOH C 11 260 27 HOH TIP . K 4 HOH C 12 261 31 HOH TIP . K 4 HOH C 13 262 34 HOH TIP . K 4 HOH C 14 263 41 HOH TIP . K 4 HOH C 15 264 42 HOH TIP . K 4 HOH C 16 265 46 HOH TIP . K 4 HOH C 17 266 51 HOH TIP . K 4 HOH C 18 267 54 HOH TIP . K 4 HOH C 19 268 55 HOH TIP . K 4 HOH C 20 269 58 HOH TIP . K 4 HOH C 21 270 59 HOH TIP . K 4 HOH C 22 271 65 HOH TIP . K 4 HOH C 23 272 67 HOH TIP . K 4 HOH C 24 273 69 HOH TIP . K 4 HOH C 25 274 72 HOH TIP . K 4 HOH C 26 275 73 HOH TIP . K 4 HOH C 27 276 78 HOH TIP . K 4 HOH C 28 277 85 HOH TIP . K 4 HOH C 29 278 86 HOH TIP . K 4 HOH C 30 279 89 HOH TIP . K 4 HOH C 31 280 91 HOH TIP . K 4 HOH C 32 281 94 HOH TIP . K 4 HOH C 33 282 95 HOH TIP . K 4 HOH C 34 283 97 HOH TIP . K 4 HOH C 35 284 103 HOH TIP . K 4 HOH C 36 285 104 HOH TIP . K 4 HOH C 37 286 107 HOH TIP . K 4 HOH C 38 287 108 HOH TIP . K 4 HOH C 39 288 110 HOH TIP . K 4 HOH C 40 289 111 HOH TIP . K 4 HOH C 41 290 114 HOH TIP . K 4 HOH C 42 291 115 HOH TIP . K 4 HOH C 43 292 119 HOH TIP . K 4 HOH C 44 293 121 HOH TIP . K 4 HOH C 45 294 125 HOH TIP . K 4 HOH C 46 295 127 HOH TIP . K 4 HOH C 47 296 135 HOH TIP . K 4 HOH C 48 297 136 HOH TIP . K 4 HOH C 49 298 139 HOH TIP . K 4 HOH C 50 299 143 HOH TIP . K 4 HOH C 51 300 146 HOH TIP . K 4 HOH C 52 301 157 HOH TIP . K 4 HOH C 53 302 159 HOH TIP . K 4 HOH C 54 303 163 HOH TIP . K 4 HOH C 55 304 166 HOH TIP . K 4 HOH C 56 305 168 HOH TIP . K 4 HOH C 57 306 174 HOH TIP . K 4 HOH C 58 307 185 HOH TIP . K 4 HOH C 59 308 191 HOH TIP . K 4 HOH C 60 309 192 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O5' TAL . . . F 2 71.007 32.026 -5.505 1 46.04 ? O5' TAL 246 B 1 HETATM 2 C C5' TAL . . . F 2 71.828 31.978 -4.314 1 45.52 ? C5' TAL 246 B 1 HETATM 3 C C6' TAL . . . F 2 71.019 31.072 -3.717 1 45.15 ? C6' TAL 246 B 1 HETATM 4 C C4' TAL . . . F 2 73.166 31.251 -4.542 1 44.65 ? C4' TAL 246 B 1 HETATM 5 O O4' TAL . . . F 2 74 31.845 -5.592 1 45.69 ? O4' TAL 246 B 1 HETATM 6 C C1' TAL . . . F 2 74.948 32.75 -5.033 1 44.68 ? C1' TAL 246 B 1 HETATM 7 N N9 TAL . . . F 2 74.546 34.166 -5.364 1 45.18 ? N9 TAL 246 B 1 HETATM 8 C C8 TAL . . . F 2 74.682 34.742 -6.582 1 45.04 ? C8 TAL 246 B 1 HETATM 9 N N7 TAL . . . F 2 74.282 35.983 -6.707 1 45.03 ? N7 TAL 246 B 1 HETATM 10 C C5 TAL . . . F 2 73.824 36.283 -5.433 1 44.98 ? C5 TAL 246 B 1 HETATM 11 C C4 TAL . . . F 2 73.969 35.198 -4.584 1 44.44 ? C4 TAL 246 B 1 HETATM 12 N N3 TAL . . . F 2 73.612 35.175 -3.26 1 43.97 ? N3 TAL 246 B 1 HETATM 13 C C2 TAL . . . F 2 73.089 36.349 -2.847 1 44.7 ? C2 TAL 246 B 1 HETATM 14 N N1 TAL . . . F 2 72.901 37.457 -3.575 1 45.12 ? N1 TAL 246 B 1 HETATM 15 C C6 TAL . . . F 2 73.259 37.45 -4.874 1 44.9 ? C6 TAL 246 B 1 HETATM 16 C C7 TAL . . . F 2 73.073 38.543 -5.589 1 45.21 ? C7 TAL 246 B 1 HETATM 17 C C2' TAL . . . F 2 75.075 32.366 -3.519 1 43.72 ? C2' TAL 246 B 1 HETATM 18 O O2' TAL . . . F 2 76.438 32.118 -3.083 1 43.31 ? O2' TAL 246 B 1 HETATM 19 C C3' TAL . . . F 2 74.09 31.174 -3.314 1 43.92 ? C3' TAL 246 B 1 HETATM 20 O O3' TAL . . . F 2 74.776 29.933 -3.354 1 42.37 ? O3' TAL 246 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 222 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 20 #